Wall clock time and date at job start Tue Mar 31 2020 17:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38630 * 120.46928 * 2 1 4 4 C 1.38583 * 118.48606 * 179.76074 * 3 2 1 5 5 C 1.38603 * 119.35153 * 0.53585 * 4 3 2 6 6 N 1.31497 * 120.90314 * 359.70331 * 5 4 3 7 7 C 1.32746 * 121.64209 * 0.02562 * 6 5 4 8 8 C 1.48159 * 119.72435 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00489 * 179.66280 * 8 7 6 10 10 N 1.34779 * 120.00191 * 359.65893 * 8 7 6 11 11 C 1.46492 * 120.00356 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47212 * 180.02562 * 11 10 8 13 13 C 1.30999 * 119.99941 * 125.87957 * 12 11 10 14 14 C 1.50697 * 120.00184 * 8.13839 * 13 12 11 15 15 N 1.46900 * 109.47316 * 125.87750 * 14 13 12 16 16 C 1.46908 * 110.99911 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47140 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99895 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00228 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99943 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00433 * 0.02562 * 20 19 17 22 22 C 1.38960 * 119.99933 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99658 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46809 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47001 * 120.00002 * 24 22 20 27 27 H 1.48497 * 109.46702 * 239.99910 * 24 22 20 28 28 H 1.09003 * 109.47038 * 265.31642 * 1 2 3 29 29 H 1.09004 * 109.47242 * 145.31700 * 1 2 3 30 30 H 1.08997 * 109.47156 * 25.31508 * 1 2 3 31 31 H 1.07997 * 120.75251 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.32100 * 180.25683 * 4 3 2 33 33 H 1.08000 * 119.54840 * 179.72454 * 5 4 3 34 34 H 0.97003 * 119.99790 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47063 * 300.00148 * 11 10 8 36 36 H 1.08996 * 109.47432 * 59.99784 * 11 10 8 37 37 H 1.07997 * 119.99809 * 305.87654 * 12 11 10 38 38 H 1.08002 * 119.99864 * 188.12887 * 13 12 11 39 39 H 1.09003 * 109.47014 * 245.88177 * 14 13 12 40 40 H 1.09006 * 109.47522 * 5.87456 * 14 13 12 41 41 H 1.00901 * 110.99984 * 56.04633 * 15 14 13 42 42 H 1.09000 * 109.46730 * 299.99703 * 16 15 14 43 43 H 1.08998 * 109.47383 * 59.99550 * 16 15 14 44 44 H 0.97001 * 119.99901 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99429 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1469 0.0051 5 6 4.2322 -0.0840 -0.0013 6 7 3.5406 -1.2024 -0.0063 7 6 2.2132 -1.2004 -0.0059 8 6 1.4767 -2.4860 -0.0122 9 8 0.2615 -2.4902 -0.0056 10 7 2.1544 -3.6509 -0.0252 11 6 1.4262 -4.9220 -0.0320 12 6 2.4093 -6.0641 -0.0458 13 6 2.3370 -7.0017 0.8663 14 6 1.1671 -7.0410 1.8154 15 7 0.5384 -8.3676 1.7631 16 6 -0.6091 -8.4429 2.6773 17 6 -1.2263 -9.8153 2.5969 18 8 -0.7568 -10.6486 1.8509 19 7 -2.2999 -10.1168 3.3537 20 6 -2.8617 -11.3651 3.2801 21 1 -2.4438 -12.1071 2.6159 22 6 -3.9691 -11.6758 4.0600 23 7 -4.4780 -10.7728 4.8677 24 14 -4.7342 -13.3770 3.9602 25 1 -3.9801 -14.2023 2.9827 26 1 -4.6831 -14.0219 5.2969 27 1 -6.1478 -13.2589 3.5212 28 1 -0.3633 -0.0839 1.0243 29 1 -0.3634 -0.8451 -0.5848 30 1 -0.3633 0.9289 -0.4394 31 1 1.6900 2.1414 0.0004 32 1 4.1721 2.0598 0.0094 33 1 5.3114 -0.1250 -0.0019 34 1 3.1244 -3.6476 -0.0308 35 1 0.8042 -4.9892 0.8607 36 1 0.7952 -4.9746 -0.9192 37 1 3.1734 -6.1097 -0.8076 38 1 3.1157 -7.7465 0.9380 39 1 1.5150 -6.8434 2.8293 40 1 0.4393 -6.2825 1.5268 41 1 1.2095 -9.0939 1.9640 42 1 -0.2738 -8.2549 3.6973 43 1 -1.3489 -7.6941 2.3943 44 1 -2.6752 -9.4505 3.9505 45 1 -5.2511 -10.9896 5.4119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754106976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:07 Heat of formation + Delta-G solvation = -6.845135 kcal Electronic energy + Delta-G solvation = -26214.019799 eV Core-core repulsion = 22232.299378 eV Total energy + Delta-G solvation = -3981.720421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14648 -39.30248 -38.31859 -37.03265 -35.21967 -34.06743 -33.76038 -32.90214 -32.28567 -31.18076 -28.42158 -27.61285 -26.28023 -24.87687 -24.40191 -23.12717 -22.60015 -21.11767 -19.62020 -19.08681 -18.06859 -17.75126 -17.22244 -16.51088 -16.08994 -15.95095 -15.84128 -15.41949 -15.22026 -14.93340 -14.55947 -14.30154 -14.15732 -13.75767 -13.64582 -13.63358 -13.55944 -13.06733 -12.92636 -12.71060 -12.62297 -12.44720 -12.37284 -11.82791 -11.51463 -11.47092 -11.03751 -10.80644 -10.43275 -10.32214 -10.28824 -10.20136 -9.83458 -9.57941 -9.49784 -9.44299 -9.04767 -8.43428 -8.01648 -7.93134 -6.39335 -3.80047 0.21116 0.71612 1.83366 2.41691 2.97966 3.18468 3.28847 3.36385 3.42477 3.75541 3.93553 4.15797 4.28681 4.32900 4.45199 4.45494 4.48447 4.61120 4.87089 4.90077 5.08541 5.13660 5.20571 5.26473 5.28414 5.36354 5.43643 5.53178 5.57078 5.64494 5.73023 5.76125 5.83353 5.89854 6.00908 6.10930 6.28199 6.30352 6.40285 6.62756 7.09961 7.20214 7.39489 7.57879 7.66412 7.92095 8.09071 8.63849 9.20407 9.56963 10.08380 10.78520 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.001619 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.462950 B =17286.798721 C =18177.731481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.088 4.088 4 C -0.145 4.145 5 C 0.088 3.912 6 N -0.456 5.456 7 C 0.071 3.929 8 C 0.568 3.432 9 O -0.525 6.525 10 N -0.705 5.705 11 C 0.138 3.862 12 C -0.182 4.182 13 C -0.110 4.110 14 C 0.069 3.931 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.410 0.590 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.037 0.963 40 H 0.086 0.914 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.570 26.714 -7.770 32.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.114 4.114 4 C -0.165 4.165 5 C -0.072 4.072 6 N -0.167 5.167 7 C -0.067 4.067 8 C 0.353 3.647 9 O -0.401 6.401 10 N -0.356 5.356 11 C 0.016 3.984 12 C -0.201 4.201 13 C -0.130 4.130 14 C -0.060 4.060 15 N -0.295 5.295 16 C -0.083 4.083 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.246 0.754 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.169 0.831 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.848 25.402 -8.685 31.695 hybrid contribution 0.023 0.480 1.270 1.358 sum 16.871 25.883 -7.415 31.773 Atomic orbital electron populations 1.21226 0.88821 1.04238 1.04175 1.21000 0.98606 0.92311 0.95317 1.21601 0.94190 0.98229 0.97366 1.22395 0.95311 0.99914 0.98911 1.22771 1.00487 0.87300 0.96606 1.67517 1.07082 1.32099 1.09966 1.20982 0.89851 0.93620 1.02250 1.17870 0.86668 0.83082 0.77049 1.90735 1.12804 1.86576 1.50026 1.45859 1.11253 1.04945 1.73511 1.20582 0.93818 0.80402 1.03584 1.22649 1.01300 0.96875 0.99291 1.22839 0.97113 0.98042 0.94977 1.21292 0.94676 0.93159 0.96827 1.60095 1.10961 1.03235 1.55227 1.21698 0.94202 0.98030 0.94363 1.19788 0.83826 0.88994 0.84711 1.90522 1.64231 1.50152 1.41816 1.41867 1.26265 1.14211 1.37721 1.19765 1.10146 0.89981 1.22962 0.87844 1.25272 0.96991 0.99644 0.96098 1.69625 1.24293 1.34328 1.26063 0.85790 0.78761 0.81661 0.78073 1.19211 1.20798 1.20748 0.90285 0.87308 0.92056 0.84062 0.84174 0.82007 0.75372 0.89703 0.90381 0.86336 0.86513 0.94499 0.89630 0.83109 0.93806 0.89467 0.77438 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.93 36.01 0.32 -0.76 16 2 C -0.07 -0.60 5.93 -104.09 -0.62 -1.22 16 3 C -0.09 -0.53 9.84 -39.31 -0.39 -0.92 16 4 C -0.15 -0.72 10.11 -39.32 -0.40 -1.11 16 5 C 0.09 0.54 11.18 -17.56 -0.20 0.35 16 6 N -0.46 -4.03 9.54 -9.80 -0.09 -4.12 16 7 C 0.07 0.71 6.75 -83.01 -0.56 0.15 16 8 C 0.57 6.57 7.78 -12.19 -0.09 6.48 16 9 O -0.52 -7.26 13.17 5.35 0.07 -7.19 16 10 N -0.70 -7.03 5.54 -62.33 -0.35 -7.38 16 11 C 0.14 1.46 5.78 -5.20 -0.03 1.43 16 12 C -0.18 -1.74 9.62 -36.02 -0.35 -2.09 16 13 C -0.11 -1.18 9.77 -36.03 -0.35 -1.53 16 14 C 0.07 0.87 5.80 -4.98 -0.03 0.84 16 15 N -0.66 -10.97 6.11 -116.33 -0.71 -11.68 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 17 C 0.44 10.66 7.82 -10.99 -0.09 10.57 16 18 O -0.58 -16.14 15.78 5.55 0.09 -16.05 16 19 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 20 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 21 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 22 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 23 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.11 1.16 5.51 -51.93 -0.29 0.87 16 30 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 31 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.14 0.27 8.06 -52.48 -0.42 -0.16 16 33 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.41 3.49 7.79 -40.82 -0.32 3.17 16 35 H 0.09 0.98 5.26 -51.93 -0.27 0.71 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 1.08 5.26 -51.93 -0.27 0.81 16 41 H 0.35 5.85 8.42 -39.29 -0.33 5.52 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -34.13 384.69 -8.56 -42.69 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -5.96 Total: 15.50 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -3.05 Total: 4.93 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.48 Total: -61.96 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.16 Total: -23.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.13 -8.56 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754106976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.848 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds