Wall clock time and date at job start Tue Mar 31 2020 17:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36027 * 120.33686 * 2 1 4 4 C 1.40466 * 119.69338 * 179.97438 * 3 2 1 5 5 C 1.34946 * 120.30310 * 359.97438 * 4 3 2 6 6 N 1.36492 * 120.60813 * 359.97438 * 5 4 3 7 7 C 1.36839 * 132.56725 * 180.02562 * 6 5 4 8 8 C 1.35110 * 107.17263 * 179.35207 * 7 6 5 9 9 C 1.50708 * 125.68352 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46671 * 125.58425 * 9 8 7 11 11 O 1.21280 * 120.00214 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99672 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99799 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46917 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.46899 * 295.00384 * 14 13 12 16 16 C 1.52999 * 109.46844 * 175.00432 * 14 13 12 17 17 O 1.42909 * 109.47114 * 305.00041 * 16 14 13 18 18 N 1.46500 * 109.46602 * 55.00381 * 14 13 12 19 19 C 1.36939 * 119.99635 * 204.99561 * 18 14 13 20 20 H 1.08002 * 120.00109 * 0.02562 * 19 18 14 21 21 C 1.38810 * 119.99897 * 180.02562 * 19 18 14 22 22 N 1.31618 * 120.00225 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00017 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47069 * 89.99686 * 23 21 19 25 25 H 1.48499 * 109.47514 * 209.99910 * 23 21 19 26 26 H 1.48505 * 109.47336 * 330.00125 * 23 21 19 27 27 N 1.33509 * 108.62906 * 0.56131 * 8 7 6 28 28 C 1.32563 * 109.15839 * 359.49816 * 27 8 7 29 29 H 1.09002 * 109.47152 * 90.00165 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00265 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00246 * 1 2 3 32 32 H 1.08006 * 120.15121 * 359.95362 * 3 2 1 33 33 H 1.08003 * 119.84997 * 179.97438 * 4 3 2 34 34 H 1.08004 * 119.70084 * 180.02562 * 5 4 3 35 35 H 1.08000 * 126.41210 * 359.97438 * 7 6 5 36 36 H 1.08998 * 109.47388 * 245.58835 * 9 8 7 37 37 H 1.09004 * 109.46935 * 5.58637 * 9 8 7 38 38 H 0.96998 * 119.99569 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47200 * 300.00291 * 13 12 10 40 40 H 1.08998 * 109.46628 * 60.00084 * 13 12 10 41 41 H 1.08996 * 109.47655 * 64.99922 * 16 14 13 42 42 H 1.09000 * 109.46746 * 185.00607 * 16 14 13 43 43 H 0.96696 * 113.99962 * 180.02562 * 17 16 14 44 44 H 0.96994 * 120.00344 * 25.00435 * 18 14 13 45 45 H 0.97003 * 120.00131 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1740 0.0000 4 6 3.5987 1.1582 0.0005 5 6 4.2664 -0.0144 0.0016 6 7 3.5895 -1.1996 0.0027 7 6 4.0055 -2.5033 0.0043 8 6 2.8971 -3.2757 0.0193 9 6 2.8759 -4.7826 0.0269 10 6 2.0538 -5.2674 1.1933 11 8 1.5366 -4.4681 1.9446 12 7 1.8942 -6.5893 1.4020 13 6 1.0956 -7.0606 2.5362 14 6 1.0738 -8.5905 2.5439 15 1 0.5546 -8.9509 1.6559 16 6 0.3458 -9.0838 3.7958 17 8 0.9567 -8.5167 4.9567 18 7 2.4480 -9.0982 2.5460 19 6 2.7175 -10.3463 2.0511 20 1 1.9170 -10.9561 1.6588 21 6 4.0194 -10.8277 2.0535 22 7 4.9950 -10.0844 2.5311 23 14 4.3872 -12.5299 1.3777 24 1 4.6900 -12.4318 -0.0728 25 1 5.5573 -13.1032 2.0900 26 1 3.2065 -13.4080 1.5785 27 7 1.8238 -2.4817 0.0144 28 6 2.2188 -1.2163 0.0076 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.6620 2.1139 -0.0008 33 1 4.1467 2.0889 0.0001 34 1 5.3465 -0.0152 0.0024 35 1 5.0285 -2.8497 0.0047 36 1 2.4366 -5.1445 -0.9026 37 1 3.8944 -5.1599 0.1185 38 1 2.3088 -7.2286 0.8018 39 1 1.5351 -6.6984 3.4655 40 1 0.0770 -6.6836 2.4448 41 1 -0.7002 -8.7808 3.7511 42 1 0.4074 -10.1709 3.8472 43 1 0.5457 -8.7870 5.7892 44 1 3.1669 -8.5505 2.8981 45 1 5.9048 -10.4210 2.5332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755642045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:20 Heat of formation + Delta-G solvation = -13.751878 kcal Electronic energy + Delta-G solvation = -27631.005218 eV Core-core repulsion = 23648.985298 eV Total energy + Delta-G solvation = -3982.019920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.74182 -40.61670 -38.72411 -38.30139 -36.36234 -35.44306 -35.10421 -33.37962 -32.77361 -31.23874 -30.11285 -28.78083 -27.88262 -26.34305 -25.55404 -23.75977 -23.12844 -22.00103 -21.60557 -20.84215 -19.40373 -18.53160 -18.16892 -18.01790 -17.65765 -17.25871 -16.80776 -16.54653 -16.30653 -16.12273 -15.49345 -15.28677 -15.07353 -14.97832 -14.86271 -14.52488 -14.28262 -14.12717 -13.96111 -13.70690 -13.50231 -13.23501 -12.97002 -12.73270 -12.67847 -12.61342 -12.55383 -12.42499 -12.23473 -11.86782 -11.71281 -11.51186 -11.04873 -10.98130 -10.76579 -10.71188 -9.93129 -9.59658 -8.98347 -8.68943 -7.87632 -5.16817 -0.13490 0.36918 1.52003 1.52644 1.60486 1.67841 1.77155 1.85351 2.43501 2.59412 2.62764 3.21896 3.44298 3.49741 3.61971 3.78491 3.92220 3.96324 4.03116 4.06256 4.12237 4.29312 4.35176 4.44702 4.46086 4.56485 4.57313 4.62212 4.72554 4.76913 4.81357 4.91101 4.96991 5.00592 5.10532 5.20770 5.24759 5.38473 5.55665 5.61012 5.62682 5.70217 6.20662 6.31066 6.70061 6.97616 7.06266 7.38850 7.39328 8.11074 8.37574 9.35167 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017001 B = 0.002417 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.546357 B =11582.451701 C =12647.340044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.079 4.079 3 C -0.098 4.098 4 C -0.134 4.134 5 C 0.032 3.968 6 N -0.367 5.367 7 C -0.096 4.096 8 C 0.050 3.950 9 C -0.054 4.054 10 C 0.511 3.489 11 O -0.577 6.577 12 N -0.713 5.713 13 C 0.134 3.866 14 C 0.163 3.837 15 H 0.080 0.920 16 C 0.064 3.936 17 O -0.584 6.584 18 N -0.721 5.721 19 C -0.236 4.236 20 H 0.081 0.919 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.969 3.031 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.272 1.272 27 N -0.510 5.510 28 C 0.196 3.804 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.175 0.825 33 H 0.192 0.808 34 H 0.194 0.806 35 H 0.213 0.787 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.411 0.589 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.385 0.615 44 H 0.373 0.627 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 22.272 -7.546 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.154 4.154 5 C -0.089 4.089 6 N -0.039 5.039 7 C -0.228 4.228 8 C -0.083 4.083 9 C -0.094 4.094 10 C 0.298 3.702 11 O -0.457 6.457 12 N -0.365 5.365 13 C 0.009 3.991 14 C 0.053 3.947 15 H 0.097 0.903 16 C -0.017 4.017 17 O -0.391 6.391 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.098 0.902 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.799 3.201 24 H -0.213 1.213 25 H -0.231 1.231 26 H -0.197 1.197 27 N -0.230 5.230 28 C -0.048 4.048 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.192 0.808 33 H 0.209 0.791 34 H 0.211 0.789 35 H 0.230 0.770 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.248 0.752 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.233 0.767 44 H 0.205 0.795 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.288 22.605 -7.549 24.412 hybrid contribution 1.285 -1.588 0.368 2.076 sum -4.003 21.017 -7.182 22.568 Atomic orbital electron populations 1.20621 0.88594 1.03234 1.03109 1.19392 0.97735 0.88565 1.02483 1.21405 0.94544 0.97884 0.98302 1.21336 0.94551 0.98175 1.01315 1.22375 1.00378 0.82598 1.03558 1.42974 1.08449 1.06865 1.45567 1.22794 1.01661 0.80700 1.17604 1.20414 0.88946 0.95602 1.03378 1.20032 1.02982 0.88510 0.97903 1.20878 0.80808 0.81941 0.86591 1.90674 1.50488 1.55386 1.49134 1.45938 1.53071 1.06828 1.30662 1.21271 0.94999 0.94262 0.88596 1.20821 0.87100 0.90941 0.95788 0.90258 1.22892 0.95483 0.96655 0.86678 1.86531 1.61966 1.73484 1.17087 1.42456 1.03371 1.16710 1.73532 1.19608 0.92780 0.93209 1.31155 0.90152 1.25473 0.96001 1.01745 1.03121 1.69843 0.99707 1.38554 1.53521 0.85211 0.76961 0.80379 0.77545 1.21268 1.23079 1.19705 1.70514 1.30812 0.99024 1.22671 1.21303 0.81510 0.94722 1.07299 0.90093 0.88386 0.93511 0.80769 0.79075 0.78906 0.76992 0.85701 0.84870 0.75209 0.93669 0.91340 0.91891 0.94350 0.76739 0.79541 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.96 10.03 71.24 0.71 -1.24 16 2 C -0.08 -1.81 5.90 -19.72 -0.12 -1.92 16 3 C -0.10 -1.38 9.72 22.30 0.22 -1.17 16 4 C -0.13 -1.49 9.98 22.06 0.22 -1.27 16 5 C 0.03 0.49 10.95 83.21 0.91 1.40 16 6 N -0.37 -9.21 2.95 -352.15 -1.04 -10.25 16 7 C -0.10 -2.51 11.63 83.19 0.97 -1.54 16 8 C 0.05 1.59 5.85 41.59 0.24 1.84 16 9 C -0.05 -1.56 6.26 29.11 0.18 -1.37 16 10 C 0.51 19.05 7.82 87.66 0.69 19.73 16 11 O -0.58 -26.45 15.56 -3.03 -0.05 -26.49 16 12 N -0.71 -25.68 5.39 -463.05 -2.50 -28.17 16 13 C 0.13 5.04 5.12 86.38 0.44 5.48 16 14 C 0.16 6.21 2.84 44.99 0.13 6.34 16 15 H 0.08 2.82 8.08 -2.39 -0.02 2.80 16 16 C 0.06 2.18 6.86 71.98 0.49 2.67 16 17 O -0.58 -21.21 12.64 -148.98 -1.88 -23.09 16 18 N -0.72 -34.54 4.51 -322.94 -1.46 -35.99 16 19 C -0.24 -12.25 9.93 84.03 0.83 -11.42 16 20 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.97 -57.58 13.06 21.65 0.28 -57.30 16 23 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 24 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 N -0.51 -18.57 10.66 -182.40 -1.94 -20.51 16 28 C 0.20 5.95 7.52 134.10 1.01 6.96 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 31 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 32 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 34 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.21 3.82 8.06 -2.91 -0.02 3.80 16 36 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.13 3.13 8.10 -2.39 -0.02 3.11 16 38 H 0.41 14.28 8.14 -92.71 -0.75 13.53 16 39 H 0.04 1.97 7.40 -2.39 -0.02 1.95 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.38 9.90 9.12 -74.06 -0.68 9.23 16 44 H 0.37 20.22 7.80 -92.71 -0.72 19.50 16 45 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -83.87 385.43 -0.27 -84.14 By element: Atomic # 1 Polarization: 51.12 SS G_CDS: -1.11 Total: 50.01 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.40 Total: 21.06 kcal Atomic # 7 Polarization: -145.57 SS G_CDS: -6.65 Total: -152.22 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -1.93 Total: -49.58 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.87 -0.27 -84.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755642045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.388 kcal (2) G-P(sol) polarization free energy of solvation -83.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds