Wall clock time and date at job start Tue Mar 31 2020 16:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29808 * 126.33334 * 2 1 4 4 O 1.41327 * 109.72450 * 179.97438 * 3 2 1 5 5 C 1.34844 * 109.42304 * 0.02562 * 4 3 2 6 6 N 1.32442 * 133.09709 * 179.97438 * 5 4 3 7 7 C 1.31558 * 122.02811 * 180.02562 * 6 5 4 8 8 C 1.50698 * 119.17721 * 180.02562 * 7 6 5 9 9 C 1.38598 * 121.65399 * 0.27167 * 7 6 5 10 10 C 1.39435 * 119.20016 * 359.47704 * 9 7 6 11 11 C 1.48006 * 121.10630 * 180.24165 * 10 9 7 12 12 O 1.21524 * 120.00596 * 170.66164 * 11 10 9 13 13 N 1.34783 * 119.99774 * 350.65525 * 11 10 9 14 14 C 1.46497 * 119.99842 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46745 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46807 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.46946 * 179.97438 * 16 15 14 18 18 C 1.46501 * 119.99702 * 89.99902 * 17 16 15 19 19 C 1.36939 * 120.00485 * 269.99877 * 17 16 15 20 20 H 1.07998 * 119.99621 * 153.49382 * 19 17 16 21 21 C 1.38808 * 119.99643 * 333.49993 * 19 17 16 22 22 N 1.31623 * 119.99988 * 157.81512 * 21 19 17 23 23 Si 1.86796 * 120.00228 * 337.81227 * 21 19 17 24 24 H 1.48498 * 109.47141 * 95.48040 * 23 21 19 25 25 H 1.48496 * 109.47167 * 215.48207 * 23 21 19 26 26 H 1.48499 * 109.47309 * 335.48460 * 23 21 19 27 27 C 1.40514 * 106.85657 * 359.97438 * 5 4 3 28 28 H 1.08996 * 109.47189 * 261.56582 * 1 2 3 29 29 H 1.08996 * 109.46896 * 21.56906 * 1 2 3 30 30 H 1.09005 * 109.47187 * 141.56389 * 1 2 3 31 31 H 1.09005 * 109.47382 * 89.99391 * 8 7 6 32 32 H 1.08998 * 109.47389 * 209.99697 * 8 7 6 33 33 H 1.09002 * 109.46720 * 329.99517 * 8 7 6 34 34 H 1.08002 * 120.40013 * 179.72595 * 9 7 6 35 35 H 0.97000 * 119.99919 * 0.02562 * 13 11 10 36 36 H 1.08998 * 109.47140 * 300.00354 * 14 13 11 37 37 H 1.08998 * 109.47360 * 60.00557 * 14 13 11 38 38 H 1.09007 * 109.46942 * 299.99671 * 15 14 13 39 39 H 1.08994 * 109.47638 * 60.00165 * 15 14 13 40 40 H 1.08998 * 109.47412 * 299.99556 * 16 15 14 41 41 H 1.09003 * 109.47284 * 60.00109 * 16 15 14 42 42 H 1.09006 * 109.47470 * 95.04098 * 18 17 16 43 43 H 1.08998 * 109.47424 * 215.04336 * 18 17 16 44 44 H 1.09005 * 109.47222 * 335.04591 * 18 17 16 45 45 H 0.96995 * 120.00415 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0457 0.0000 4 8 3.6304 0.6417 0.0006 5 6 3.6966 -0.7051 0.0004 6 7 4.7069 -1.5614 0.0003 7 6 4.5181 -2.8633 -0.0004 8 6 5.7147 -3.7793 0.0002 9 6 3.2461 -3.4138 -0.0066 10 6 2.1384 -2.5669 -0.0013 11 6 0.7612 -3.1092 -0.0023 12 8 -0.1845 -2.3665 0.1732 13 7 0.5561 -4.4269 -0.1979 14 6 -0.8071 -4.9636 -0.1995 15 6 -0.7602 -6.4738 -0.4403 16 6 -2.1839 -7.0343 -0.4426 17 7 -2.1390 -8.4803 -0.6738 18 6 -2.0408 -9.4008 0.4616 19 6 -2.1890 -8.9714 -1.9511 20 1 -1.7450 -9.9291 -2.1791 21 6 -2.8101 -8.2382 -2.9528 22 7 -2.5029 -8.4551 -4.2141 23 14 -4.0821 -6.9436 -2.5107 24 1 -3.4297 -5.6113 -2.4435 25 1 -5.1466 -6.9218 -3.5458 26 1 -4.6811 -7.2684 -1.1913 27 6 2.3735 -1.1781 0.0003 28 1 -0.3633 -0.1507 1.0165 29 1 -0.3633 0.9557 -0.3778 30 1 -0.3634 -0.8050 -0.6389 31 1 6.0025 -4.0005 1.0280 32 1 5.4627 -4.7067 -0.5142 33 1 6.5445 -3.2932 -0.5129 34 1 3.1145 -4.4857 -0.0115 35 1 1.3109 -5.0198 -0.3377 36 1 -1.2773 -4.7639 0.7633 37 1 -1.3844 -4.4868 -0.9916 38 1 -0.2898 -6.6738 -1.4032 39 1 -0.1830 -6.9504 0.3519 40 1 -2.6546 -6.8344 0.5199 41 1 -2.7607 -6.5577 -1.2352 42 1 -3.0381 -9.7399 0.7419 43 1 -1.4305 -10.2594 0.1815 44 1 -1.5806 -8.8881 1.3063 45 1 -2.9372 -7.9430 -4.9141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752036343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:00 Heat of formation + Delta-G solvation = 61.137567 kcal Electronic energy + Delta-G solvation = -28067.885491 eV Core-core repulsion = 24089.113021 eV Total energy + Delta-G solvation = -3978.772470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.34315 -41.09847 -39.98657 -38.31846 -36.46405 -35.83358 -34.13173 -33.64730 -33.21018 -32.08945 -29.84653 -28.74451 -28.20403 -27.31676 -25.63477 -24.20782 -23.24799 -22.64372 -22.44783 -21.04024 -19.33843 -19.03051 -18.74893 -18.44421 -17.78920 -17.62381 -16.87982 -16.68360 -16.19130 -15.79136 -15.52142 -15.38321 -15.17102 -14.90237 -14.82845 -14.56541 -14.52189 -14.28779 -14.03102 -13.98099 -13.52764 -13.40831 -13.09769 -13.04410 -12.96666 -12.71194 -12.66363 -12.56697 -12.28142 -12.27057 -12.16276 -11.74156 -11.43479 -11.17268 -10.78912 -10.69168 -10.58097 -10.17992 -10.14211 -8.93322 -8.15692 -5.45417 -1.09838 -0.42438 0.61130 0.83068 1.29011 1.43662 1.51843 1.53194 1.77092 2.35649 2.41467 2.49374 2.83358 3.05410 3.15320 3.20241 3.40449 3.41425 3.77496 3.94621 4.04361 4.11408 4.18874 4.33419 4.36940 4.46947 4.49789 4.58960 4.64449 4.66590 4.75967 4.77911 4.79912 4.86657 4.90198 5.02559 5.11118 5.16567 5.22579 5.32703 5.37557 5.45006 5.79604 5.90379 6.14411 6.31838 6.38507 6.96066 6.97822 7.67227 8.01953 9.04093 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.002806 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.033233 B = 9976.588055 C =10908.072893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.163 3.837 3 N -0.304 5.304 4 O -0.108 6.108 5 C 0.275 3.725 6 N -0.491 5.491 7 C 0.207 3.793 8 C -0.109 4.109 9 C -0.155 4.155 10 C -0.004 4.004 11 C 0.549 3.451 12 O -0.538 6.538 13 N -0.697 5.697 14 C 0.126 3.874 15 C -0.133 4.133 16 C 0.133 3.867 17 N -0.629 5.629 18 C 0.123 3.877 19 C -0.251 4.251 20 H 0.052 0.948 21 C -0.031 4.031 22 N -0.953 5.953 23 Si 0.950 3.050 24 H -0.271 1.271 25 H -0.321 1.321 26 H -0.265 1.265 27 C -0.229 4.229 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.197 0.803 35 H 0.416 0.584 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.012 0.988 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.419 9.919 13.117 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.017 4.017 3 N -0.055 5.055 4 O -0.110 6.110 5 C 0.093 3.907 6 N -0.213 5.213 7 C 0.063 3.937 8 C -0.165 4.165 9 C -0.176 4.176 10 C -0.017 4.017 11 C 0.336 3.664 12 O -0.417 6.417 13 N -0.349 5.349 14 C 0.002 3.998 15 C -0.173 4.173 16 C 0.007 3.993 17 N -0.354 5.354 18 C -0.021 4.021 19 C -0.380 4.380 20 H 0.070 0.930 21 C -0.226 4.226 22 N -0.599 5.599 23 Si 0.783 3.217 24 H -0.199 1.199 25 H -0.251 1.251 26 H -0.190 1.190 27 C -0.236 4.236 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.214 0.786 35 H 0.255 0.745 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.030 0.970 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.677 12.167 13.130 22.528 hybrid contribution -1.237 -0.495 -0.624 1.472 sum 12.440 11.672 12.506 21.151 Atomic orbital electron populations 1.20964 0.81672 1.04826 1.06150 1.25038 0.99641 0.88416 0.88593 1.80088 0.83759 1.17936 1.23675 1.89186 1.24310 1.15838 1.81626 1.20551 0.89905 0.86382 0.93817 1.66448 1.33012 1.03626 1.18208 1.22194 0.96808 0.87511 0.87146 1.21127 0.92449 0.97165 1.05808 1.22652 0.90531 1.03085 1.01302 1.19994 0.94880 0.90762 0.96068 1.18189 0.87890 0.82714 0.77642 1.90748 1.44102 1.57176 1.49680 1.45839 1.10531 1.07455 1.71044 1.21349 0.82399 0.93705 1.02305 1.22161 0.99683 0.92621 1.02827 1.21188 0.95374 0.83668 0.99026 1.44280 1.86790 1.01459 1.02859 1.21188 0.98489 0.93384 0.89041 1.18819 1.29503 1.04898 0.84821 0.93019 1.25781 1.00536 1.01547 0.94784 1.69972 1.44307 1.45233 1.00339 0.85767 0.79672 0.79668 0.76624 1.19940 1.25133 1.19027 1.21384 0.93078 0.95261 1.13894 0.87861 0.89508 0.86761 0.87164 0.86335 0.89612 0.78588 0.74543 0.89764 0.93118 0.92741 0.89030 0.90695 0.95940 0.96994 0.94420 0.90883 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 8.55 71.24 0.61 -1.07 16 2 C 0.16 4.21 7.44 44.94 0.33 4.54 16 3 N -0.30 -8.79 12.81 -43.67 -0.56 -9.35 16 4 O -0.11 -3.30 12.06 29.69 0.36 -2.94 16 5 C 0.28 7.48 8.64 85.16 0.74 8.21 16 6 N -0.49 -11.27 10.25 -296.38 -3.04 -14.31 16 7 C 0.21 3.06 6.78 42.68 0.29 3.35 16 8 C -0.11 -0.65 10.15 71.24 0.72 0.07 16 9 C -0.16 -2.03 9.19 22.64 0.21 -1.83 16 10 C 0.00 -0.09 5.93 -19.76 -0.12 -0.21 16 11 C 0.55 11.99 7.77 86.83 0.67 12.67 16 12 O -0.54 -14.16 11.45 -3.79 -0.04 -14.20 16 13 N -0.70 -13.09 5.51 -465.82 -2.57 -15.66 16 14 C 0.13 3.02 5.67 86.38 0.49 3.51 16 15 C -0.13 -3.68 5.65 30.60 0.17 -3.51 16 16 C 0.13 4.75 4.45 86.38 0.38 5.14 16 17 N -0.63 -26.59 2.68 -726.91 -1.95 -28.54 16 18 C 0.12 4.10 10.69 127.77 1.37 5.46 16 19 C -0.25 -13.33 10.06 84.03 0.85 -12.48 16 20 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 21 C -0.03 -1.75 5.36 84.86 0.45 -1.29 16 22 N -0.95 -57.59 13.97 21.65 0.30 -57.29 16 23 Si 0.95 44.91 24.66 68.60 1.69 46.60 16 24 H -0.27 -11.98 6.78 99.48 0.67 -11.31 16 25 H -0.32 -15.84 7.11 99.48 0.71 -15.13 16 26 H -0.27 -11.89 6.98 99.48 0.69 -11.20 16 27 C -0.23 -5.79 6.15 -20.00 -0.12 -5.92 16 28 H 0.10 2.07 7.91 -2.39 -0.02 2.05 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 2.70 5.45 -8.36 -0.05 2.65 16 31 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.12 0.09 8.07 -2.39 -0.02 0.07 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.20 0.86 6.64 -2.91 -0.02 0.84 16 35 H 0.42 5.26 6.71 -92.71 -0.62 4.64 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 41 H 0.02 0.95 1.81 -2.39 0.00 0.94 16 42 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.04 1.26 8.08 -2.39 -0.02 1.24 16 44 H 0.07 1.85 8.03 -2.38 -0.02 1.83 16 45 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -74.56 369.02 1.58 -72.98 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.34 Total: 6.06 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 7.05 Total: 16.64 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -7.81 Total: -125.14 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.31 Total: -17.15 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.69 Total: 46.60 kcal Total: -74.56 1.58 -72.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752036343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.118 kcal (2) G-P(sol) polarization free energy of solvation -74.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds