Wall clock time and date at job start Tue Mar 31 2020 16:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47449 * 240.00585 * 3 2 1 5 5 H 1.48501 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47174 * 120.00194 * 3 2 1 7 7 C 1.38813 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99848 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00158 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47156 * 180.02562 * 10 9 7 12 12 H 1.09005 * 112.90778 * 43.75348 * 11 10 9 13 13 C 1.53785 * 113.61380 * 174.99899 * 11 10 9 14 14 C 1.53781 * 87.08072 * 139.98374 * 13 11 10 15 15 H 1.08998 * 113.61459 * 219.93946 * 14 13 11 16 16 N 1.46498 * 113.61354 * 89.11681 * 14 13 11 17 17 C 1.34785 * 119.99729 * 155.00177 * 16 14 13 18 18 O 1.21582 * 119.99847 * 359.97438 * 17 16 14 19 19 C 1.47537 * 119.99678 * 180.02562 * 17 16 14 20 20 C 1.39802 * 120.98066 * 0.26799 * 19 17 16 21 21 N 1.32193 * 118.97811 * 180.27747 * 20 19 17 22 22 C 1.31936 * 121.13697 * 359.71817 * 21 20 19 23 23 C 1.50712 * 118.89823 * 180.02562 * 22 21 20 24 24 C 1.52996 * 117.49931 * 8.72284 * 23 22 21 25 25 C 1.52998 * 117.49527 * 300.06336 * 23 22 21 26 26 N 1.31722 * 122.20264 * 0.02562 * 22 21 20 27 27 C 1.32774 * 120.86731 * 0.02562 * 26 22 21 28 28 O 1.35285 * 120.61058 * 179.97438 * 27 26 22 29 29 C 1.53777 * 113.61563 * 272.49829 * 11 10 9 30 30 H 0.96999 * 119.99736 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00110 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.46654 * 60.00040 * 10 9 7 33 33 H 1.08999 * 109.47058 * 299.99998 * 10 9 7 34 34 H 1.09003 * 113.61345 * 25.43492 * 13 11 10 35 35 H 1.08992 * 113.69103 * 254.54290 * 13 11 10 36 36 H 0.96994 * 120.00424 * 334.99679 * 16 14 13 37 37 H 1.08000 * 120.51053 * 359.97438 * 20 19 17 38 38 H 1.08994 * 115.54516 * 154.40122 * 23 22 21 39 39 H 1.08997 * 117.49886 * 0.02562 * 24 23 22 40 40 H 1.08995 * 117.49623 * 145.02292 * 24 23 22 41 41 H 1.09005 * 117.50051 * 214.98372 * 25 23 22 42 42 H 1.09005 * 117.49971 * 359.97438 * 25 23 22 43 43 H 0.96705 * 113.99641 * 90.00101 * 28 27 26 44 44 H 1.09002 * 113.61507 * 105.47361 * 29 11 10 45 45 H 1.08999 * 113.61447 * 334.56975 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.2370 -4.6707 -0.6958 13 6 1.7304 -6.2001 -0.1241 14 6 0.7044 -6.7001 0.9065 15 1 1.1222 -7.3907 1.6390 16 7 -0.5388 -7.1907 0.3065 17 6 -1.2960 -8.0902 0.9655 18 8 -0.9470 -8.4947 2.0576 19 6 -2.5477 -8.5847 0.3609 20 6 -2.9649 -8.1385 -0.8965 21 7 -4.0959 -8.6036 -1.3984 22 6 -4.8268 -9.4799 -0.7361 23 6 -6.1073 -9.9771 -1.3560 24 6 -6.3849 -9.5905 -2.8101 25 6 -7.1850 -8.9401 -1.6788 26 7 -4.4746 -9.9349 0.4489 27 6 -3.3549 -9.5231 1.0315 28 8 -2.9985 -9.9934 2.2489 29 6 0.6162 -5.2483 1.4062 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7145 0.8894 33 1 2.6847 -3.7146 -0.8905 34 1 2.7585 -6.2222 0.2373 35 1 1.6178 -6.6548 -1.1082 36 1 -0.8170 -6.8683 -0.5649 37 1 -2.3747 -7.4210 -1.4473 38 1 -6.4389 -10.9611 -1.0247 39 1 -5.6411 -8.9770 -3.3185 40 1 -6.8994 -10.3201 -3.4354 41 1 -8.2256 -9.2420 -1.5603 42 1 -6.9679 -7.8983 -1.4423 43 1 -2.4518 -10.7905 2.2179 44 1 -0.3968 -4.9337 1.6570 45 1 1.3397 -5.0102 2.1859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734215755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:07 Heat of formation + Delta-G solvation = 12.035520 kcal Electronic energy + Delta-G solvation = -27306.415481 eV Core-core repulsion = 23325.513787 eV Total energy + Delta-G solvation = -3980.901694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65578 -41.15065 -39.61365 -38.84060 -37.69156 -36.33525 -34.97637 -34.27249 -33.00128 -32.22366 -28.59231 -27.08823 -26.61615 -25.57616 -25.17336 -23.32355 -23.24060 -22.79465 -22.03730 -20.41710 -19.88704 -19.31138 -18.99440 -18.84190 -17.50297 -17.12405 -16.80812 -16.57986 -16.01887 -16.01121 -15.67056 -15.45137 -15.36275 -15.17352 -15.12319 -14.90301 -14.41342 -13.73950 -13.45625 -13.37231 -13.22921 -13.11217 -12.90395 -12.67513 -12.55266 -12.32996 -12.23258 -12.07569 -11.91943 -11.72812 -11.69061 -11.42745 -11.35253 -11.14633 -11.02093 -10.84213 -10.58619 -10.50633 -10.07747 -8.96823 -7.94608 -5.22546 -0.87805 -0.29150 1.47040 1.50006 1.56091 1.57580 1.83844 2.06848 2.38884 2.56615 2.63519 2.94879 3.11976 3.38407 3.45175 3.57588 3.60396 3.65486 3.78689 3.86083 3.94845 3.96482 4.05520 4.25597 4.34252 4.35093 4.57746 4.77407 4.80615 4.86533 4.86889 4.88742 4.93862 4.99778 5.00995 5.16076 5.16384 5.27357 5.32686 5.34588 5.49303 5.58628 5.65898 6.28315 6.33964 6.37796 6.75880 7.03082 7.34304 8.13099 8.34724 9.28815 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002244 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.272216 B =12475.977405 C =13826.062706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.159 3.841 11 C -0.112 4.112 12 H 0.088 0.912 13 C -0.114 4.114 14 C 0.128 3.872 15 H 0.101 0.899 16 N -0.692 5.692 17 C 0.575 3.425 18 O -0.553 6.553 19 C -0.278 4.278 20 C 0.214 3.786 21 N -0.531 5.531 22 C 0.388 3.612 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.149 4.149 26 N -0.557 5.557 27 C 0.416 3.584 28 O -0.467 6.467 29 C -0.145 4.145 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.019 0.981 33 H 0.023 0.977 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.412 0.588 37 H 0.209 0.791 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.429 0.571 44 H 0.049 0.951 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -26.031 -6.048 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.131 4.131 12 H 0.106 0.894 13 C -0.152 4.152 14 C 0.023 3.977 15 H 0.119 0.881 16 N -0.344 5.344 17 C 0.361 3.639 18 O -0.431 6.431 19 C -0.287 4.287 20 C 0.047 3.953 21 N -0.246 5.246 22 C 0.124 3.876 23 C -0.148 4.148 24 C -0.173 4.173 25 C -0.187 4.187 26 N -0.282 5.282 27 C 0.227 3.773 28 O -0.278 6.278 29 C -0.184 4.184 30 H 0.059 0.941 31 H 0.204 0.796 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.250 0.750 37 H 0.225 0.775 38 H 0.161 0.839 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.104 0.896 43 H 0.294 0.706 44 H 0.068 0.932 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.677 -26.125 -5.366 28.371 hybrid contribution 0.923 1.382 0.478 1.729 sum -8.754 -24.743 -4.888 26.697 Atomic orbital electron populations 1.69808 1.06599 1.26073 1.59656 1.25571 0.96413 1.01139 1.03891 0.85220 0.77207 0.79194 0.78214 1.20209 1.22236 1.20537 1.19629 0.91515 0.85564 1.41017 0.90706 1.42584 1.05593 1.01303 1.89313 1.20844 0.93832 0.84534 0.97534 1.22717 0.98619 0.94418 0.97361 0.89359 1.23232 0.98896 0.93149 0.99958 1.21812 0.84514 0.94416 0.96956 0.88132 1.45446 1.23270 1.43029 1.22609 1.17675 0.82694 0.79077 0.84486 1.90806 1.72171 1.59216 1.20946 1.21876 0.99914 1.07450 0.99502 1.23979 0.90160 0.91981 0.89208 1.68252 1.06767 1.12707 1.36855 1.22744 0.94229 0.85978 0.84677 1.20944 0.90913 1.01798 1.01191 1.23154 1.02251 1.03114 0.88831 1.23122 0.96697 0.96744 1.02184 1.67877 1.17463 1.30655 1.12184 1.19612 0.86419 0.87860 0.83396 1.84618 1.72727 1.49599 1.20880 1.23445 1.01281 0.96090 0.97581 0.94076 0.79566 0.96261 0.95904 0.87389 0.88548 0.75000 0.77479 0.83937 0.87768 0.85567 0.85592 0.89637 0.70646 0.93228 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.69 13.06 21.65 0.28 -59.40 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.75 -37.50 5.60 -343.46 -1.92 -39.42 16 10 C 0.16 5.99 6.10 86.38 0.53 6.51 16 11 C -0.11 -3.13 3.63 -10.27 -0.04 -3.17 16 12 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 13 C -0.11 -2.18 7.39 31.12 0.23 -1.95 16 14 C 0.13 2.79 4.32 45.52 0.20 2.99 16 15 H 0.10 2.32 7.46 -2.39 -0.02 2.31 16 16 N -0.69 -13.32 5.22 -443.19 -2.31 -15.63 16 17 C 0.57 13.50 7.78 86.69 0.67 14.17 16 18 O -0.55 -16.75 14.92 16.24 0.24 -16.51 16 19 C -0.28 -5.79 5.92 -19.83 -0.12 -5.90 16 20 C 0.21 3.54 10.80 85.02 0.92 4.46 16 21 N -0.53 -9.89 9.31 -186.93 -1.74 -11.63 16 22 C 0.39 7.69 7.31 138.73 1.01 8.70 16 23 C -0.13 -1.79 6.23 -11.54 -0.07 -1.86 16 24 C -0.14 -1.37 10.01 30.62 0.31 -1.07 16 25 C -0.15 -1.70 10.24 30.62 0.31 -1.39 16 26 N -0.56 -12.65 10.34 -299.83 -3.10 -15.75 16 27 C 0.42 9.58 7.85 85.17 0.67 10.25 16 28 O -0.47 -10.55 11.81 -65.48 -0.77 -11.32 16 29 C -0.15 -4.08 7.43 31.12 0.23 -3.85 16 30 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.37 19.98 7.67 -92.71 -0.71 19.27 16 32 H 0.02 0.74 7.84 -2.39 -0.02 0.72 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 1.91 8.10 -2.39 -0.02 1.89 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.41 5.69 6.83 -92.71 -0.63 5.05 16 37 H 0.21 1.92 6.53 -2.91 -0.02 1.90 16 38 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 1.28 7.53 -2.39 -0.02 1.26 16 40 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.43 5.64 9.06 -74.05 -0.67 4.97 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.09 2.51 7.90 -2.39 -0.02 2.50 16 Total: -1.00 -77.08 381.81 -2.09 -79.18 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.96 Total: 31.26 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.16 Total: 10.96 kcal Atomic # 7 Polarization: -133.05 SS G_CDS: -8.79 Total: -141.84 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.53 Total: -27.83 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -77.08 -2.09 -79.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734215755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.211 kcal (2) G-P(sol) polarization free energy of solvation -77.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds