Wall clock time and date at job start Tue Mar 31 2020 16:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31879 * 119.61741 * 2 1 4 4 C 1.31857 * 121.72569 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.76155 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16347 * 0.02562 * 5 4 3 7 7 C 1.38181 * 119.61274 * 180.23600 * 2 1 3 8 8 C 1.50699 * 120.42260 * 0.02562 * 7 2 1 9 9 C 1.50694 * 109.47187 * 85.27256 * 8 7 2 10 10 O 1.21287 * 120.00146 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00098 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00209 * 179.97438 * 11 9 8 13 13 C 1.53928 * 113.73425 * 251.73102 * 12 11 9 14 14 N 1.47965 * 86.17922 * 221.91782 * 13 12 11 15 15 C 1.46903 * 110.99862 * 137.58024 * 14 13 12 16 16 C 1.50710 * 109.46955 * 70.64382 * 15 14 13 17 17 O 1.21289 * 119.99677 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99847 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99824 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00024 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00201 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46688 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46770 * 120.00140 * 23 21 19 26 26 H 1.48492 * 109.47116 * 240.00381 * 23 21 19 27 27 C 1.47962 * 90.76203 * 24.69165 * 14 13 12 28 28 H 1.09002 * 109.47409 * 89.99775 * 1 2 3 29 29 H 1.08999 * 109.47462 * 209.99888 * 1 2 3 30 30 H 1.08998 * 109.46992 * 330.00348 * 1 2 3 31 31 H 1.07997 * 119.62057 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.41893 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.78834 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47145 * 205.27600 * 8 7 2 35 35 H 1.08999 * 109.46740 * 325.27351 * 8 7 2 36 36 H 0.97003 * 120.00219 * 0.02562 * 11 9 8 37 37 H 1.08997 * 112.93421 * 23.43920 * 12 11 9 38 38 H 1.09001 * 113.76210 * 336.23748 * 13 12 11 39 39 H 1.09004 * 113.76117 * 107.60546 * 13 12 11 40 40 H 1.09000 * 109.47254 * 190.64071 * 15 14 13 41 41 H 1.08999 * 109.47459 * 310.64625 * 15 14 13 42 42 H 0.96998 * 119.99790 * 359.97438 * 18 16 15 43 43 H 0.96999 * 119.99883 * 179.97438 * 22 21 19 44 44 H 1.08995 * 113.75612 * 220.99077 * 27 14 13 45 45 H 1.09004 * 113.75694 * 89.62407 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0005 5 6 4.2266 0.0340 0.0016 6 6 3.5765 -1.1904 0.0016 7 6 2.1898 -1.2013 -0.0049 8 6 1.4371 -2.5069 -0.0109 9 6 1.0853 -2.8774 -1.4286 10 8 1.4139 -2.1529 -2.3441 11 7 0.4065 -4.0144 -1.6793 12 6 0.0640 -4.3744 -3.0575 13 6 -1.4337 -4.2293 -3.3818 14 7 -1.2997 -5.5121 -4.1068 15 6 -2.4453 -6.3913 -3.8374 16 6 -3.6732 -5.8378 -4.5137 17 8 -3.6008 -4.8123 -5.1572 18 7 -4.8516 -6.4825 -4.4035 19 6 -5.9684 -5.9794 -5.0192 20 1 -5.9040 -5.0661 -5.5922 21 6 -7.1832 -6.6442 -4.9060 22 7 -7.2617 -7.7551 -4.2084 23 14 -8.7051 -5.9582 -5.7443 24 1 -8.3533 -4.7063 -6.4614 25 1 -9.2270 -6.9540 -6.7145 26 1 -9.7445 -5.6694 -4.7239 27 6 -0.1369 -5.8855 -3.2714 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.9753 2.1528 0.0001 32 1 5.3056 0.0802 0.0016 33 1 4.1367 -2.1137 0.0020 34 1 2.0605 -3.2876 0.4247 35 1 0.5237 -2.4022 0.5746 36 1 0.1440 -4.5940 -0.9471 37 1 0.7209 -3.9107 -3.7933 38 1 -2.0802 -4.2853 -2.5059 39 1 -1.6632 -3.3817 -4.0277 40 1 -2.2364 -7.3890 -4.2236 41 1 -2.6164 -6.4462 -2.7623 42 1 -4.9093 -7.3029 -3.8892 43 1 -8.1098 -8.2191 -4.1291 44 1 0.6697 -6.3612 -3.8291 45 1 -0.4041 -6.4259 -2.3633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753387621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:38 Heat of formation + Delta-G solvation = 1.327962 kcal Electronic energy + Delta-G solvation = -27282.280319 eV Core-core repulsion = 23300.914310 eV Total energy + Delta-G solvation = -3981.366009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95034 -40.29998 -38.99289 -37.66128 -34.21979 -34.10266 -33.80327 -33.23636 -31.30717 -30.08973 -28.86081 -27.48427 -26.05418 -25.46309 -23.80176 -22.91210 -22.16985 -20.69434 -20.12401 -19.23939 -17.93133 -17.36135 -17.16989 -16.81362 -16.49091 -16.18122 -15.40255 -15.24937 -15.17051 -14.75715 -14.59502 -14.23697 -14.03653 -13.75914 -13.53560 -13.37992 -13.32147 -12.92672 -12.86505 -12.62230 -12.52466 -12.34551 -12.07951 -11.78847 -11.63166 -11.53416 -11.27439 -11.10461 -10.63230 -10.35689 -10.26942 -10.23943 -9.91102 -9.69245 -9.54182 -9.20094 -9.05807 -8.74065 -8.28097 -7.98984 -6.44330 -3.85052 0.81941 1.02797 2.40281 2.89748 3.14784 3.25682 3.33237 3.55328 3.85805 3.98578 4.03597 4.17928 4.24757 4.40850 4.49398 4.55508 4.65345 4.68721 4.83526 4.94467 4.94791 5.03443 5.17477 5.25879 5.31585 5.33076 5.35910 5.41100 5.47457 5.61925 5.62849 5.74699 5.82519 5.88941 5.91542 5.95099 6.14868 6.23991 6.32998 6.45152 6.55829 7.09501 7.27124 7.53319 7.76373 8.01346 8.03378 8.58532 9.15717 9.51096 10.02778 10.73464 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.001992 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.383991 B =14055.101615 C =14832.371652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.147 3.853 3 N -0.485 5.485 4 C 0.102 3.898 5 C -0.181 4.181 6 C -0.061 4.061 7 C -0.118 4.118 8 C -0.102 4.102 9 C 0.515 3.485 10 O -0.527 6.527 11 N -0.721 5.721 12 C 0.115 3.885 13 C 0.010 3.990 14 N -0.449 5.449 15 C 0.013 3.987 16 C 0.442 3.558 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.009 4.009 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.400 0.600 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.095 0.905 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.040 6.402 14.965 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.055 4.055 5 C -0.201 4.201 6 C -0.087 4.087 7 C -0.121 4.121 8 C -0.143 4.143 9 C 0.301 3.699 10 O -0.402 6.402 11 N -0.373 5.373 12 C 0.009 3.991 13 C -0.119 4.119 14 N -0.172 5.172 15 C -0.119 4.119 16 C 0.228 3.772 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.139 4.139 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.234 0.766 37 H 0.141 0.859 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.715 8.275 13.160 25.899 hybrid contribution -0.645 -1.629 1.134 2.087 sum 20.070 6.646 14.293 25.520 Atomic orbital electron populations 1.20821 0.88943 1.03296 1.03757 1.21087 0.96938 0.87704 0.93321 1.67532 1.10095 1.29079 1.12754 1.22733 0.89485 0.98480 0.94818 1.22065 1.01392 0.93382 1.03225 1.21418 0.93504 0.98586 0.95143 1.20040 0.94200 0.94847 1.02988 1.20671 1.02334 0.95865 0.95383 1.20481 0.77494 0.80982 0.90920 1.90758 1.52739 1.50300 1.46438 1.46080 1.57887 1.24129 1.09230 1.23140 0.97263 0.95148 0.83507 1.24302 0.94424 0.95676 0.97536 1.68388 1.02940 1.02842 1.43037 1.22454 0.92258 0.98282 0.98897 1.19671 0.84086 0.87070 0.86423 1.90538 1.85080 1.25566 1.44882 1.41868 1.07134 1.24503 1.46625 1.19752 0.85683 1.09016 1.28286 0.87859 1.25264 0.99356 0.95882 0.97491 1.69618 1.27139 1.16881 1.40731 0.85799 0.80721 0.79014 0.78827 1.19192 1.20723 1.20756 1.24438 0.96524 0.95670 0.97241 0.89756 0.90728 0.90318 0.82806 0.84819 0.84993 0.87741 0.87246 0.76555 0.85857 0.91277 0.88260 0.88989 0.92823 0.77526 0.91928 0.88620 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.76 36.01 0.35 -0.70 16 2 C 0.15 1.63 6.78 -82.59 -0.56 1.07 16 3 N -0.49 -5.78 10.27 -9.48 -0.10 -5.87 16 4 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 5 C -0.18 -1.45 10.11 -39.44 -0.40 -1.85 16 6 C -0.06 -0.51 9.84 -39.27 -0.39 -0.90 16 7 C -0.12 -1.13 4.39 -104.48 -0.46 -1.58 16 8 C -0.10 -0.71 5.35 -29.04 -0.16 -0.87 16 9 C 0.52 5.37 7.82 -10.99 -0.09 5.28 16 10 O -0.53 -8.00 15.63 5.55 0.09 -7.91 16 11 N -0.72 -6.46 5.36 -54.95 -0.29 -6.75 16 12 C 0.11 1.37 4.43 -69.63 -0.31 1.06 16 13 C 0.01 0.16 6.56 -2.77 -0.02 0.14 16 14 N -0.45 -7.23 5.95 -239.90 -1.43 -8.66 16 15 C 0.01 0.23 5.31 -4.97 -0.03 0.20 16 16 C 0.44 10.37 7.59 -10.98 -0.08 10.29 16 17 O -0.58 -15.71 15.13 5.55 0.08 -15.63 16 18 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 19 C -0.30 -8.28 9.68 -14.94 -0.14 -8.43 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C -0.01 -0.10 7.73 -2.77 -0.02 -0.12 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.53 6.03 -51.93 -0.31 0.22 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.10 0.43 8.06 -51.93 -0.42 0.02 16 35 H 0.11 0.56 6.16 -51.93 -0.32 0.24 16 36 H 0.40 2.32 8.73 -40.82 -0.36 1.96 16 37 H 0.12 1.70 7.46 -51.93 -0.39 1.31 16 38 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 39 H 0.10 1.81 8.09 -51.93 -0.42 1.39 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 42 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.63 7.77 -51.93 -0.40 0.23 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -36.28 381.48 -9.06 -45.34 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.21 Total: 10.75 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.59 Total: 4.84 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -1.15 Total: -59.14 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.54 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.28 -9.06 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753387621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.669 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds