Wall clock time and date at job start Tue Mar 31 2020 16:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47449 * 240.00585 * 3 2 1 5 5 H 1.48501 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47174 * 120.00194 * 3 2 1 7 7 C 1.38813 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99848 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00158 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47156 * 180.02562 * 10 9 7 12 12 H 1.09005 * 112.90778 * 43.75348 * 11 10 9 13 13 C 1.53785 * 113.61380 * 174.99899 * 11 10 9 14 14 C 1.53781 * 87.08072 * 139.98374 * 13 11 10 15 15 H 1.08998 * 113.61459 * 219.93946 * 14 13 11 16 16 N 1.46498 * 113.61354 * 89.11681 * 14 13 11 17 17 C 1.34785 * 119.99729 * 155.00177 * 16 14 13 18 18 O 1.21582 * 119.99847 * 359.97438 * 17 16 14 19 19 C 1.47537 * 119.99678 * 180.02562 * 17 16 14 20 20 C 1.39802 * 120.98066 * 0.26799 * 19 17 16 21 21 N 1.32193 * 118.97811 * 180.27747 * 20 19 17 22 22 C 1.31936 * 121.13697 * 359.71817 * 21 20 19 23 23 C 1.50712 * 118.89823 * 180.02562 * 22 21 20 24 24 C 1.52996 * 117.49931 * 8.72284 * 23 22 21 25 25 C 1.52998 * 117.49527 * 300.06336 * 23 22 21 26 26 N 1.31722 * 122.20264 * 0.02562 * 22 21 20 27 27 C 1.32774 * 120.86731 * 0.02562 * 26 22 21 28 28 O 1.35285 * 120.61058 * 179.97438 * 27 26 22 29 29 C 1.53777 * 113.61563 * 272.49829 * 11 10 9 30 30 H 0.96999 * 119.99736 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00110 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.46654 * 60.00040 * 10 9 7 33 33 H 1.08999 * 109.47058 * 299.99998 * 10 9 7 34 34 H 1.09003 * 113.61345 * 25.43492 * 13 11 10 35 35 H 1.08992 * 113.69103 * 254.54290 * 13 11 10 36 36 H 0.96994 * 120.00424 * 334.99679 * 16 14 13 37 37 H 1.08000 * 120.51053 * 359.97438 * 20 19 17 38 38 H 1.08994 * 115.54516 * 154.40122 * 23 22 21 39 39 H 1.08997 * 117.49886 * 0.02562 * 24 23 22 40 40 H 1.08995 * 117.49623 * 145.02292 * 24 23 22 41 41 H 1.09005 * 117.50051 * 214.98372 * 25 23 22 42 42 H 1.09005 * 117.49971 * 359.97438 * 25 23 22 43 43 H 0.96705 * 113.99641 * 90.00101 * 28 27 26 44 44 H 1.09002 * 113.61507 * 105.47361 * 29 11 10 45 45 H 1.08999 * 113.61447 * 334.56975 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.2370 -4.6707 -0.6958 13 6 1.7304 -6.2001 -0.1241 14 6 0.7044 -6.7001 0.9065 15 1 1.1222 -7.3907 1.6390 16 7 -0.5388 -7.1907 0.3065 17 6 -1.2960 -8.0902 0.9655 18 8 -0.9470 -8.4947 2.0576 19 6 -2.5477 -8.5847 0.3609 20 6 -2.9649 -8.1385 -0.8965 21 7 -4.0959 -8.6036 -1.3984 22 6 -4.8268 -9.4799 -0.7361 23 6 -6.1073 -9.9771 -1.3560 24 6 -6.3849 -9.5905 -2.8101 25 6 -7.1850 -8.9401 -1.6788 26 7 -4.4746 -9.9349 0.4489 27 6 -3.3549 -9.5231 1.0315 28 8 -2.9985 -9.9934 2.2489 29 6 0.6162 -5.2483 1.4062 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7145 0.8894 33 1 2.6847 -3.7146 -0.8905 34 1 2.7585 -6.2222 0.2373 35 1 1.6178 -6.6548 -1.1082 36 1 -0.8170 -6.8683 -0.5649 37 1 -2.3747 -7.4210 -1.4473 38 1 -6.4389 -10.9611 -1.0247 39 1 -5.6411 -8.9770 -3.3185 40 1 -6.8994 -10.3201 -3.4354 41 1 -8.2256 -9.2420 -1.5603 42 1 -6.9679 -7.8983 -1.4423 43 1 -2.4518 -10.7905 2.2179 44 1 -0.3968 -4.9337 1.6570 45 1 1.3397 -5.0102 2.1859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734215755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:08 Heat of formation + Delta-G solvation = 38.633549 kcal Electronic energy + Delta-G solvation = -27305.262104 eV Core-core repulsion = 23325.513787 eV Total energy + Delta-G solvation = -3979.748317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.87061 -40.16464 -38.68187 -37.93419 -37.08857 -34.62149 -34.00688 -33.20562 -31.73039 -30.74703 -27.11571 -26.14982 -25.55820 -24.77044 -23.49992 -22.76952 -22.32721 -21.53242 -21.18483 -19.30623 -19.09507 -18.44950 -17.96064 -17.05674 -16.77758 -16.25859 -15.84486 -15.09578 -15.04304 -14.79425 -14.74497 -14.68224 -14.33029 -13.99550 -13.90179 -13.36008 -12.80771 -12.74470 -12.53925 -12.41556 -12.17648 -11.93935 -11.73462 -11.67712 -11.39688 -11.05115 -10.98270 -10.91170 -10.82088 -10.52782 -10.39577 -10.13931 -10.07292 -9.87745 -9.80680 -9.73864 -9.62470 -9.12089 -8.85004 -6.90993 -5.76194 -3.04539 -0.08818 0.46840 2.43856 2.67849 2.85464 3.13160 3.34338 3.44083 3.48345 3.49487 3.54307 3.78934 4.23339 4.38267 4.39119 4.47083 4.54732 4.56942 4.62484 4.76906 4.83797 5.00918 5.05722 5.09236 5.25469 5.37539 5.57670 5.59640 5.64392 5.68367 5.79822 5.80200 5.89027 5.94588 6.06392 6.17800 6.25222 6.34821 6.38948 6.56095 6.76134 6.90294 7.00426 7.22596 7.52094 7.69498 7.92739 8.43056 9.53914 10.12824 10.47073 11.46716 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002244 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.272216 B =12475.977405 C =13826.062706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.114 4.114 12 H 0.087 0.913 13 C -0.137 4.137 14 C 0.116 3.884 15 H 0.102 0.898 16 N -0.703 5.703 17 C 0.572 3.428 18 O -0.517 6.517 19 C -0.268 4.268 20 C 0.205 3.795 21 N -0.524 5.524 22 C 0.395 3.605 23 C -0.112 4.112 24 C -0.149 4.149 25 C -0.152 4.152 26 N -0.539 5.539 27 C 0.425 3.575 28 O -0.452 6.452 29 C -0.139 4.139 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.178 0.822 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.413 0.587 44 H 0.069 0.931 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 -25.137 -4.556 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.133 4.133 12 H 0.106 0.894 13 C -0.176 4.176 14 C 0.012 3.988 15 H 0.120 0.880 16 N -0.354 5.354 17 C 0.357 3.643 18 O -0.393 6.393 19 C -0.277 4.277 20 C 0.038 3.962 21 N -0.239 5.239 22 C 0.130 3.870 23 C -0.132 4.132 24 C -0.187 4.187 25 C -0.190 4.190 26 N -0.263 5.263 27 C 0.236 3.764 28 O -0.260 6.260 29 C -0.177 4.177 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.195 0.805 38 H 0.151 0.849 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.275 0.725 44 H 0.088 0.912 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.180 -25.193 -3.845 27.443 hybrid contribution 1.070 1.154 0.004 1.574 sum -9.110 -24.039 -3.841 25.993 Atomic orbital electron populations 1.69649 1.05113 1.25738 1.57813 1.24743 0.95532 0.97704 1.03101 0.86263 0.78514 0.83549 0.77838 1.21288 1.21697 1.21279 1.19196 0.90994 0.84270 1.42640 0.91285 1.42339 1.05820 0.99989 1.89440 1.20635 0.92989 0.85194 0.97712 1.22774 0.99121 0.94291 0.97070 0.89435 1.23323 0.98920 0.96540 0.98801 1.21995 0.83904 0.96215 0.96723 0.87975 1.45558 1.23840 1.43707 1.22280 1.17516 0.82499 0.79357 0.84977 1.90826 1.71286 1.57846 1.19386 1.21996 1.00240 1.06773 0.98683 1.23497 0.90414 0.92436 0.89885 1.68139 1.06457 1.12462 1.36882 1.22170 0.93524 0.86367 0.84983 1.20752 0.91501 1.01044 0.99916 1.23086 1.02858 1.03240 0.89509 1.23051 0.95952 0.97790 1.02194 1.67821 1.17246 1.29815 1.11458 1.19407 0.86122 0.87588 0.83310 1.84670 1.72233 1.48484 1.20604 1.23426 1.02643 0.93858 0.97798 0.93491 0.78349 0.96180 0.96386 0.88522 0.91188 0.76558 0.80478 0.84912 0.86854 0.87867 0.87568 0.88221 0.72483 0.91247 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.39 5.60 -59.91 -0.34 -18.73 16 10 C 0.16 3.14 6.10 -4.04 -0.02 3.12 16 11 C -0.11 -1.67 3.63 -89.81 -0.33 -1.99 16 12 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.14 -1.52 7.39 -25.92 -0.19 -1.71 16 14 C 0.12 1.36 4.32 -67.12 -0.29 1.07 16 15 H 0.10 1.26 7.46 -51.93 -0.39 0.87 16 16 N -0.70 -7.36 5.22 -54.05 -0.28 -7.64 16 17 C 0.57 6.93 7.78 -12.47 -0.10 6.83 16 18 O -0.52 -7.86 14.92 -15.85 -0.24 -8.09 16 19 C -0.27 -2.87 5.92 -104.56 -0.62 -3.49 16 20 C 0.20 1.84 10.80 -16.81 -0.18 1.66 16 21 N -0.52 -5.18 9.31 -10.44 -0.10 -5.27 16 22 C 0.39 4.04 7.31 -157.13 -1.15 2.89 16 23 C -0.11 -0.85 6.23 -91.77 -0.57 -1.42 16 24 C -0.15 -0.89 10.01 -26.70 -0.27 -1.16 16 25 C -0.15 -0.97 10.24 -26.69 -0.27 -1.24 16 26 N -0.54 -6.16 10.34 -10.46 -0.11 -6.27 16 27 C 0.42 4.88 7.85 -16.19 -0.13 4.76 16 28 O -0.45 -5.00 11.81 -38.69 -0.46 -5.45 16 29 C -0.14 -1.98 7.43 -25.92 -0.19 -2.17 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 31 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 32 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.40 3.25 6.83 -40.82 -0.28 2.97 16 37 H 0.18 1.05 6.53 -52.49 -0.34 0.70 16 38 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 0.78 7.53 -51.93 -0.39 0.39 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.41 2.61 9.06 45.56 0.41 3.02 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -35.57 381.81 -10.08 -45.66 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.47 Total: 10.49 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -4.56 Total: -0.27 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -0.10 Total: -65.54 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.69 Total: -13.55 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.57 -10.08 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734215755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.291 kcal (2) G-P(sol) polarization free energy of solvation -35.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds