Wall clock time and date at job start Tue Mar 31 2020 16:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29816 * 126.33338 * 2 1 4 4 O 1.41326 * 109.72397 * 179.97438 * 3 2 1 5 5 C 1.34841 * 109.42425 * 359.97438 * 4 3 2 6 6 N 1.32444 * 133.09655 * 180.02562 * 5 4 3 7 7 C 1.31564 * 122.02685 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.17608 * 179.97438 * 7 6 5 9 9 C 1.38599 * 121.65561 * 359.97438 * 7 6 5 10 10 C 1.39441 * 119.20096 * 0.25296 * 9 7 6 11 11 C 1.48000 * 121.10518 * 179.72376 * 10 9 7 12 12 O 1.21527 * 119.99877 * 126.44129 * 11 10 9 13 13 N 1.34773 * 120.00114 * 306.44740 * 11 10 9 14 14 C 1.46497 * 120.00112 * 4.45311 * 13 11 10 15 15 C 1.46499 * 119.99888 * 184.44620 * 13 11 10 16 16 C 1.53000 * 109.47065 * 90.00236 * 15 13 11 17 17 H 1.08999 * 109.47470 * 294.99939 * 16 15 13 18 18 C 1.53003 * 109.47670 * 174.99937 * 16 15 13 19 19 N 1.46510 * 109.47181 * 54.99756 * 16 15 13 20 20 C 1.36934 * 119.99786 * 205.00348 * 19 16 15 21 21 H 1.07995 * 120.00281 * 359.97438 * 20 19 16 22 22 C 1.38818 * 119.99583 * 179.97438 * 20 19 16 23 23 N 1.31617 * 120.00048 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00052 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47008 * 89.99775 * 24 22 20 26 26 H 1.48494 * 109.47017 * 210.00066 * 24 22 20 27 27 H 1.48497 * 109.47031 * 329.99948 * 24 22 20 28 28 C 1.40517 * 106.85693 * 0.02562 * 5 4 3 29 29 H 1.09002 * 109.47022 * 264.84481 * 1 2 3 30 30 H 1.08998 * 109.47478 * 24.84913 * 1 2 3 31 31 H 1.09001 * 109.47380 * 144.84635 * 1 2 3 32 32 H 1.09004 * 109.46965 * 270.02754 * 8 7 6 33 33 H 1.09005 * 109.46643 * 30.01943 * 8 7 6 34 34 H 1.08992 * 109.47502 * 150.02081 * 8 7 6 35 35 H 1.07995 * 120.39750 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47660 * 84.29161 * 14 13 11 37 37 H 1.09005 * 109.47101 * 204.29254 * 14 13 11 38 38 H 1.09000 * 109.46603 * 324.29085 * 14 13 11 39 39 H 1.09006 * 109.47234 * 209.99898 * 15 13 11 40 40 H 1.08996 * 109.47351 * 330.00266 * 15 13 11 41 41 H 1.09007 * 109.46839 * 300.00241 * 18 16 15 42 42 H 1.09001 * 109.46683 * 59.99319 * 18 16 15 43 43 H 1.08995 * 109.47262 * 180.02562 * 18 16 15 44 44 H 0.96996 * 119.99310 * 25.00296 * 19 16 15 45 45 H 0.96998 * 120.00325 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6966 -0.7050 0.0015 6 7 4.7070 -1.5613 0.0028 7 6 4.5181 -2.8633 0.0031 8 6 5.7148 -3.7793 0.0039 9 6 3.2461 -3.4138 0.0025 10 6 2.1383 -2.5669 -0.0037 11 6 0.7613 -3.1092 -0.0106 12 8 -0.0375 -2.7498 0.8318 13 7 0.3933 -4.0018 -0.9509 14 6 1.3815 -4.5090 -1.9060 15 6 -0.9950 -4.4649 -1.0178 16 6 -1.7952 -3.5456 -1.9427 17 1 -1.8449 -2.5471 -1.5084 18 6 -3.2115 -4.0993 -2.1116 19 7 -1.1385 -3.4770 -3.2506 20 6 -1.3281 -2.3855 -4.0555 21 1 -1.9620 -1.5754 -3.7264 22 6 -0.7054 -2.3203 -5.2945 23 7 -0.8880 -1.2715 -6.0684 24 14 0.3916 -3.7212 -5.8634 25 1 -0.4230 -4.7189 -6.6025 26 1 1.4517 -3.1884 -6.7563 27 1 1.0180 -4.3699 -4.6835 28 6 2.3734 -1.1780 0.0010 29 1 -0.3633 -0.0923 1.0235 30 1 -0.3634 0.9325 -0.4318 31 1 -0.3634 -0.8402 -0.5917 32 1 6.0041 -4.0000 -1.0236 33 1 6.5438 -3.2933 0.5184 34 1 5.4621 -4.7068 0.5175 35 1 3.1146 -4.4857 0.0023 36 1 1.9233 -5.3431 -1.4600 37 1 0.8736 -4.8472 -2.8093 38 1 2.0829 -3.7142 -2.1596 39 1 -1.0201 -5.4828 -1.4069 40 1 -1.4327 -4.4464 -0.0198 41 1 -3.1618 -5.0979 -2.5460 42 1 -3.7000 -4.1504 -1.1386 43 1 -3.7814 -3.4446 -2.7709 44 1 -0.5695 -4.2048 -3.5463 45 1 -0.4526 -1.2257 -6.9340 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734336793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:45 Heat of formation + Delta-G solvation = 45.397885 kcal Electronic energy + Delta-G solvation = -29932.889645 eV Core-core repulsion = 25953.434651 eV Total energy + Delta-G solvation = -3979.454993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.34819 -41.28410 -39.99945 -38.11930 -36.05078 -36.02116 -34.24575 -33.47725 -33.12631 -31.35189 -29.99509 -28.80406 -28.21751 -27.53533 -25.66674 -24.91443 -23.96580 -22.31098 -21.81334 -20.47695 -19.64490 -19.37996 -18.71972 -18.34227 -17.74548 -17.24670 -16.88398 -16.52694 -16.08223 -15.62849 -15.24329 -15.19031 -15.04428 -14.99032 -14.62556 -14.52269 -14.29939 -14.15738 -13.91787 -13.82871 -13.65207 -13.35700 -13.28582 -13.10202 -13.06736 -12.81294 -12.73469 -12.60288 -12.39378 -12.23919 -12.19798 -11.76228 -11.71342 -11.52542 -11.00246 -10.83262 -10.66463 -10.10520 -9.74218 -9.25108 -7.98876 -5.31921 -0.99242 -0.35447 0.62552 0.83035 1.28725 1.32796 1.42039 1.49118 1.82223 2.28029 2.45412 2.50663 2.78767 3.01436 3.24180 3.33603 3.41565 3.57924 3.74148 3.95394 4.02023 4.08836 4.16173 4.25628 4.35403 4.40788 4.42989 4.52811 4.58248 4.65705 4.72176 4.82200 4.83006 4.85588 4.88259 4.90654 4.99690 5.06354 5.27432 5.32370 5.34592 5.61391 5.76230 5.80742 6.15692 6.23567 6.40593 6.86711 7.11860 7.85355 8.07158 9.22918 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.004809 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.876784 B = 5821.020299 C = 5920.205495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.155 3.845 3 N -0.301 5.301 4 O -0.104 6.104 5 C 0.277 3.723 6 N -0.493 5.493 7 C 0.206 3.794 8 C -0.105 4.105 9 C -0.159 4.159 10 C 0.001 3.999 11 C 0.558 3.442 12 O -0.545 6.545 13 N -0.584 5.584 14 C 0.063 3.937 15 C 0.112 3.888 16 C 0.153 3.847 17 H 0.029 0.971 18 C -0.155 4.155 19 N -0.740 5.740 20 C -0.216 4.216 21 H 0.045 0.955 22 C -0.071 4.071 23 N -0.990 5.990 24 Si 0.945 3.055 25 H -0.282 1.282 26 H -0.309 1.309 27 H -0.221 1.221 28 C -0.239 4.239 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.201 0.799 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.367 0.633 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.590 -14.753 15.192 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.025 4.025 3 N -0.050 5.050 4 O -0.107 6.107 5 C 0.095 3.905 6 N -0.215 5.215 7 C 0.063 3.937 8 C -0.162 4.162 9 C -0.179 4.179 10 C -0.012 4.012 11 C 0.345 3.655 12 O -0.423 6.423 13 N -0.314 5.314 14 C -0.080 4.080 15 C -0.010 4.010 16 C 0.044 3.956 17 H 0.047 0.953 18 C -0.215 4.215 19 N -0.386 5.386 20 C -0.347 4.347 21 H 0.063 0.937 22 C -0.262 4.262 23 N -0.641 5.641 24 Si 0.772 3.228 25 H -0.208 1.208 26 H -0.237 1.237 27 H -0.144 1.144 28 C -0.246 4.246 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.218 0.782 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.203 0.797 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.059 -12.626 15.579 22.435 hybrid contribution -0.563 -0.369 -1.245 1.416 sum 9.496 -12.996 14.334 21.553 Atomic orbital electron populations 1.20549 0.82634 1.04740 1.05501 1.24870 0.99244 0.89185 0.89177 1.80049 0.84007 1.17764 1.23196 1.89160 1.23885 1.16077 1.81564 1.20536 0.89888 0.86252 0.93777 1.66461 1.32601 1.03671 1.18751 1.22291 0.96876 0.87504 0.87013 1.21117 0.92160 0.97101 1.05777 1.22628 0.90020 1.03117 1.02110 1.20041 0.95853 0.90757 0.94519 1.18080 0.86282 0.79211 0.81966 1.90773 1.52865 1.59702 1.39008 1.47624 1.11296 1.41975 1.30493 1.22402 0.92149 1.00361 0.93040 1.22012 0.79345 0.98464 1.01172 1.20838 0.92327 0.97423 0.84964 0.95252 1.22202 0.96932 1.01031 1.01299 1.42689 1.57847 1.20850 1.17215 1.18887 1.22328 0.96701 0.96826 0.93655 1.25548 1.02962 1.00384 0.97303 1.69914 1.49976 1.32304 1.11949 0.85632 0.78581 0.79296 0.79252 1.20807 1.23681 1.14439 1.21317 0.93194 0.95165 1.14877 0.86606 0.88862 0.90310 0.87348 0.89506 0.85906 0.78212 0.87217 0.90641 0.92521 0.86927 0.88012 0.91740 0.90930 0.95187 0.79748 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.42 9.01 71.23 0.64 -1.78 16 2 C 0.16 5.48 7.46 44.94 0.34 5.82 16 3 N -0.30 -11.32 12.81 -43.67 -0.56 -11.88 16 4 O -0.10 -3.96 12.06 29.72 0.36 -3.61 16 5 C 0.28 9.47 8.64 85.16 0.74 10.21 16 6 N -0.49 -13.95 10.25 -296.38 -3.04 -16.99 16 7 C 0.21 3.93 6.78 42.68 0.29 4.22 16 8 C -0.10 -0.86 10.14 71.24 0.72 -0.14 16 9 C -0.16 -2.87 7.68 22.65 0.17 -2.69 16 10 C 0.00 0.03 4.76 -19.76 -0.09 -0.07 16 11 C 0.56 15.73 6.18 86.83 0.54 16.26 16 12 O -0.55 -17.67 14.77 -3.80 -0.06 -17.72 16 13 N -0.58 -14.30 2.73 -850.03 -2.32 -16.62 16 14 C 0.06 1.26 8.71 127.77 1.11 2.37 16 15 C 0.11 2.65 5.06 86.38 0.44 3.09 16 16 C 0.15 5.05 3.20 44.99 0.14 5.19 16 17 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 18 C -0.15 -4.51 9.49 71.98 0.68 -3.83 16 19 N -0.74 -29.99 4.37 -322.92 -1.41 -31.40 16 20 C -0.22 -11.60 10.41 84.04 0.87 -10.73 16 21 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.99 -63.13 13.97 21.65 0.30 -62.83 16 24 Si 0.95 41.67 27.74 68.60 1.90 43.58 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.22 -7.63 5.05 99.48 0.50 -7.13 16 28 C -0.24 -7.98 6.19 -20.00 -0.12 -8.10 16 29 H 0.12 3.22 8.13 -2.39 -0.02 3.20 16 30 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.08 2.79 6.64 -2.39 -0.02 2.78 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.12 0.17 8.07 -2.39 -0.02 0.15 16 35 H 0.20 1.67 6.85 -2.91 -0.02 1.65 16 36 H 0.11 1.07 7.30 -2.39 -0.02 1.05 16 37 H 0.08 1.71 4.27 -2.38 -0.01 1.70 16 38 H 0.06 1.32 6.49 -2.39 -0.02 1.30 16 39 H 0.11 1.95 8.07 -2.38 -0.02 1.94 16 40 H 0.10 2.26 7.36 -2.39 -0.02 2.24 16 41 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.37 13.48 3.50 -92.71 -0.32 13.15 16 45 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -80.04 367.15 2.62 -77.42 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.51 Total: 23.82 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.94 Total: 16.24 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -7.03 Total: -139.72 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.30 Total: -21.33 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.90 Total: 43.58 kcal Total: -80.04 2.62 -77.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734336793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.819 kcal (2) G-P(sol) polarization free energy of solvation -80.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds