Wall clock time and date at job start Tue Mar 31 2020 16:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29808 * 126.33334 * 2 1 4 4 O 1.41327 * 109.72450 * 179.97438 * 3 2 1 5 5 C 1.34844 * 109.42304 * 0.02562 * 4 3 2 6 6 N 1.32442 * 133.09709 * 179.97438 * 5 4 3 7 7 C 1.31558 * 122.02811 * 180.02562 * 6 5 4 8 8 C 1.50698 * 119.17721 * 180.02562 * 7 6 5 9 9 C 1.38598 * 121.65399 * 0.27167 * 7 6 5 10 10 C 1.39435 * 119.20016 * 359.47704 * 9 7 6 11 11 C 1.48006 * 121.10630 * 180.24165 * 10 9 7 12 12 O 1.21524 * 120.00596 * 170.66164 * 11 10 9 13 13 N 1.34783 * 119.99774 * 350.65525 * 11 10 9 14 14 C 1.46497 * 119.99842 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46745 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46807 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.46946 * 179.97438 * 16 15 14 18 18 C 1.46501 * 119.99702 * 89.99902 * 17 16 15 19 19 C 1.36939 * 120.00485 * 269.99877 * 17 16 15 20 20 H 1.07998 * 119.99621 * 153.49382 * 19 17 16 21 21 C 1.38808 * 119.99643 * 333.49993 * 19 17 16 22 22 N 1.31623 * 119.99988 * 157.81512 * 21 19 17 23 23 Si 1.86796 * 120.00228 * 337.81227 * 21 19 17 24 24 H 1.48498 * 109.47141 * 95.48040 * 23 21 19 25 25 H 1.48496 * 109.47167 * 215.48207 * 23 21 19 26 26 H 1.48499 * 109.47309 * 335.48460 * 23 21 19 27 27 C 1.40514 * 106.85657 * 359.97438 * 5 4 3 28 28 H 1.08996 * 109.47189 * 261.56582 * 1 2 3 29 29 H 1.08996 * 109.46896 * 21.56906 * 1 2 3 30 30 H 1.09005 * 109.47187 * 141.56389 * 1 2 3 31 31 H 1.09005 * 109.47382 * 89.99391 * 8 7 6 32 32 H 1.08998 * 109.47389 * 209.99697 * 8 7 6 33 33 H 1.09002 * 109.46720 * 329.99517 * 8 7 6 34 34 H 1.08002 * 120.40013 * 179.72595 * 9 7 6 35 35 H 0.97000 * 119.99919 * 0.02562 * 13 11 10 36 36 H 1.08998 * 109.47140 * 300.00354 * 14 13 11 37 37 H 1.08998 * 109.47360 * 60.00557 * 14 13 11 38 38 H 1.09007 * 109.46942 * 299.99671 * 15 14 13 39 39 H 1.08994 * 109.47638 * 60.00165 * 15 14 13 40 40 H 1.08998 * 109.47412 * 299.99556 * 16 15 14 41 41 H 1.09003 * 109.47284 * 60.00109 * 16 15 14 42 42 H 1.09006 * 109.47470 * 95.04098 * 18 17 16 43 43 H 1.08998 * 109.47424 * 215.04336 * 18 17 16 44 44 H 1.09005 * 109.47222 * 335.04591 * 18 17 16 45 45 H 0.96995 * 120.00415 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0457 0.0000 4 8 3.6304 0.6417 0.0006 5 6 3.6966 -0.7051 0.0004 6 7 4.7069 -1.5614 0.0003 7 6 4.5181 -2.8633 -0.0004 8 6 5.7147 -3.7793 0.0002 9 6 3.2461 -3.4138 -0.0066 10 6 2.1384 -2.5669 -0.0013 11 6 0.7612 -3.1092 -0.0023 12 8 -0.1845 -2.3665 0.1732 13 7 0.5561 -4.4269 -0.1979 14 6 -0.8071 -4.9636 -0.1995 15 6 -0.7602 -6.4738 -0.4403 16 6 -2.1839 -7.0343 -0.4426 17 7 -2.1390 -8.4803 -0.6738 18 6 -2.0408 -9.4008 0.4616 19 6 -2.1890 -8.9714 -1.9511 20 1 -1.7450 -9.9291 -2.1791 21 6 -2.8101 -8.2382 -2.9528 22 7 -2.5029 -8.4551 -4.2141 23 14 -4.0821 -6.9436 -2.5107 24 1 -3.4297 -5.6113 -2.4435 25 1 -5.1466 -6.9218 -3.5458 26 1 -4.6811 -7.2684 -1.1913 27 6 2.3735 -1.1781 0.0003 28 1 -0.3633 -0.1507 1.0165 29 1 -0.3633 0.9557 -0.3778 30 1 -0.3634 -0.8050 -0.6389 31 1 6.0025 -4.0005 1.0280 32 1 5.4627 -4.7067 -0.5142 33 1 6.5445 -3.2932 -0.5129 34 1 3.1145 -4.4857 -0.0115 35 1 1.3109 -5.0198 -0.3377 36 1 -1.2773 -4.7639 0.7633 37 1 -1.3844 -4.4868 -0.9916 38 1 -0.2898 -6.6738 -1.4032 39 1 -0.1830 -6.9504 0.3519 40 1 -2.6546 -6.8344 0.5199 41 1 -2.7607 -6.5577 -1.2352 42 1 -3.0381 -9.7399 0.7419 43 1 -1.4305 -10.2594 0.1815 44 1 -1.5806 -8.8881 1.3063 45 1 -2.9372 -7.9430 -4.9141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752036343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:01 Heat of formation + Delta-G solvation = 85.719925 kcal Electronic energy + Delta-G solvation = -28066.819520 eV Core-core repulsion = 24089.113021 eV Total energy + Delta-G solvation = -3977.706499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.44811 -40.16286 -39.13512 -36.81056 -35.31288 -34.85628 -33.11828 -32.51858 -31.78050 -30.81494 -28.95128 -28.02097 -26.74063 -25.87097 -24.60974 -23.26887 -21.97941 -21.59487 -21.00170 -20.05792 -18.46465 -18.11379 -17.65274 -16.87362 -16.81821 -16.04117 -15.87595 -15.47666 -15.16849 -14.76224 -14.52729 -14.33838 -14.05424 -13.75964 -13.67447 -13.43320 -13.35878 -13.18575 -12.96553 -12.79938 -12.53192 -12.39241 -12.27271 -11.88457 -11.73660 -11.44998 -11.38855 -11.36003 -11.10158 -10.67143 -10.56398 -10.45787 -9.91790 -9.87108 -9.78561 -9.36256 -9.35581 -9.21440 -8.62806 -7.10364 -6.05077 -3.39918 -0.25623 0.39242 1.53800 1.73577 2.41423 2.70990 3.18718 3.21061 3.35986 3.41060 3.43556 3.69534 3.90131 4.00922 4.17376 4.42469 4.54849 4.67026 4.79412 4.83359 5.08454 5.12338 5.21509 5.26048 5.28488 5.30256 5.39145 5.44697 5.49750 5.51928 5.64263 5.77043 5.83194 5.88938 6.06440 6.10441 6.12175 6.32648 6.46437 6.54292 6.58926 6.73012 6.75006 7.16704 7.19351 7.85066 7.87927 8.23413 8.86141 9.62998 9.96966 11.10780 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.002806 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.033233 B = 9976.588055 C =10908.072893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.164 3.836 3 N -0.283 5.283 4 O -0.085 6.085 5 C 0.296 3.704 6 N -0.471 5.471 7 C 0.204 3.796 8 C -0.109 4.109 9 C -0.176 4.176 10 C 0.005 3.995 11 C 0.547 3.453 12 O -0.517 6.517 13 N -0.708 5.708 14 C 0.116 3.884 15 C -0.149 4.149 16 C 0.144 3.856 17 N -0.615 5.615 18 C 0.127 3.873 19 C -0.267 4.267 20 H 0.086 0.914 21 C 0.025 3.975 22 N -0.903 5.903 23 Si 0.888 3.112 24 H -0.286 1.286 25 H -0.305 1.305 26 H -0.275 1.275 27 C -0.210 4.210 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.010 0.990 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.662 10.639 10.861 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.016 4.016 3 N -0.032 5.032 4 O -0.087 6.087 5 C 0.113 3.887 6 N -0.192 5.192 7 C 0.060 3.940 8 C -0.167 4.167 9 C -0.197 4.197 10 C -0.008 4.008 11 C 0.333 3.667 12 O -0.395 6.395 13 N -0.358 5.358 14 C -0.007 4.007 15 C -0.190 4.190 16 C 0.017 3.983 17 N -0.338 5.338 18 C -0.019 4.019 19 C -0.395 4.395 20 H 0.103 0.897 21 C -0.174 4.174 22 N -0.545 5.545 23 Si 0.721 3.279 24 H -0.215 1.215 25 H -0.233 1.233 26 H -0.201 1.201 27 C -0.217 4.217 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.174 0.826 35 H 0.238 0.762 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.028 0.972 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.887 12.890 10.819 21.196 hybrid contribution -1.122 -0.545 0.012 1.247 sum 11.766 12.345 10.832 20.203 Atomic orbital electron populations 1.20979 0.82886 1.04451 1.06040 1.24703 0.98960 0.88370 0.89599 1.80139 0.83821 1.17157 1.22034 1.89264 1.23778 1.14660 1.81027 1.20335 0.89053 0.86661 0.92631 1.66348 1.33044 1.02406 1.17426 1.21394 0.95062 0.88212 0.89311 1.20913 0.94266 0.97175 1.04306 1.22175 0.91732 1.01495 1.04312 1.20015 0.94610 0.91218 0.94919 1.18102 0.87750 0.82754 0.78092 1.90748 1.43361 1.56610 1.48789 1.46087 1.10892 1.07542 1.71310 1.21620 0.81379 0.95368 1.02363 1.22447 1.02200 0.91246 1.03108 1.21028 0.93176 0.85454 0.98609 1.44107 1.86565 0.99584 1.03568 1.21035 0.98035 0.93584 0.89222 1.18884 1.31514 1.06439 0.82708 0.89673 1.25210 0.98553 0.98688 0.94963 1.69845 1.42532 1.42936 0.99228 0.86789 0.82634 0.81144 0.77319 1.21492 1.23344 1.20083 1.21271 0.93395 0.94414 1.12600 0.88394 0.90877 0.85864 0.89044 0.89175 0.89407 0.82599 0.76233 0.91137 0.90962 0.90252 0.91843 0.93679 0.93366 0.97183 0.94162 0.94864 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 8.55 36.01 0.31 -0.62 16 2 C 0.16 2.10 7.44 -80.24 -0.60 1.50 16 3 N -0.28 -3.95 12.81 34.84 0.45 -3.50 16 4 O -0.09 -1.24 12.06 7.63 0.09 -1.15 16 5 C 0.30 3.99 8.64 -16.43 -0.14 3.85 16 6 N -0.47 -5.63 10.25 -9.24 -0.09 -5.72 16 7 C 0.20 1.79 6.78 -82.58 -0.56 1.23 16 8 C -0.11 -0.54 10.15 36.00 0.37 -0.17 16 9 C -0.18 -1.46 9.19 -39.00 -0.36 -1.82 16 10 C 0.01 0.06 5.93 -104.46 -0.62 -0.56 16 11 C 0.55 6.61 7.77 -12.25 -0.10 6.51 16 12 O -0.52 -7.20 11.45 5.34 0.06 -7.14 16 13 N -0.71 -7.85 5.51 -61.20 -0.34 -8.19 16 14 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 15 C -0.15 -2.33 5.65 -26.73 -0.15 -2.49 16 16 C 0.14 2.81 4.45 -4.04 -0.02 2.79 16 17 N -0.61 -13.69 2.68 -181.11 -0.49 -14.18 16 18 C 0.13 2.31 10.69 59.85 0.64 2.95 16 19 C -0.27 -7.12 10.06 -15.06 -0.15 -7.27 16 20 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 21 C 0.03 0.70 5.36 -17.43 -0.09 0.61 16 22 N -0.90 -26.63 13.97 55.49 0.78 -25.86 16 23 Si 0.89 21.65 24.66 -169.99 -4.19 17.46 16 24 H -0.29 -6.63 6.78 56.52 0.38 -6.25 16 25 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 26 H -0.28 -6.59 6.98 56.52 0.39 -6.19 16 27 C -0.21 -2.69 6.15 -104.84 -0.64 -3.33 16 28 H 0.10 1.01 7.91 -51.93 -0.41 0.60 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.12 1.47 5.45 -52.30 -0.28 1.19 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.16 0.77 6.64 -52.49 -0.35 0.43 16 35 H 0.40 3.42 6.71 -40.82 -0.27 3.14 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.05 1.07 1.81 -51.93 -0.09 0.97 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 44 H 0.03 0.50 8.03 -51.93 -0.42 0.08 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -32.76 369.02 -6.37 -39.12 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.05 Total: -1.13 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.14 Total: 4.72 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.30 Total: -57.45 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.15 Total: -8.29 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.19 Total: 17.46 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.76 -6.37 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752036343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.844 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds