Wall clock time and date at job start Tue Mar 31 2020 16:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29816 * 126.33338 * 2 1 4 4 O 1.41326 * 109.72397 * 179.97438 * 3 2 1 5 5 C 1.34841 * 109.42425 * 359.97438 * 4 3 2 6 6 N 1.32444 * 133.09655 * 180.02562 * 5 4 3 7 7 C 1.31564 * 122.02685 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.17608 * 179.97438 * 7 6 5 9 9 C 1.38599 * 121.65561 * 359.97438 * 7 6 5 10 10 C 1.39441 * 119.20096 * 0.25296 * 9 7 6 11 11 C 1.48000 * 121.10518 * 179.72376 * 10 9 7 12 12 O 1.21527 * 119.99877 * 126.44129 * 11 10 9 13 13 N 1.34773 * 120.00114 * 306.44740 * 11 10 9 14 14 C 1.46497 * 120.00112 * 4.45311 * 13 11 10 15 15 C 1.46499 * 119.99888 * 184.44620 * 13 11 10 16 16 C 1.53000 * 109.47065 * 90.00236 * 15 13 11 17 17 H 1.08999 * 109.47470 * 294.99939 * 16 15 13 18 18 C 1.53003 * 109.47670 * 174.99937 * 16 15 13 19 19 N 1.46510 * 109.47181 * 54.99756 * 16 15 13 20 20 C 1.36934 * 119.99786 * 205.00348 * 19 16 15 21 21 H 1.07995 * 120.00281 * 359.97438 * 20 19 16 22 22 C 1.38818 * 119.99583 * 179.97438 * 20 19 16 23 23 N 1.31617 * 120.00048 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00052 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47008 * 89.99775 * 24 22 20 26 26 H 1.48494 * 109.47017 * 210.00066 * 24 22 20 27 27 H 1.48497 * 109.47031 * 329.99948 * 24 22 20 28 28 C 1.40517 * 106.85693 * 0.02562 * 5 4 3 29 29 H 1.09002 * 109.47022 * 264.84481 * 1 2 3 30 30 H 1.08998 * 109.47478 * 24.84913 * 1 2 3 31 31 H 1.09001 * 109.47380 * 144.84635 * 1 2 3 32 32 H 1.09004 * 109.46965 * 270.02754 * 8 7 6 33 33 H 1.09005 * 109.46643 * 30.01943 * 8 7 6 34 34 H 1.08992 * 109.47502 * 150.02081 * 8 7 6 35 35 H 1.07995 * 120.39750 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47660 * 84.29161 * 14 13 11 37 37 H 1.09005 * 109.47101 * 204.29254 * 14 13 11 38 38 H 1.09000 * 109.46603 * 324.29085 * 14 13 11 39 39 H 1.09006 * 109.47234 * 209.99898 * 15 13 11 40 40 H 1.08996 * 109.47351 * 330.00266 * 15 13 11 41 41 H 1.09007 * 109.46839 * 300.00241 * 18 16 15 42 42 H 1.09001 * 109.46683 * 59.99319 * 18 16 15 43 43 H 1.08995 * 109.47262 * 180.02562 * 18 16 15 44 44 H 0.96996 * 119.99310 * 25.00296 * 19 16 15 45 45 H 0.96998 * 120.00325 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6966 -0.7050 0.0015 6 7 4.7070 -1.5613 0.0028 7 6 4.5181 -2.8633 0.0031 8 6 5.7148 -3.7793 0.0039 9 6 3.2461 -3.4138 0.0025 10 6 2.1383 -2.5669 -0.0037 11 6 0.7613 -3.1092 -0.0106 12 8 -0.0375 -2.7498 0.8318 13 7 0.3933 -4.0018 -0.9509 14 6 1.3815 -4.5090 -1.9060 15 6 -0.9950 -4.4649 -1.0178 16 6 -1.7952 -3.5456 -1.9427 17 1 -1.8449 -2.5471 -1.5084 18 6 -3.2115 -4.0993 -2.1116 19 7 -1.1385 -3.4770 -3.2506 20 6 -1.3281 -2.3855 -4.0555 21 1 -1.9620 -1.5754 -3.7264 22 6 -0.7054 -2.3203 -5.2945 23 7 -0.8880 -1.2715 -6.0684 24 14 0.3916 -3.7212 -5.8634 25 1 -0.4230 -4.7189 -6.6025 26 1 1.4517 -3.1884 -6.7563 27 1 1.0180 -4.3699 -4.6835 28 6 2.3734 -1.1780 0.0010 29 1 -0.3633 -0.0923 1.0235 30 1 -0.3634 0.9325 -0.4318 31 1 -0.3634 -0.8402 -0.5917 32 1 6.0041 -4.0000 -1.0236 33 1 6.5438 -3.2933 0.5184 34 1 5.4621 -4.7068 0.5175 35 1 3.1146 -4.4857 0.0023 36 1 1.9233 -5.3431 -1.4600 37 1 0.8736 -4.8472 -2.8093 38 1 2.0829 -3.7142 -2.1596 39 1 -1.0201 -5.4828 -1.4069 40 1 -1.4327 -4.4464 -0.0198 41 1 -3.1618 -5.0979 -2.5460 42 1 -3.7000 -4.1504 -1.1386 43 1 -3.7814 -3.4446 -2.7709 44 1 -0.5695 -4.2048 -3.5463 45 1 -0.4526 -1.2257 -6.9340 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734336793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:46 Heat of formation + Delta-G solvation = 70.006515 kcal Electronic energy + Delta-G solvation = -29931.822534 eV Core-core repulsion = 25953.434651 eV Total energy + Delta-G solvation = -3978.387883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.19012 -40.13924 -38.92778 -36.74579 -34.83602 -34.64157 -32.75416 -32.31394 -31.89021 -29.65120 -28.75368 -27.86039 -27.16501 -26.45545 -24.23687 -23.40453 -22.87798 -21.10535 -20.37549 -19.23129 -18.26181 -17.81538 -17.59522 -17.23561 -16.54234 -16.08489 -15.61532 -14.98816 -14.83536 -14.33885 -14.20348 -14.01007 -13.84026 -13.57962 -13.41556 -13.33178 -13.04333 -12.91995 -12.71333 -12.61096 -12.48300 -12.42784 -12.30939 -12.03498 -11.76238 -11.58936 -11.41480 -11.05177 -11.02152 -10.81022 -10.70303 -10.42224 -10.17668 -9.73145 -9.66183 -9.52756 -9.08090 -9.06814 -8.58425 -7.37176 -5.85240 -3.21392 0.09791 0.69451 1.84982 1.99998 2.45187 2.87269 3.15650 3.26634 3.31815 3.34857 3.59036 3.93748 4.05727 4.23691 4.38351 4.47056 4.78347 4.90353 4.92419 5.06033 5.13957 5.24990 5.27016 5.36578 5.40935 5.41933 5.48601 5.50934 5.53877 5.60525 5.62864 5.70030 5.81875 5.89550 5.99047 6.02527 6.06046 6.21029 6.33904 6.45920 6.65183 6.90269 6.98624 7.25121 7.42793 7.89576 7.98051 8.32563 9.09999 9.81954 10.00848 11.33064 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.004809 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.876784 B = 5821.020299 C = 5920.205495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.164 3.836 3 N -0.277 5.277 4 O -0.084 6.084 5 C 0.299 3.701 6 N -0.475 5.475 7 C 0.200 3.800 8 C -0.106 4.106 9 C -0.182 4.182 10 C 0.018 3.982 11 C 0.559 3.441 12 O -0.522 6.522 13 N -0.584 5.584 14 C 0.071 3.929 15 C 0.105 3.895 16 C 0.160 3.840 17 H 0.059 0.941 18 C -0.163 4.163 19 N -0.745 5.745 20 C -0.240 4.240 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.931 5.931 24 Si 0.879 3.121 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.275 1.275 28 C -0.212 4.212 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.357 0.643 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -9.615 13.826 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 N -0.025 5.025 4 O -0.087 6.087 5 C 0.116 3.884 6 N -0.196 5.196 7 C 0.057 3.943 8 C -0.163 4.163 9 C -0.203 4.203 10 C 0.005 3.995 11 C 0.345 3.655 12 O -0.398 6.398 13 N -0.314 5.314 14 C -0.072 4.072 15 C -0.018 4.018 16 C 0.050 3.950 17 H 0.077 0.923 18 C -0.223 4.223 19 N -0.389 5.389 20 C -0.370 4.370 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.579 5.579 24 Si 0.710 3.290 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.202 1.202 28 C -0.219 4.219 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.172 0.828 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.191 0.809 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.289 -7.430 14.151 18.005 hybrid contribution 0.016 -1.934 -0.899 2.132 sum 8.305 -9.364 13.252 18.229 Atomic orbital electron populations 1.20611 0.83338 1.05451 1.04966 1.24575 0.98705 0.88630 0.89776 1.80121 0.83803 1.16974 1.21581 1.89251 1.23749 1.14668 1.81003 1.20282 0.89008 0.86617 0.92488 1.66309 1.33000 1.02340 1.17938 1.21313 0.94872 0.88292 0.89842 1.20860 0.94312 0.96960 1.04210 1.22081 0.91402 1.01405 1.05422 1.19898 0.94981 0.91289 0.93297 1.17974 0.86214 0.79356 0.81969 1.90793 1.52168 1.59017 1.37843 1.47533 1.10880 1.42304 1.30729 1.22181 0.92524 0.99171 0.93282 1.22049 0.79995 0.98142 1.01607 1.20638 0.90746 0.97477 0.86167 0.92260 1.22340 0.98589 1.01192 1.00211 1.42806 1.57342 1.22271 1.16508 1.19024 1.24748 0.96629 0.96623 0.89266 1.24668 1.00289 0.97165 0.96934 1.69683 1.47654 1.29072 1.11449 0.86723 0.81096 0.82821 0.78385 1.21153 1.21826 1.20188 1.21196 0.93504 0.94205 1.13011 0.88116 0.89290 0.88386 0.89125 0.89570 0.89628 0.82767 0.92516 0.89489 0.91179 0.90393 0.89134 0.93487 0.93855 0.91922 0.80896 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.01 36.00 0.32 -0.95 16 2 C 0.16 2.74 7.46 -80.24 -0.60 2.15 16 3 N -0.28 -4.88 12.81 34.84 0.45 -4.44 16 4 O -0.08 -1.51 12.06 7.64 0.09 -1.42 16 5 C 0.30 5.01 8.64 -16.43 -0.14 4.87 16 6 N -0.47 -6.99 10.25 -9.24 -0.09 -7.09 16 7 C 0.20 2.26 6.78 -82.57 -0.56 1.70 16 8 C -0.11 -0.72 10.14 36.01 0.37 -0.35 16 9 C -0.18 -2.04 7.68 -39.00 -0.30 -2.34 16 10 C 0.02 0.27 4.76 -104.46 -0.50 -0.23 16 11 C 0.56 8.47 6.18 -12.26 -0.08 8.39 16 12 O -0.52 -8.73 14.77 5.34 0.08 -8.65 16 13 N -0.58 -8.22 2.73 -182.64 -0.50 -8.72 16 14 C 0.07 0.91 8.71 59.85 0.52 1.43 16 15 C 0.10 1.43 5.06 -4.04 -0.02 1.41 16 16 C 0.16 2.74 3.20 -67.92 -0.22 2.53 16 17 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 18 C -0.16 -2.52 9.49 37.16 0.35 -2.17 16 19 N -0.74 -15.57 4.37 -53.42 -0.23 -15.80 16 20 C -0.24 -6.29 10.41 -15.06 -0.16 -6.44 16 21 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -28.36 13.97 55.49 0.78 -27.58 16 24 Si 0.88 20.51 27.74 -169.99 -4.71 15.79 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.28 -5.55 5.05 56.52 0.29 -5.26 16 28 C -0.21 -3.50 6.19 -104.83 -0.65 -4.15 16 29 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.63 6.64 -51.93 -0.35 1.28 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 35 H 0.15 1.21 6.85 -52.49 -0.36 0.85 16 36 H 0.06 0.50 7.30 -51.93 -0.38 0.12 16 37 H 0.09 1.24 4.27 -51.93 -0.22 1.02 16 38 H 0.07 0.97 6.49 -51.93 -0.34 0.63 16 39 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.09 1.18 7.36 -51.93 -0.38 0.79 16 41 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.36 7.16 3.50 -40.82 -0.14 7.02 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -33.03 367.15 -6.42 -39.45 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.06 Total: 7.03 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.75 Total: 5.88 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.40 Total: -63.63 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.17 Total: -10.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.71 Total: 15.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.03 -6.42 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734336793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.459 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds