Wall clock time and date at job start Tue Mar 31 2020 17:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36027 * 120.33686 * 2 1 4 4 C 1.40466 * 119.69338 * 179.97438 * 3 2 1 5 5 C 1.34946 * 120.30310 * 359.97438 * 4 3 2 6 6 N 1.36492 * 120.60813 * 359.97438 * 5 4 3 7 7 C 1.36839 * 132.56725 * 180.02562 * 6 5 4 8 8 C 1.35110 * 107.17263 * 179.35207 * 7 6 5 9 9 C 1.50708 * 125.68352 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46671 * 125.58425 * 9 8 7 11 11 O 1.21280 * 120.00214 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99672 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99799 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46917 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.46899 * 295.00384 * 14 13 12 16 16 C 1.52999 * 109.46844 * 175.00432 * 14 13 12 17 17 O 1.42909 * 109.47114 * 305.00041 * 16 14 13 18 18 N 1.46500 * 109.46602 * 55.00381 * 14 13 12 19 19 C 1.36939 * 119.99635 * 204.99561 * 18 14 13 20 20 H 1.08002 * 120.00109 * 0.02562 * 19 18 14 21 21 C 1.38810 * 119.99897 * 180.02562 * 19 18 14 22 22 N 1.31618 * 120.00225 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00017 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47069 * 89.99686 * 23 21 19 25 25 H 1.48499 * 109.47514 * 209.99910 * 23 21 19 26 26 H 1.48505 * 109.47336 * 330.00125 * 23 21 19 27 27 N 1.33509 * 108.62906 * 0.56131 * 8 7 6 28 28 C 1.32563 * 109.15839 * 359.49816 * 27 8 7 29 29 H 1.09002 * 109.47152 * 90.00165 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00265 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00246 * 1 2 3 32 32 H 1.08006 * 120.15121 * 359.95362 * 3 2 1 33 33 H 1.08003 * 119.84997 * 179.97438 * 4 3 2 34 34 H 1.08004 * 119.70084 * 180.02562 * 5 4 3 35 35 H 1.08000 * 126.41210 * 359.97438 * 7 6 5 36 36 H 1.08998 * 109.47388 * 245.58835 * 9 8 7 37 37 H 1.09004 * 109.46935 * 5.58637 * 9 8 7 38 38 H 0.96998 * 119.99569 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47200 * 300.00291 * 13 12 10 40 40 H 1.08998 * 109.46628 * 60.00084 * 13 12 10 41 41 H 1.08996 * 109.47655 * 64.99922 * 16 14 13 42 42 H 1.09000 * 109.46746 * 185.00607 * 16 14 13 43 43 H 0.96696 * 113.99962 * 180.02562 * 17 16 14 44 44 H 0.96994 * 120.00344 * 25.00435 * 18 14 13 45 45 H 0.97003 * 120.00131 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1740 0.0000 4 6 3.5987 1.1582 0.0005 5 6 4.2664 -0.0144 0.0016 6 7 3.5895 -1.1996 0.0027 7 6 4.0055 -2.5033 0.0043 8 6 2.8971 -3.2757 0.0193 9 6 2.8759 -4.7826 0.0269 10 6 2.0538 -5.2674 1.1933 11 8 1.5366 -4.4681 1.9446 12 7 1.8942 -6.5893 1.4020 13 6 1.0956 -7.0606 2.5362 14 6 1.0738 -8.5905 2.5439 15 1 0.5546 -8.9509 1.6559 16 6 0.3458 -9.0838 3.7958 17 8 0.9567 -8.5167 4.9567 18 7 2.4480 -9.0982 2.5460 19 6 2.7175 -10.3463 2.0511 20 1 1.9170 -10.9561 1.6588 21 6 4.0194 -10.8277 2.0535 22 7 4.9950 -10.0844 2.5311 23 14 4.3872 -12.5299 1.3777 24 1 4.6900 -12.4318 -0.0728 25 1 5.5573 -13.1032 2.0900 26 1 3.2065 -13.4080 1.5785 27 7 1.8238 -2.4817 0.0144 28 6 2.2188 -1.2163 0.0076 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.6620 2.1139 -0.0008 33 1 4.1467 2.0889 0.0001 34 1 5.3465 -0.0152 0.0024 35 1 5.0285 -2.8497 0.0047 36 1 2.4366 -5.1445 -0.9026 37 1 3.8944 -5.1599 0.1185 38 1 2.3088 -7.2286 0.8018 39 1 1.5351 -6.6984 3.4655 40 1 0.0770 -6.6836 2.4448 41 1 -0.7002 -8.7808 3.7511 42 1 0.4074 -10.1709 3.8472 43 1 0.5457 -8.7870 5.7892 44 1 3.1669 -8.5505 2.8981 45 1 5.9048 -10.4210 2.5332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755642045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:20 Heat of formation + Delta-G solvation = 14.189413 kcal Electronic energy + Delta-G solvation = -27629.793593 eV Core-core repulsion = 23648.985298 eV Total energy + Delta-G solvation = -3980.808294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84754 -39.18498 -37.67202 -36.97055 -34.80945 -34.59679 -33.34899 -32.13193 -31.25133 -30.28604 -28.49168 -27.66844 -27.09240 -24.93245 -23.59600 -22.89772 -22.28861 -20.92379 -20.02222 -19.53709 -17.72101 -17.49195 -17.08707 -16.60192 -16.45819 -15.94055 -15.76652 -15.43547 -14.98606 -14.51867 -14.34848 -14.11953 -13.89590 -13.58868 -13.39230 -13.35875 -12.96661 -12.88102 -12.80234 -12.69294 -12.25088 -11.95396 -11.86043 -11.79843 -11.51742 -11.29739 -10.86509 -10.82048 -10.69346 -10.50788 -10.08191 -9.97797 -9.76610 -9.40410 -9.28699 -8.96252 -8.67785 -8.40072 -7.84400 -7.01305 -5.79998 -3.09881 0.60340 1.19075 2.51126 2.78257 3.19671 3.39517 3.41330 3.45429 3.47122 3.83257 4.08188 4.27243 4.52969 4.54178 4.61669 4.79551 4.97389 5.08541 5.16380 5.22252 5.36858 5.42312 5.49235 5.49880 5.57936 5.58852 5.64613 5.69308 5.76341 5.80274 5.93942 5.96889 6.09078 6.12042 6.14679 6.39053 6.44728 6.56867 6.61031 6.82520 7.02091 7.08171 7.64081 7.93601 8.13188 8.25023 8.37286 8.81304 9.49465 10.05595 10.42453 11.41633 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017001 B = 0.002417 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.546357 B =11582.451701 C =12647.340044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.037 4.037 3 C -0.121 4.121 4 C -0.142 4.142 5 C 0.048 3.952 6 N -0.362 5.362 7 C -0.093 4.093 8 C 0.085 3.915 9 C -0.063 4.063 10 C 0.514 3.486 11 O -0.535 6.535 12 N -0.717 5.717 13 C 0.122 3.878 14 C 0.166 3.834 15 H 0.065 0.935 16 C 0.059 3.941 17 O -0.560 6.560 18 N -0.713 5.713 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 N -0.456 5.456 28 C 0.219 3.781 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.184 0.816 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.408 0.592 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.048 0.952 43 H 0.363 0.637 44 H 0.389 0.611 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 20.596 -6.599 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.039 4.039 3 C -0.144 4.144 4 C -0.163 4.163 5 C -0.074 4.074 6 N -0.034 5.034 7 C -0.224 4.224 8 C -0.049 4.049 9 C -0.104 4.104 10 C 0.299 3.701 11 O -0.412 6.412 12 N -0.369 5.369 13 C -0.003 4.003 14 C 0.054 3.946 15 H 0.083 0.917 16 C -0.022 4.022 17 O -0.363 6.363 18 N -0.354 5.354 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.206 4.206 22 N -0.574 5.574 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.209 1.209 27 N -0.175 5.175 28 C -0.025 4.025 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.201 0.799 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.244 0.756 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.208 0.792 44 H 0.223 0.777 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.374 20.944 -6.593 22.605 hybrid contribution 1.395 -1.273 0.035 1.889 sum -3.979 19.671 -6.558 21.113 Atomic orbital electron populations 1.20676 0.89048 1.03706 1.02840 1.19036 0.96942 0.88435 0.99508 1.20864 0.93711 0.97719 1.02147 1.20715 0.94780 0.97005 1.03776 1.21554 0.98544 0.83394 1.03868 1.42755 1.08821 1.05906 1.45889 1.22390 1.01052 0.80558 1.18407 1.20132 0.88162 0.95093 1.01481 1.20019 1.02571 0.88572 0.99212 1.20181 0.81293 0.82490 0.86160 1.90701 1.48666 1.54448 1.47344 1.45944 1.53291 1.06638 1.31049 1.21473 0.94651 0.94788 0.89353 1.20596 0.88974 0.90772 0.94212 0.91689 1.23037 0.93991 0.97449 0.87735 1.86577 1.60880 1.73126 1.15724 1.42371 1.01983 1.17424 1.73665 1.19224 0.92711 0.92662 1.33073 0.91221 1.24739 0.95854 0.98313 1.01653 1.69681 0.99718 1.36866 1.51122 0.86226 0.77499 0.84224 0.78376 1.21706 1.21855 1.20875 1.70626 1.29236 0.97404 1.20240 1.20797 0.80122 0.94439 1.07140 0.90663 0.91082 0.90034 0.84350 0.83469 0.82243 0.79916 0.87406 0.87095 0.75602 0.90881 0.92355 0.95551 0.93392 0.79236 0.77674 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.03 36.01 0.36 -0.67 16 2 C -0.04 -0.43 5.90 -104.40 -0.62 -1.04 16 3 C -0.12 -1.04 9.72 -39.54 -0.38 -1.42 16 4 C -0.14 -1.07 9.98 -39.91 -0.40 -1.47 16 5 C 0.05 0.44 10.95 -16.65 -0.18 0.26 16 6 N -0.36 -4.65 2.95 -62.66 -0.18 -4.83 16 7 C -0.09 -1.22 11.63 -16.43 -0.19 -1.41 16 8 C 0.09 1.32 5.85 -82.97 -0.49 0.84 16 9 C -0.06 -0.88 6.26 -29.03 -0.18 -1.07 16 10 C 0.51 9.25 7.82 -10.98 -0.09 9.16 16 11 O -0.54 -11.66 15.56 5.56 0.09 -11.58 16 12 N -0.72 -12.65 5.39 -60.29 -0.32 -12.97 16 13 C 0.12 2.27 5.12 -4.04 -0.02 2.25 16 14 C 0.17 3.21 2.84 -67.93 -0.19 3.02 16 15 H 0.07 1.20 8.08 -51.93 -0.42 0.79 16 16 C 0.06 1.06 6.86 37.16 0.25 1.31 16 17 O -0.56 -10.32 12.64 -35.23 -0.45 -10.76 16 18 N -0.71 -17.03 4.51 -53.42 -0.24 -17.27 16 19 C -0.25 -6.44 9.93 -15.06 -0.15 -6.59 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 23 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 N -0.46 -7.85 10.66 -9.00 -0.10 -7.94 16 28 C 0.22 3.24 7.52 -156.04 -1.17 2.07 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.11 1.31 8.10 -51.93 -0.42 0.89 16 38 H 0.41 7.01 8.14 -40.82 -0.33 6.68 16 39 H 0.07 1.55 7.40 -51.93 -0.38 1.16 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.36 4.86 9.12 45.56 0.42 5.27 16 44 H 0.39 10.32 7.80 -40.82 -0.32 10.00 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -36.72 385.43 -8.89 -45.61 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -5.65 Total: 18.85 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -3.54 Total: 4.89 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -0.12 Total: -69.43 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.36 Total: -22.34 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.72 -8.89 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755642045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.797 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds