Wall clock time and date at job start Tue Mar 31 2020 16:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29811 * 126.33102 * 2 1 4 4 O 1.41329 * 109.72377 * 180.02562 * 3 2 1 5 5 C 1.34834 * 109.42497 * 0.02562 * 4 3 2 6 6 N 1.32442 * 133.10086 * 180.02562 * 5 4 3 7 7 C 1.31568 * 122.02956 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.17116 * 180.02562 * 7 6 5 9 9 C 1.38597 * 121.65256 * 359.68007 * 7 6 5 10 10 C 1.39442 * 119.20081 * 0.61288 * 9 7 6 11 11 C 1.47998 * 121.09991 * 179.69352 * 10 9 7 12 12 O 1.21532 * 120.00265 * 234.17663 * 11 10 9 13 13 N 1.34776 * 120.00176 * 54.18747 * 11 10 9 14 14 C 1.46500 * 119.99714 * 356.53750 * 13 11 10 15 15 C 1.46502 * 120.00278 * 176.54171 * 13 11 10 16 16 C 1.52998 * 109.47410 * 89.99780 * 15 13 11 17 17 H 1.08997 * 109.47128 * 64.99949 * 16 15 13 18 18 C 1.52998 * 109.47133 * 185.00146 * 16 15 13 19 19 N 1.46504 * 109.46882 * 304.99868 * 16 15 13 20 20 C 1.36931 * 119.99781 * 154.99758 * 19 16 15 21 21 H 1.08005 * 120.00421 * 0.02562 * 20 19 16 22 22 C 1.38810 * 120.00203 * 180.02562 * 20 19 16 23 23 N 1.31621 * 120.00397 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99998 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46719 * 90.00014 * 24 22 20 26 26 H 1.48494 * 109.47550 * 210.00620 * 24 22 20 27 27 H 1.48507 * 109.46890 * 330.00564 * 24 22 20 28 28 C 1.40529 * 106.85833 * 359.97438 * 5 4 3 29 29 H 1.08998 * 109.47063 * 263.71481 * 1 2 3 30 30 H 1.08999 * 109.47258 * 23.71929 * 1 2 3 31 31 H 1.09004 * 109.47054 * 143.71340 * 1 2 3 32 32 H 1.08999 * 109.46747 * 90.00611 * 8 7 6 33 33 H 1.08996 * 109.46850 * 209.99949 * 8 7 6 34 34 H 1.08998 * 109.47390 * 330.00209 * 8 7 6 35 35 H 1.07998 * 120.39888 * 180.30688 * 9 7 6 36 36 H 1.08997 * 109.46986 * 275.20827 * 14 13 11 37 37 H 1.09000 * 109.47112 * 35.21105 * 14 13 11 38 38 H 1.09009 * 109.46862 * 155.21317 * 14 13 11 39 39 H 1.09006 * 109.47318 * 210.00096 * 15 13 11 40 40 H 1.08998 * 109.46938 * 329.99431 * 15 13 11 41 41 H 1.09003 * 109.47332 * 299.99872 * 18 16 15 42 42 H 1.08997 * 109.47275 * 59.99892 * 18 16 15 43 43 H 1.09001 * 109.47094 * 179.97438 * 18 16 15 44 44 H 0.97001 * 120.00278 * 335.00557 * 19 16 15 45 45 H 0.96996 * 120.00108 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0458 0.0000 4 8 3.6304 0.6418 -0.0006 5 6 3.6967 -0.7049 -0.0015 6 7 4.7070 -1.5612 -0.0019 7 6 4.5182 -2.8632 -0.0024 8 6 5.7150 -3.7791 -0.0023 9 6 3.2462 -3.4137 0.0041 10 6 2.1384 -2.5668 -0.0018 11 6 0.7614 -3.1092 -0.0020 12 8 -0.0281 -2.7626 -0.8584 13 7 0.3830 -3.9875 0.9477 14 6 1.3554 -4.4633 1.9347 15 6 -1.0008 -4.4665 0.9929 16 6 -1.1324 -5.7273 0.1363 17 1 -0.5358 -6.5277 0.5738 18 6 -2.6001 -6.1562 0.0822 19 7 -0.6550 -5.4480 -1.2203 20 6 -0.1914 -6.4686 -2.0067 21 1 -0.1780 -7.4797 -1.6270 22 6 0.2615 -6.2040 -3.2918 23 7 0.7067 -7.1851 -4.0479 24 14 0.2377 -4.4555 -3.9490 25 1 1.5240 -3.7877 -3.6255 26 1 0.0507 -4.4827 -5.4218 27 1 -0.8805 -3.7062 -3.3217 28 6 2.3735 -1.1780 -0.0010 29 1 -0.3633 -0.1125 1.0215 30 1 -0.3634 0.9408 -0.4134 31 1 -0.3633 -0.8284 -0.6082 32 1 6.0030 -4.0003 1.0255 33 1 5.4628 -4.7065 -0.5164 34 1 6.5446 -3.2930 -0.5156 35 1 3.1146 -4.4856 0.0085 36 1 1.9109 -5.3049 1.5209 37 1 2.0468 -3.6575 2.1813 38 1 0.8319 -4.7816 2.8363 39 1 -1.2720 -4.6972 2.0232 40 1 -1.6655 -3.6937 0.6067 41 1 -2.9553 -6.3640 1.0915 42 1 -3.1967 -5.3558 -0.3554 43 1 -2.6939 -7.0542 -0.5285 44 1 -0.6673 -4.5400 -1.5615 45 1 1.0228 -7.0002 -4.9461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734336795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:49 Heat of formation + Delta-G solvation = 44.282506 kcal Electronic energy + Delta-G solvation = -30107.805071 eV Core-core repulsion = 26128.301711 eV Total energy + Delta-G solvation = -3979.503360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38424 -41.33408 -40.05608 -37.83046 -36.26696 -36.02447 -34.22526 -33.50163 -33.16470 -31.17745 -29.95189 -28.84157 -28.21501 -27.48853 -25.50439 -25.09193 -24.02614 -22.34971 -21.51035 -20.46260 -19.74038 -19.40397 -18.71851 -18.29512 -17.78010 -17.41137 -16.90126 -16.56344 -16.04456 -15.62035 -15.27702 -15.22214 -14.89130 -14.70875 -14.60167 -14.52623 -14.41983 -14.29551 -13.89048 -13.80159 -13.61053 -13.40059 -13.17394 -13.15976 -13.14454 -12.99691 -12.75464 -12.59224 -12.32981 -12.17733 -12.15271 -11.81121 -11.79113 -11.54242 -11.01607 -10.86911 -10.69650 -10.16058 -9.67913 -9.21996 -8.03297 -5.28983 -1.06107 -0.40571 0.60134 0.76561 1.24440 1.31492 1.38552 1.47249 1.77829 2.16350 2.43577 2.44030 2.75955 3.02986 3.21193 3.30077 3.35393 3.71611 3.73381 3.93512 4.01845 4.14390 4.22193 4.28602 4.42074 4.44640 4.49664 4.51048 4.64438 4.65672 4.70965 4.75050 4.81155 4.85233 4.89984 4.94415 5.02560 5.08971 5.26922 5.28709 5.43767 5.64724 5.72911 5.83187 6.17789 6.24093 6.33654 6.90941 7.15814 7.98771 8.14942 9.18584 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.005127 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.989751 B = 5459.703771 C = 5895.963093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.161 3.839 3 N -0.295 5.295 4 O -0.104 6.104 5 C 0.281 3.719 6 N -0.489 5.489 7 C 0.210 3.790 8 C -0.107 4.107 9 C -0.168 4.168 10 C 0.004 3.996 11 C 0.557 3.443 12 O -0.547 6.547 13 N -0.585 5.585 14 C 0.066 3.934 15 C 0.111 3.889 16 C 0.148 3.852 17 H 0.057 0.943 18 C -0.157 4.157 19 N -0.755 5.755 20 C -0.202 4.202 21 H 0.067 0.933 22 C -0.051 4.051 23 N -0.979 5.979 24 Si 0.926 3.074 25 H -0.297 1.297 26 H -0.306 1.306 27 H -0.261 1.261 28 C -0.239 4.239 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.175 0.825 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.031 0.969 44 H 0.373 0.627 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 7.787 19.148 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.019 4.019 3 N -0.045 5.045 4 O -0.105 6.105 5 C 0.098 3.902 6 N -0.211 5.211 7 C 0.067 3.933 8 C -0.164 4.164 9 C -0.188 4.188 10 C -0.009 4.009 11 C 0.344 3.656 12 O -0.426 6.426 13 N -0.315 5.315 14 C -0.076 4.076 15 C -0.011 4.011 16 C 0.039 3.961 17 H 0.075 0.925 18 C -0.217 4.217 19 N -0.403 5.403 20 C -0.334 4.334 21 H 0.085 0.915 22 C -0.243 4.243 23 N -0.631 5.631 24 Si 0.758 3.242 25 H -0.225 1.225 26 H -0.234 1.234 27 H -0.187 1.187 28 C -0.246 4.246 29 H 0.137 0.863 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.192 0.808 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.211 0.789 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.319 9.541 18.706 21.259 hybrid contribution -0.624 -0.014 -1.491 1.617 sum 2.695 9.527 17.215 19.859 Atomic orbital electron populations 1.21002 0.81899 1.06766 1.06397 1.24955 0.99561 0.88328 0.89075 1.80034 0.83725 1.17638 1.23065 1.89173 1.24192 1.15482 1.81690 1.20502 0.89812 0.86360 0.93519 1.66466 1.32756 1.03148 1.18712 1.22093 0.96269 0.87761 0.87131 1.21093 0.92390 0.96708 1.06182 1.22518 0.91107 1.02627 1.02587 1.20010 0.95430 0.91149 0.94312 1.18111 0.85953 0.79650 0.81881 1.90663 1.53456 1.61260 1.37215 1.47672 1.12537 1.41814 1.29467 1.22260 0.92812 1.00284 0.92227 1.22114 0.80746 0.95865 1.02398 1.20994 0.94231 0.96424 0.84406 0.92463 1.22243 0.97237 1.00423 1.01795 1.43288 1.76564 1.07031 1.13409 1.19083 1.30030 0.89953 0.94294 0.91467 1.25053 1.03122 0.98505 0.97604 1.69808 1.51811 1.31576 1.09939 0.85835 0.78348 0.83435 0.76582 1.22467 1.23363 1.18664 1.21311 0.93562 0.94688 1.15044 0.86308 0.87813 0.87906 0.86071 0.87944 0.89227 0.80780 0.91521 0.90937 0.86865 0.84754 0.90548 0.89676 0.93865 0.94988 0.78945 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.36 9.92 71.24 0.71 -1.65 16 2 C 0.16 4.73 7.46 44.94 0.34 5.06 16 3 N -0.29 -9.34 12.81 -43.67 -0.56 -9.90 16 4 O -0.10 -3.55 12.06 29.79 0.36 -3.19 16 5 C 0.28 9.18 8.64 85.16 0.74 9.91 16 6 N -0.49 -14.46 10.25 -296.38 -3.04 -17.50 16 7 C 0.21 5.06 6.78 42.68 0.29 5.35 16 8 C -0.11 -1.59 10.14 71.24 0.72 -0.87 16 9 C -0.17 -4.33 7.73 22.65 0.18 -4.15 16 10 C 0.00 0.11 4.71 -19.76 -0.09 0.02 16 11 C 0.56 17.49 6.08 86.83 0.53 18.02 16 12 O -0.55 -20.91 10.94 -3.82 -0.04 -20.96 16 13 N -0.59 -14.11 2.77 -850.01 -2.36 -16.46 16 14 C 0.07 1.01 9.24 127.77 1.18 2.19 16 15 C 0.11 2.54 5.18 86.38 0.45 2.99 16 16 C 0.15 4.72 3.20 44.99 0.14 4.86 16 17 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 18 C -0.16 -4.56 9.49 71.98 0.68 -3.87 16 19 N -0.76 -33.79 4.33 -322.94 -1.40 -35.19 16 20 C -0.20 -11.07 10.41 84.03 0.87 -10.20 16 21 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 22 C -0.05 -3.05 5.50 84.86 0.47 -2.59 16 23 N -0.98 -62.62 13.97 21.65 0.30 -62.32 16 24 Si 0.93 50.03 27.32 68.60 1.87 51.90 16 25 H -0.30 -16.24 7.11 99.48 0.71 -15.53 16 26 H -0.31 -16.80 7.11 99.48 0.71 -16.09 16 27 H -0.26 -13.76 6.52 99.48 0.65 -13.11 16 28 C -0.24 -7.55 6.19 -20.00 -0.12 -7.67 16 29 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 2.87 5.01 -2.38 -0.01 2.85 16 32 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.35 8.07 -2.39 -0.02 1.33 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.17 3.97 6.96 -2.91 -0.02 3.95 16 36 H 0.07 1.07 7.35 -2.39 -0.02 1.05 16 37 H 0.07 1.04 6.54 -2.39 -0.02 1.02 16 38 H 0.11 0.97 7.83 -2.38 -0.02 0.95 16 39 H 0.13 1.74 7.86 -2.38 -0.02 1.72 16 40 H 0.08 1.92 7.47 -2.39 -0.02 1.90 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.37 17.49 2.75 -92.71 -0.25 17.24 16 45 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -80.75 367.16 2.93 -77.82 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.72 Total: 18.39 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 7.07 Total: 17.41 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -7.05 Total: -141.38 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.32 Total: -24.14 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.87 Total: 51.90 kcal Total: -80.75 2.93 -77.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734336795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.105 kcal (2) G-P(sol) polarization free energy of solvation -80.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds