Wall clock time and date at job start Tue Mar 31 2020 16:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29811 * 126.33102 * 2 1 4 4 O 1.41329 * 109.72377 * 180.02562 * 3 2 1 5 5 C 1.34834 * 109.42497 * 0.02562 * 4 3 2 6 6 N 1.32442 * 133.10086 * 180.02562 * 5 4 3 7 7 C 1.31568 * 122.02956 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.17116 * 180.02562 * 7 6 5 9 9 C 1.38597 * 121.65256 * 359.68007 * 7 6 5 10 10 C 1.39442 * 119.20081 * 0.61288 * 9 7 6 11 11 C 1.47998 * 121.09991 * 179.69352 * 10 9 7 12 12 O 1.21532 * 120.00265 * 234.17663 * 11 10 9 13 13 N 1.34776 * 120.00176 * 54.18747 * 11 10 9 14 14 C 1.46500 * 119.99714 * 356.53750 * 13 11 10 15 15 C 1.46502 * 120.00278 * 176.54171 * 13 11 10 16 16 C 1.52998 * 109.47410 * 89.99780 * 15 13 11 17 17 H 1.08997 * 109.47128 * 64.99949 * 16 15 13 18 18 C 1.52998 * 109.47133 * 185.00146 * 16 15 13 19 19 N 1.46504 * 109.46882 * 304.99868 * 16 15 13 20 20 C 1.36931 * 119.99781 * 154.99758 * 19 16 15 21 21 H 1.08005 * 120.00421 * 0.02562 * 20 19 16 22 22 C 1.38810 * 120.00203 * 180.02562 * 20 19 16 23 23 N 1.31621 * 120.00397 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99998 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46719 * 90.00014 * 24 22 20 26 26 H 1.48494 * 109.47550 * 210.00620 * 24 22 20 27 27 H 1.48507 * 109.46890 * 330.00564 * 24 22 20 28 28 C 1.40529 * 106.85833 * 359.97438 * 5 4 3 29 29 H 1.08998 * 109.47063 * 263.71481 * 1 2 3 30 30 H 1.08999 * 109.47258 * 23.71929 * 1 2 3 31 31 H 1.09004 * 109.47054 * 143.71340 * 1 2 3 32 32 H 1.08999 * 109.46747 * 90.00611 * 8 7 6 33 33 H 1.08996 * 109.46850 * 209.99949 * 8 7 6 34 34 H 1.08998 * 109.47390 * 330.00209 * 8 7 6 35 35 H 1.07998 * 120.39888 * 180.30688 * 9 7 6 36 36 H 1.08997 * 109.46986 * 275.20827 * 14 13 11 37 37 H 1.09000 * 109.47112 * 35.21105 * 14 13 11 38 38 H 1.09009 * 109.46862 * 155.21317 * 14 13 11 39 39 H 1.09006 * 109.47318 * 210.00096 * 15 13 11 40 40 H 1.08998 * 109.46938 * 329.99431 * 15 13 11 41 41 H 1.09003 * 109.47332 * 299.99872 * 18 16 15 42 42 H 1.08997 * 109.47275 * 59.99892 * 18 16 15 43 43 H 1.09001 * 109.47094 * 179.97438 * 18 16 15 44 44 H 0.97001 * 120.00278 * 335.00557 * 19 16 15 45 45 H 0.96996 * 120.00108 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6418 -0.0006 5 6 3.6967 -0.7049 -0.0015 6 7 4.7070 -1.5612 -0.0019 7 6 4.5182 -2.8632 -0.0024 8 6 5.7150 -3.7791 -0.0023 9 6 3.2462 -3.4137 0.0041 10 6 2.1384 -2.5668 -0.0018 11 6 0.7614 -3.1092 -0.0020 12 8 -0.0281 -2.7626 -0.8584 13 7 0.3830 -3.9875 0.9477 14 6 1.3554 -4.4633 1.9347 15 6 -1.0008 -4.4665 0.9929 16 6 -1.1324 -5.7273 0.1363 17 1 -0.5358 -6.5277 0.5738 18 6 -2.6001 -6.1562 0.0822 19 7 -0.6550 -5.4480 -1.2203 20 6 -0.1914 -6.4686 -2.0067 21 1 -0.1780 -7.4797 -1.6270 22 6 0.2615 -6.2040 -3.2918 23 7 0.7067 -7.1851 -4.0479 24 14 0.2377 -4.4555 -3.9490 25 1 1.5240 -3.7877 -3.6255 26 1 0.0507 -4.4827 -5.4218 27 1 -0.8805 -3.7062 -3.3217 28 6 2.3735 -1.1780 -0.0010 29 1 -0.3633 -0.1125 1.0215 30 1 -0.3634 0.9408 -0.4134 31 1 -0.3633 -0.8284 -0.6082 32 1 6.0030 -4.0003 1.0255 33 1 5.4628 -4.7065 -0.5164 34 1 6.5446 -3.2930 -0.5156 35 1 3.1146 -4.4856 0.0085 36 1 1.9109 -5.3049 1.5209 37 1 2.0468 -3.6575 2.1813 38 1 0.8319 -4.7816 2.8363 39 1 -1.2720 -4.6972 2.0232 40 1 -1.6655 -3.6937 0.6067 41 1 -2.9553 -6.3640 1.0915 42 1 -3.1967 -5.3558 -0.3554 43 1 -2.6939 -7.0542 -0.5285 44 1 -0.6673 -4.5400 -1.5615 45 1 1.0228 -7.0002 -4.9461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734336795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:50 Heat of formation + Delta-G solvation = 70.539903 kcal Electronic energy + Delta-G solvation = -30106.666465 eV Core-core repulsion = 26128.301711 eV Total energy + Delta-G solvation = -3978.364754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.24822 -40.16264 -38.94003 -36.45387 -34.96693 -34.77622 -32.71492 -32.25453 -31.82176 -29.40170 -28.93592 -27.85780 -27.27381 -26.39686 -24.12332 -23.44095 -22.87979 -21.20125 -20.08679 -19.26145 -18.31742 -17.88106 -17.54939 -17.08722 -16.62741 -16.25979 -15.48630 -15.00156 -14.73420 -14.29758 -14.19342 -13.89707 -13.69083 -13.63644 -13.52747 -13.39119 -13.01001 -12.90551 -12.69327 -12.64995 -12.43330 -12.41373 -12.24358 -12.19281 -11.72141 -11.55098 -11.51609 -11.07453 -10.89417 -10.71151 -10.62106 -10.40239 -9.96371 -9.74237 -9.57770 -9.49653 -9.07418 -8.92341 -8.53674 -7.22528 -5.75955 -3.09610 0.04973 0.73071 1.72138 1.91033 2.54928 2.84840 3.27149 3.45608 3.51323 3.53075 3.62980 3.84800 4.10051 4.26306 4.38794 4.65430 4.76273 4.89601 4.99157 5.02014 5.14149 5.24035 5.26053 5.33244 5.35814 5.43671 5.46728 5.50819 5.54261 5.61333 5.64382 5.72960 5.76401 5.77191 5.93729 6.06550 6.12160 6.14553 6.37246 6.50314 6.68152 6.87820 6.93653 7.26790 7.42616 7.99730 8.10495 8.44195 9.28498 10.00851 10.22169 11.41874 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.005127 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.989751 B = 5459.703771 C = 5895.963093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.159 3.841 3 N -0.281 5.281 4 O -0.084 6.084 5 C 0.296 3.704 6 N -0.475 5.475 7 C 0.205 3.795 8 C -0.108 4.108 9 C -0.169 4.169 10 C 0.016 3.984 11 C 0.564 3.436 12 O -0.509 6.509 13 N -0.590 5.590 14 C 0.074 3.926 15 C 0.106 3.894 16 C 0.160 3.840 17 H 0.055 0.945 18 C -0.164 4.164 19 N -0.748 5.748 20 C -0.240 4.240 21 H 0.087 0.913 22 C 0.008 3.992 23 N -0.935 5.935 24 Si 0.874 3.126 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.265 1.265 28 C -0.223 4.223 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.376 0.624 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 7.964 16.251 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.022 4.022 3 N -0.029 5.029 4 O -0.087 6.087 5 C 0.113 3.887 6 N -0.196 5.196 7 C 0.062 3.938 8 C -0.166 4.166 9 C -0.190 4.190 10 C 0.003 3.997 11 C 0.350 3.650 12 O -0.385 6.385 13 N -0.322 5.322 14 C -0.069 4.069 15 C -0.017 4.017 16 C 0.049 3.951 17 H 0.073 0.927 18 C -0.225 4.225 19 N -0.396 5.396 20 C -0.370 4.370 21 H 0.105 0.895 22 C -0.188 4.188 23 N -0.583 5.583 24 Si 0.705 3.295 25 H -0.215 1.215 26 H -0.223 1.223 27 H -0.190 1.190 28 C -0.230 4.230 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.139 0.861 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.180 0.820 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.214 0.786 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.746 9.715 15.719 18.855 hybrid contribution -0.737 0.047 -0.751 1.053 sum 3.009 9.762 14.968 18.122 Atomic orbital electron populations 1.20926 0.83840 1.06743 1.05053 1.24511 0.98490 0.88869 0.90348 1.80062 0.84085 1.17184 1.21552 1.89228 1.23324 1.14906 1.81263 1.20258 0.89093 0.86395 0.92936 1.66346 1.32881 1.02394 1.18022 1.21404 0.95089 0.88117 0.89213 1.20904 0.94144 0.97420 1.04097 1.22283 0.91198 1.02225 1.03296 1.19914 0.95140 0.91070 0.93582 1.17888 0.86042 0.79265 0.81774 1.90688 1.52505 1.59775 1.35509 1.47523 1.11746 1.43072 1.29829 1.21969 0.92881 1.00091 0.91982 1.22085 0.80775 0.98314 1.00525 1.20604 0.93680 0.94051 0.86767 0.92748 1.22380 0.98408 1.02098 0.99620 1.43109 1.76648 1.08347 1.11454 1.19034 1.33593 0.89756 0.94657 0.89527 1.24588 1.01100 0.96464 0.96625 1.69702 1.48803 1.30163 1.09617 0.86675 0.78830 0.86205 0.77810 1.21535 1.22306 1.19048 1.21166 0.93493 0.94150 1.14161 0.88931 0.89397 0.86105 0.89111 0.89034 0.89516 0.81992 0.91487 0.91703 0.90381 0.89989 0.89903 0.94202 0.93414 0.92037 0.78618 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.92 36.01 0.36 -0.94 16 2 C 0.16 2.35 7.46 -80.23 -0.60 1.75 16 3 N -0.28 -4.44 12.81 34.84 0.45 -3.99 16 4 O -0.08 -1.41 12.06 7.66 0.09 -1.31 16 5 C 0.30 4.83 8.64 -16.43 -0.14 4.69 16 6 N -0.48 -7.17 10.25 -9.24 -0.09 -7.26 16 7 C 0.20 2.62 6.78 -82.57 -0.56 2.06 16 8 C -0.11 -0.95 10.14 36.01 0.37 -0.58 16 9 C -0.17 -2.31 7.73 -39.00 -0.30 -2.61 16 10 C 0.02 0.25 4.71 -104.46 -0.49 -0.24 16 11 C 0.56 9.29 6.08 -12.26 -0.07 9.22 16 12 O -0.51 -9.95 10.94 5.34 0.06 -9.89 16 13 N -0.59 -8.03 2.77 -182.63 -0.51 -8.54 16 14 C 0.07 0.71 9.24 59.85 0.55 1.27 16 15 C 0.11 1.42 5.18 -4.04 -0.02 1.40 16 16 C 0.16 2.78 3.20 -67.93 -0.22 2.56 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 C -0.16 -2.63 9.49 37.16 0.35 -2.28 16 19 N -0.75 -17.22 4.33 -53.43 -0.23 -17.45 16 20 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 21 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 22 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 24 Si 0.87 23.66 27.32 -169.99 -4.64 19.02 16 25 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 26 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 27 H -0.27 -7.07 6.52 56.52 0.37 -6.70 16 28 C -0.22 -3.55 6.19 -104.83 -0.65 -4.20 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.12 1.72 5.01 -51.93 -0.26 1.46 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.16 2.02 6.96 -52.49 -0.37 1.65 16 36 H 0.07 0.65 7.35 -51.93 -0.38 0.27 16 37 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 38 H 0.08 0.55 7.83 -51.92 -0.41 0.14 16 39 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 40 H 0.08 1.18 7.47 -51.93 -0.39 0.79 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.38 9.02 2.75 -40.82 -0.11 8.91 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -35.82 367.16 -6.30 -42.12 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.05 Total: 4.87 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.68 Total: 5.46 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: 0.39 Total: -65.81 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.15 Total: -11.20 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.64 Total: 19.02 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.82 -6.30 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734336795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.665 kcal (2) G-P(sol) polarization free energy of solvation -35.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds