Wall clock time and date at job start Tue Mar 31 2020 16:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31879 * 119.61741 * 2 1 4 4 C 1.31857 * 121.72569 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.76155 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16347 * 0.02562 * 5 4 3 7 7 C 1.38181 * 119.61274 * 180.23600 * 2 1 3 8 8 C 1.50699 * 120.42260 * 0.02562 * 7 2 1 9 9 C 1.50694 * 109.47187 * 85.27256 * 8 7 2 10 10 O 1.21287 * 120.00146 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00098 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00209 * 179.97438 * 11 9 8 13 13 C 1.53928 * 113.73425 * 251.73102 * 12 11 9 14 14 N 1.47965 * 86.17922 * 221.91782 * 13 12 11 15 15 C 1.46903 * 110.99862 * 137.58024 * 14 13 12 16 16 C 1.50710 * 109.46955 * 70.64382 * 15 14 13 17 17 O 1.21289 * 119.99677 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99847 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99824 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00024 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00201 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46688 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46770 * 120.00140 * 23 21 19 26 26 H 1.48492 * 109.47116 * 240.00381 * 23 21 19 27 27 C 1.47962 * 90.76203 * 24.69165 * 14 13 12 28 28 H 1.09002 * 109.47409 * 89.99775 * 1 2 3 29 29 H 1.08999 * 109.47462 * 209.99888 * 1 2 3 30 30 H 1.08998 * 109.46992 * 330.00348 * 1 2 3 31 31 H 1.07997 * 119.62057 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.41893 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.78834 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47145 * 205.27600 * 8 7 2 35 35 H 1.08999 * 109.46740 * 325.27351 * 8 7 2 36 36 H 0.97003 * 120.00219 * 0.02562 * 11 9 8 37 37 H 1.08997 * 112.93421 * 23.43920 * 12 11 9 38 38 H 1.09001 * 113.76210 * 336.23748 * 13 12 11 39 39 H 1.09004 * 113.76117 * 107.60546 * 13 12 11 40 40 H 1.09000 * 109.47254 * 190.64071 * 15 14 13 41 41 H 1.08999 * 109.47459 * 310.64625 * 15 14 13 42 42 H 0.96998 * 119.99790 * 359.97438 * 18 16 15 43 43 H 0.96999 * 119.99883 * 179.97438 * 22 21 19 44 44 H 1.08995 * 113.75612 * 220.99077 * 27 14 13 45 45 H 1.09004 * 113.75694 * 89.62407 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0005 5 6 4.2266 0.0340 0.0016 6 6 3.5765 -1.1904 0.0016 7 6 2.1898 -1.2013 -0.0049 8 6 1.4371 -2.5069 -0.0109 9 6 1.0853 -2.8774 -1.4286 10 8 1.4139 -2.1529 -2.3441 11 7 0.4065 -4.0144 -1.6793 12 6 0.0640 -4.3744 -3.0575 13 6 -1.4337 -4.2293 -3.3818 14 7 -1.2997 -5.5121 -4.1068 15 6 -2.4453 -6.3913 -3.8374 16 6 -3.6732 -5.8378 -4.5137 17 8 -3.6008 -4.8123 -5.1572 18 7 -4.8516 -6.4825 -4.4035 19 6 -5.9684 -5.9794 -5.0192 20 1 -5.9040 -5.0661 -5.5922 21 6 -7.1832 -6.6442 -4.9060 22 7 -7.2617 -7.7551 -4.2084 23 14 -8.7051 -5.9582 -5.7443 24 1 -8.3533 -4.7063 -6.4614 25 1 -9.2270 -6.9540 -6.7145 26 1 -9.7445 -5.6694 -4.7239 27 6 -0.1369 -5.8855 -3.2714 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.9753 2.1528 0.0001 32 1 5.3056 0.0802 0.0016 33 1 4.1367 -2.1137 0.0020 34 1 2.0605 -3.2876 0.4247 35 1 0.5237 -2.4022 0.5746 36 1 0.1440 -4.5940 -0.9471 37 1 0.7209 -3.9107 -3.7933 38 1 -2.0802 -4.2853 -2.5059 39 1 -1.6632 -3.3817 -4.0277 40 1 -2.2364 -7.3890 -4.2236 41 1 -2.6164 -6.4462 -2.7623 42 1 -4.9093 -7.3029 -3.8892 43 1 -8.1098 -8.2191 -4.1291 44 1 0.6697 -6.3612 -3.8291 45 1 -0.4041 -6.4259 -2.3633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753387621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:37 Heat of formation + Delta-G solvation = -28.694868 kcal Electronic energy + Delta-G solvation = -27283.582206 eV Core-core repulsion = 23300.914310 eV Total energy + Delta-G solvation = -3982.667896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77807 -41.26059 -40.13124 -39.28026 -35.98863 -35.03789 -34.77030 -33.89143 -33.30799 -31.30056 -29.66748 -28.21571 -27.23869 -27.05118 -25.13540 -23.70994 -22.91517 -21.53044 -21.24840 -20.87749 -19.90540 -18.16031 -17.93204 -17.84977 -17.64119 -17.24059 -16.62523 -16.57742 -16.17958 -16.00075 -15.65313 -15.58820 -15.44593 -14.89976 -14.79818 -14.22921 -14.09624 -13.98211 -13.68790 -13.64283 -13.53367 -13.46763 -13.26979 -13.14241 -12.94400 -12.86796 -12.44142 -12.35648 -12.20027 -12.14483 -11.79087 -11.52172 -11.13205 -10.62403 -10.38928 -10.35450 -10.11640 -10.02457 -9.77641 -9.67808 -8.48507 -5.96791 0.14993 0.37483 1.34814 1.40468 1.54252 1.61405 2.03711 2.09965 2.28645 2.81382 2.92355 3.18181 3.23040 3.40894 3.56412 3.62090 3.80851 3.91222 3.93557 3.99750 4.12795 4.14873 4.28450 4.38812 4.41846 4.44692 4.54612 4.55199 4.66635 4.69000 4.69960 4.73383 4.82019 4.84203 5.01182 5.14480 5.25070 5.31497 5.35546 5.39988 5.45773 5.82784 5.86920 6.05625 6.56614 6.59245 7.07645 7.11946 7.28019 7.54877 8.11583 8.68969 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.001992 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.383991 B =14055.101615 C =14832.371652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.117 3.883 3 N -0.522 5.522 4 C 0.082 3.918 5 C -0.179 4.179 6 C -0.069 4.069 7 C -0.129 4.129 8 C -0.093 4.093 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.704 5.704 12 C 0.131 3.869 13 C 0.005 3.995 14 N -0.484 5.484 15 C 0.027 3.973 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.277 1.277 25 H -0.270 1.270 26 H -0.269 1.269 27 C 0.011 3.989 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.421 0.579 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.112 0.888 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.312 4.222 17.119 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.020 4.020 3 N -0.232 5.232 4 C -0.074 4.074 5 C -0.199 4.199 6 C -0.095 4.095 7 C -0.131 4.131 8 C -0.133 4.133 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.357 5.357 12 C 0.024 3.976 13 C -0.126 4.126 14 N -0.207 5.207 15 C -0.104 4.104 16 C 0.224 3.776 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.093 0.907 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.202 1.202 25 H -0.195 1.195 26 H -0.194 1.194 27 C -0.118 4.118 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.191 0.809 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.259 0.741 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.130 0.870 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.988 6.038 15.371 27.499 hybrid contribution -0.962 -0.904 0.448 1.394 sum 21.026 5.134 15.819 26.809 Atomic orbital electron populations 1.20811 0.88751 1.04453 1.02538 1.21378 0.97530 0.88466 0.94639 1.67490 1.11540 1.30114 1.14027 1.23192 0.89078 1.00193 0.94955 1.22437 1.02884 0.92845 1.01689 1.21868 0.93423 0.99895 0.94275 1.20329 0.95033 0.95242 1.02489 1.20737 1.03826 0.95705 0.93027 1.21116 0.76465 0.80291 0.91855 1.90750 1.54945 1.51943 1.48404 1.45868 1.57125 1.24150 1.08587 1.22674 0.94186 0.96027 0.84699 1.24235 0.97222 0.94284 0.96831 1.68342 1.03997 1.03065 1.45342 1.22358 0.89444 0.98704 0.99941 1.20870 0.85334 0.86076 0.85278 1.90514 1.86036 1.27628 1.46704 1.41923 1.07284 1.24897 1.46937 1.19646 0.87605 1.09071 1.29911 0.90737 1.25992 1.01434 0.96023 0.97695 1.69662 1.28171 1.17224 1.40828 0.84909 0.77409 0.78093 0.78155 1.20168 1.19542 1.19396 1.24489 0.94420 0.94884 0.97967 0.92071 0.88319 0.90501 0.80929 0.81881 0.82216 0.83812 0.85057 0.74104 0.88160 0.90622 0.92788 0.86835 0.89559 0.76852 0.91255 0.87015 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.76 71.24 0.70 -1.42 16 2 C 0.12 2.61 6.78 42.54 0.29 2.90 16 3 N -0.52 -12.77 10.27 -183.89 -1.89 -14.66 16 4 C 0.08 1.53 11.18 84.69 0.95 2.47 16 5 C -0.18 -2.58 10.11 22.36 0.23 -2.35 16 6 C -0.07 -1.01 9.84 22.47 0.22 -0.79 16 7 C -0.13 -2.25 4.39 -19.77 -0.09 -2.34 16 8 C -0.09 -1.02 5.35 29.10 0.16 -0.86 16 9 C 0.51 9.85 7.82 87.66 0.69 10.54 16 10 O -0.58 -17.79 15.63 -3.05 -0.05 -17.84 16 11 N -0.70 -10.77 5.36 -446.16 -2.39 -13.16 16 12 C 0.13 2.95 4.43 46.56 0.21 3.15 16 13 C 0.00 0.14 6.56 86.40 0.57 0.71 16 14 N -0.48 -15.01 5.95 -912.90 -5.43 -20.44 16 15 C 0.03 0.88 5.31 85.56 0.45 1.33 16 16 C 0.44 20.74 7.59 87.66 0.67 21.40 16 17 O -0.62 -35.32 15.13 -3.06 -0.05 -35.37 16 18 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 19 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 20 H 0.07 4.60 7.16 -2.91 -0.02 4.58 16 21 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 22 N -0.92 -48.91 13.05 21.66 0.28 -48.62 16 23 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 C 0.01 0.21 7.73 86.41 0.67 0.87 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 1.30 6.03 -2.39 -0.01 1.29 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 33 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 34 H 0.14 0.47 8.06 -2.39 -0.02 0.45 16 35 H 0.13 0.87 6.16 -2.39 -0.01 0.85 16 36 H 0.42 3.04 8.73 -92.71 -0.81 2.23 16 37 H 0.10 2.80 7.46 -2.39 -0.02 2.78 16 38 H 0.08 2.18 7.78 -2.39 -0.02 2.16 16 39 H 0.05 2.13 8.09 -2.38 -0.02 2.11 16 40 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.09 2.24 7.69 -2.39 -0.02 2.22 16 42 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 43 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 44 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.11 1.29 7.77 -2.38 -0.02 1.27 16 Total: -1.00 -84.65 381.48 -2.65 -87.30 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.50 Total: 31.10 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.97 Total: 17.30 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -11.05 Total: -127.63 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.09 Total: -53.21 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -84.65 -2.65 -87.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753387621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.604 kcal (2) G-P(sol) polarization free energy of solvation -84.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds