Wall clock time and date at job start Tue Mar 31 2020 17:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38630 * 120.46928 * 2 1 4 4 C 1.38583 * 118.48606 * 179.76074 * 3 2 1 5 5 C 1.38603 * 119.35153 * 0.53585 * 4 3 2 6 6 N 1.31497 * 120.90314 * 359.70331 * 5 4 3 7 7 C 1.32746 * 121.64209 * 0.02562 * 6 5 4 8 8 C 1.48159 * 119.72435 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00489 * 179.66280 * 8 7 6 10 10 N 1.34779 * 120.00191 * 359.65893 * 8 7 6 11 11 C 1.46492 * 120.00356 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47212 * 180.02562 * 11 10 8 13 13 C 1.30999 * 119.99941 * 125.87957 * 12 11 10 14 14 C 1.50697 * 120.00184 * 8.13839 * 13 12 11 15 15 N 1.46900 * 109.47316 * 125.87750 * 14 13 12 16 16 C 1.46908 * 110.99911 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47140 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99895 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00228 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99943 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00433 * 0.02562 * 20 19 17 22 22 C 1.38960 * 119.99933 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99658 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46809 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47001 * 120.00002 * 24 22 20 27 27 H 1.48497 * 109.46702 * 239.99910 * 24 22 20 28 28 H 1.09003 * 109.47038 * 265.31642 * 1 2 3 29 29 H 1.09004 * 109.47242 * 145.31700 * 1 2 3 30 30 H 1.08997 * 109.47156 * 25.31508 * 1 2 3 31 31 H 1.07997 * 120.75251 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.32100 * 180.25683 * 4 3 2 33 33 H 1.08000 * 119.54840 * 179.72454 * 5 4 3 34 34 H 0.97003 * 119.99790 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47063 * 300.00148 * 11 10 8 36 36 H 1.08996 * 109.47432 * 59.99784 * 11 10 8 37 37 H 1.07997 * 119.99809 * 305.87654 * 12 11 10 38 38 H 1.08002 * 119.99864 * 188.12887 * 13 12 11 39 39 H 1.09003 * 109.47014 * 245.88177 * 14 13 12 40 40 H 1.09006 * 109.47522 * 5.87456 * 14 13 12 41 41 H 1.00901 * 110.99984 * 56.04633 * 15 14 13 42 42 H 1.09000 * 109.46730 * 299.99703 * 16 15 14 43 43 H 1.08998 * 109.47383 * 59.99550 * 16 15 14 44 44 H 0.97001 * 119.99901 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99429 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1469 0.0051 5 6 4.2322 -0.0840 -0.0013 6 7 3.5406 -1.2024 -0.0063 7 6 2.2132 -1.2004 -0.0059 8 6 1.4767 -2.4860 -0.0122 9 8 0.2615 -2.4902 -0.0056 10 7 2.1544 -3.6509 -0.0252 11 6 1.4262 -4.9220 -0.0320 12 6 2.4093 -6.0641 -0.0458 13 6 2.3370 -7.0017 0.8663 14 6 1.1671 -7.0410 1.8154 15 7 0.5384 -8.3676 1.7631 16 6 -0.6091 -8.4429 2.6773 17 6 -1.2263 -9.8153 2.5969 18 8 -0.7568 -10.6486 1.8509 19 7 -2.2999 -10.1168 3.3537 20 6 -2.8617 -11.3651 3.2801 21 1 -2.4438 -12.1071 2.6159 22 6 -3.9691 -11.6758 4.0600 23 7 -4.4780 -10.7728 4.8677 24 14 -4.7342 -13.3770 3.9602 25 1 -3.9801 -14.2023 2.9827 26 1 -4.6831 -14.0219 5.2969 27 1 -6.1478 -13.2589 3.5212 28 1 -0.3633 -0.0839 1.0243 29 1 -0.3634 -0.8451 -0.5848 30 1 -0.3633 0.9289 -0.4394 31 1 1.6900 2.1414 0.0004 32 1 4.1721 2.0598 0.0094 33 1 5.3114 -0.1250 -0.0019 34 1 3.1244 -3.6476 -0.0308 35 1 0.8042 -4.9892 0.8607 36 1 0.7952 -4.9746 -0.9192 37 1 3.1734 -6.1097 -0.8076 38 1 3.1157 -7.7465 0.9380 39 1 1.5150 -6.8434 2.8293 40 1 0.4393 -6.2825 1.5268 41 1 1.2095 -9.0939 1.9640 42 1 -0.2738 -8.2549 3.6973 43 1 -1.3489 -7.6941 2.3943 44 1 -2.6752 -9.4505 3.9505 45 1 -5.2511 -10.9896 5.4119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754106976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:06 Heat of formation + Delta-G solvation = -33.216048 kcal Electronic energy + Delta-G solvation = -26215.163328 eV Core-core repulsion = 22232.299378 eV Total energy + Delta-G solvation = -3982.863949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78152 -40.21467 -40.01039 -38.10411 -36.37447 -35.82767 -34.62556 -33.81136 -33.26171 -32.88095 -29.49545 -28.55143 -27.33432 -26.38318 -25.13468 -24.49042 -23.13675 -21.89759 -21.20904 -20.23457 -19.87130 -18.79398 -17.97728 -17.63222 -17.22749 -16.87688 -16.74263 -16.44930 -16.42196 -16.06763 -15.98340 -15.60737 -15.28278 -15.07680 -14.86206 -14.45235 -14.31785 -14.05167 -14.01306 -13.68966 -13.53784 -13.46435 -13.26181 -13.20239 -12.97379 -12.94758 -12.74331 -12.41376 -12.11317 -11.70545 -11.52510 -11.11694 -10.77699 -10.54360 -10.38374 -10.37310 -10.13947 -10.02874 -9.83715 -9.28598 -8.47741 -5.96833 -0.36191 0.23377 0.99547 1.36466 1.41678 1.56405 1.69064 2.03007 2.21049 2.29579 2.83546 2.99936 3.17306 3.19328 3.59541 3.69496 3.77416 3.85705 3.96964 4.03527 4.05289 4.22609 4.28949 4.42447 4.45694 4.49463 4.53411 4.56052 4.65581 4.74838 4.77370 4.78204 4.94368 5.10283 5.14659 5.25411 5.40210 5.45986 5.55685 5.69430 5.77519 5.86837 6.06733 6.37275 6.38155 6.58426 6.79542 7.11114 7.11997 7.54233 8.09263 8.69947 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.001619 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.462950 B =17286.798721 C =18177.731481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 C -0.089 4.089 4 C -0.130 4.130 5 C 0.081 3.919 6 N -0.473 5.473 7 C 0.042 3.958 8 C 0.560 3.440 9 O -0.558 6.558 10 N -0.696 5.696 11 C 0.139 3.861 12 C -0.165 4.165 13 C -0.122 4.122 14 C 0.071 3.929 15 N -0.677 5.677 16 C 0.063 3.937 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.996 3.004 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.271 1.271 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.193 0.807 34 H 0.418 0.582 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.347 0.653 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.166 28.731 -7.689 35.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.089 4.089 3 C -0.114 4.114 4 C -0.150 4.150 5 C -0.079 4.079 6 N -0.185 5.185 7 C -0.094 4.094 8 C 0.347 3.653 9 O -0.438 6.438 10 N -0.347 5.347 11 C 0.016 3.984 12 C -0.184 4.184 13 C -0.142 4.142 14 C -0.056 4.056 15 N -0.310 5.310 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.819 3.181 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.187 0.813 32 H 0.197 0.803 33 H 0.210 0.790 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.166 0.834 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.462 27.444 -8.591 34.174 hybrid contribution -0.375 -0.004 1.211 1.267 sum 18.087 27.440 -7.380 33.683 Atomic orbital electron populations 1.21109 0.89361 1.04202 1.03325 1.21146 0.98563 0.93087 0.96144 1.21967 0.94945 0.98181 0.96341 1.22844 0.95024 1.00931 0.96177 1.23420 1.01887 0.87139 0.95448 1.67477 1.06499 1.33726 1.10751 1.20804 0.90626 0.93092 1.04918 1.18304 0.86529 0.84088 0.76400 1.90717 1.14207 1.87205 1.51650 1.45782 1.11542 1.04443 1.72971 1.20501 0.94109 0.81245 1.02534 1.22742 1.00942 0.95732 0.99003 1.22835 0.97048 0.99126 0.95167 1.21314 0.95252 0.90870 0.98211 1.60084 1.10895 1.05074 1.54953 1.21549 0.94997 0.94043 0.96307 1.20824 0.82802 0.90828 0.83018 1.90487 1.65129 1.52133 1.43139 1.41938 1.26965 1.13722 1.38374 1.19734 1.11694 0.90937 1.24112 0.90231 1.26082 0.96719 1.03371 0.95175 1.69685 1.24546 1.35845 1.26080 0.84834 0.77925 0.76999 0.78340 1.19738 1.19464 1.19644 0.91140 0.89988 0.89796 0.81342 0.80334 0.79033 0.74451 0.90854 0.91462 0.84139 0.85175 0.93267 0.89860 0.83398 0.91367 0.88126 0.76977 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 8.93 71.24 0.64 -1.51 16 2 C -0.09 -1.46 5.93 -19.52 -0.12 -1.57 16 3 C -0.09 -0.85 9.84 22.45 0.22 -0.63 16 4 C -0.13 -0.82 10.11 22.44 0.23 -0.59 16 5 C 0.08 0.78 11.18 84.83 0.95 1.73 16 6 N -0.47 -7.88 9.54 -184.91 -1.76 -9.64 16 7 C 0.04 0.85 6.75 41.89 0.28 1.13 16 8 C 0.56 13.61 7.78 86.88 0.68 14.28 16 9 O -0.56 -16.61 13.17 -3.77 -0.05 -16.66 16 10 N -0.70 -14.15 5.54 -469.41 -2.60 -16.75 16 11 C 0.14 2.97 5.78 85.64 0.50 3.46 16 12 C -0.17 -2.98 9.62 25.65 0.25 -2.74 16 13 C -0.12 -2.48 9.77 25.65 0.25 -2.23 16 14 C 0.07 1.75 5.80 85.56 0.50 2.24 16 15 N -0.68 -22.17 6.11 -521.97 -3.19 -25.36 16 16 C 0.06 2.28 6.17 85.55 0.53 2.80 16 17 C 0.44 21.53 7.82 87.66 0.69 22.21 16 18 O -0.62 -35.40 15.78 -3.07 -0.05 -35.45 16 19 N -0.57 -30.26 5.29 -306.99 -1.62 -31.88 16 20 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 21 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.92 -50.60 13.05 21.67 0.28 -50.32 16 24 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.90 5.51 -2.38 -0.01 1.89 16 30 H 0.08 0.99 8.07 -2.39 -0.02 0.97 16 31 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 32 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 33 H 0.19 0.53 8.06 -2.91 -0.02 0.50 16 34 H 0.42 6.99 7.79 -92.71 -0.72 6.27 16 35 H 0.07 1.75 5.26 -2.39 -0.01 1.74 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 2.09 5.26 -2.38 -0.01 2.08 16 41 H 0.35 11.56 8.42 -89.69 -0.76 10.81 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 45 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -76.43 384.69 -1.26 -77.69 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -1.15 Total: 43.05 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 6.86 Total: 19.64 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -8.90 Total: -133.95 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.10 Total: -52.12 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -76.43 -1.26 -77.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754106976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.477 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds