Wall clock time and date at job start Tue Mar 31 2020 16:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36326 * 119.74597 * 2 1 4 4 C 1.47524 * 120.16840 * 359.94329 * 3 2 1 5 5 O 1.21608 * 119.99799 * 306.23624 * 4 3 2 6 6 N 1.34775 * 120.00235 * 126.23759 * 4 3 2 7 7 C 1.46501 * 119.99548 * 4.46285 * 6 4 3 8 8 C 1.46492 * 120.00066 * 184.46312 * 6 4 3 9 9 C 1.53003 * 109.46879 * 89.99904 * 8 6 4 10 10 H 1.09000 * 109.47165 * 60.00305 * 9 8 6 11 11 O 1.42890 * 109.47229 * 299.99915 * 9 8 6 12 12 C 1.53010 * 109.46789 * 179.97438 * 9 8 6 13 13 N 1.46497 * 109.46827 * 185.00045 * 12 9 8 14 14 C 1.36939 * 120.00119 * 180.02562 * 13 12 9 15 15 H 1.08002 * 119.99687 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00137 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99846 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99865 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47355 * 59.99798 * 18 16 14 20 20 H 1.48501 * 109.47050 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46967 * 299.99674 * 18 16 14 22 22 C 1.46501 * 119.66504 * 180.23486 * 3 2 1 23 23 C 1.35531 * 119.05051 * 359.45514 * 22 3 2 24 24 C 1.41232 * 119.42308 * 0.25475 * 23 22 3 25 25 C 1.37907 * 132.97221 * 179.97438 * 24 23 22 26 26 N 1.33447 * 107.66315 * 180.02562 * 25 24 23 27 27 C 1.30743 * 109.93516 * 359.97438 * 26 25 24 28 28 N 1.35925 * 109.20944 * 359.97438 * 27 26 25 29 29 H 1.09010 * 109.46942 * 265.74865 * 1 2 3 30 30 H 1.08994 * 109.47420 * 25.74621 * 1 2 3 31 31 H 1.08995 * 109.47329 * 145.75406 * 1 2 3 32 32 H 1.08998 * 109.47141 * 84.67945 * 7 6 4 33 33 H 1.08997 * 109.46967 * 204.67228 * 7 6 4 34 34 H 1.08991 * 109.47570 * 324.67496 * 7 6 4 35 35 H 1.08995 * 109.47146 * 209.99777 * 8 6 4 36 36 H 1.09002 * 109.47704 * 329.99981 * 8 6 4 37 37 H 0.96703 * 114.00276 * 300.00117 * 11 9 8 38 38 H 1.08998 * 109.47416 * 305.00211 * 12 9 8 39 39 H 1.09001 * 109.46906 * 65.00437 * 12 9 8 40 40 H 0.97008 * 120.00209 * 0.02562 * 13 12 9 41 41 H 0.97007 * 119.99760 * 179.97438 * 17 16 14 42 42 H 1.08002 * 120.47609 * 179.72954 * 22 3 2 43 43 H 1.07997 * 120.29419 * 180.22891 * 23 22 3 44 44 H 1.08004 * 126.17154 * 359.97438 * 25 24 23 45 45 H 1.08003 * 125.39963 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4438 2.4601 -0.0013 5 8 0.6011 2.6737 -0.8516 6 7 1.7022 3.3896 0.9399 7 6 2.7838 3.1744 1.9043 8 6 0.9015 4.6149 0.9985 9 6 -0.3042 4.3929 1.9138 10 1 0.0420 4.1369 2.9152 11 8 -1.1032 3.3261 1.3988 12 6 -1.1402 5.6730 1.9755 13 7 -2.2267 5.5005 2.9430 14 6 -3.1111 6.5213 3.1686 15 1 -3.0073 7.4538 2.6336 16 6 -4.1402 6.3581 4.0857 17 7 -4.2663 5.2219 4.7380 18 14 -5.3470 7.7504 4.3929 19 1 -6.0451 8.0889 3.1268 20 1 -6.3436 7.3265 5.4090 21 1 -4.6120 8.9425 4.8869 22 6 3.6484 1.1816 -0.0052 23 6 4.3048 -0.0041 0.0013 24 6 3.5647 -1.2070 0.0075 25 6 3.9314 -2.5363 0.0142 26 7 2.8133 -3.2648 0.0174 27 6 1.7689 -2.4784 0.0137 28 7 2.1837 -1.1840 0.0084 29 1 -0.3633 -0.0762 1.0249 30 1 -0.3634 0.9256 -0.4464 31 1 -0.3634 -0.8494 -0.5783 32 1 3.7291 3.4971 1.4681 33 1 2.5850 3.7509 2.8077 34 1 2.8420 2.1152 2.1547 35 1 1.5110 5.4287 1.3914 36 1 0.5553 4.8710 -0.0028 37 1 -1.4461 3.4857 0.5088 38 1 -0.5078 6.5055 2.2839 39 1 -1.5598 5.8807 0.9911 40 1 -2.3196 4.6631 3.4238 41 1 -4.9853 5.1079 5.3792 42 1 4.1974 2.1116 -0.0097 43 1 5.3845 -0.0291 0.0014 44 1 4.9414 -2.9190 0.0157 45 1 0.7395 -2.8053 0.0147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755794649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:02 Heat of formation + Delta-G solvation = 25.419975 kcal Electronic energy + Delta-G solvation = -28508.843330 eV Core-core repulsion = 24528.522030 eV Total energy + Delta-G solvation = -3980.321301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.07340 -40.36959 -37.80240 -36.96399 -35.54688 -34.25623 -34.02503 -31.99134 -31.29692 -29.70299 -28.99852 -27.81060 -27.01004 -25.58562 -23.89507 -22.98065 -22.57500 -21.42256 -21.21239 -19.85037 -18.42530 -17.38938 -17.17607 -16.87922 -16.42328 -16.20671 -16.11738 -15.29956 -15.16957 -15.02592 -14.48300 -14.43658 -14.07049 -13.83469 -13.68025 -13.57466 -13.48970 -13.08574 -12.99799 -12.67799 -12.48639 -12.45152 -12.15623 -11.87461 -11.73840 -11.56254 -10.97073 -10.95814 -10.82063 -10.74747 -10.61262 -10.21621 -10.12800 -9.81925 -9.68379 -9.45516 -8.91213 -8.65399 -7.84053 -6.94539 -5.76905 -3.06509 0.40825 0.71923 2.03210 2.44400 2.72848 2.84295 3.08474 3.42786 3.47055 3.48393 3.96321 4.11603 4.24228 4.35214 4.45690 4.54889 4.58754 4.74756 4.87997 4.92241 5.00693 5.10490 5.14586 5.18455 5.25424 5.30403 5.40488 5.45857 5.50514 5.59911 5.64388 5.66609 5.74107 5.87786 5.95165 6.15640 6.17880 6.24255 6.32590 6.48568 6.68989 6.79554 7.11972 7.53477 7.66467 7.92149 8.08958 8.41301 9.52645 10.10064 10.45496 11.45384 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.002440 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.514518 B =11472.946986 C =12131.913680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.155 3.845 3 C -0.156 4.156 4 C 0.583 3.417 5 O -0.526 6.526 6 N -0.597 5.597 7 C 0.076 3.924 8 C 0.083 3.917 9 C 0.087 3.913 10 H 0.096 0.904 11 O -0.549 6.549 12 C 0.127 3.873 13 N -0.725 5.725 14 C -0.244 4.244 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.095 4.095 23 C -0.086 4.086 24 C 0.006 3.994 25 C -0.021 4.021 26 N -0.453 5.453 27 C 0.153 3.847 28 N -0.373 5.373 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.374 0.626 38 H 0.025 0.975 39 H 0.022 0.978 40 H 0.388 0.612 41 H 0.256 0.744 42 H 0.142 0.858 43 H 0.150 0.850 44 H 0.181 0.819 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.637 -10.775 -9.991 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.051 3.949 3 C -0.162 4.162 4 C 0.370 3.630 5 O -0.404 6.404 6 N -0.329 5.329 7 C -0.067 4.067 8 C -0.040 4.040 9 C 0.026 3.974 10 H 0.114 0.886 11 O -0.354 6.354 12 C -0.002 4.002 13 N -0.370 5.370 14 C -0.375 4.375 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.116 4.116 23 C -0.105 4.105 24 C -0.102 4.102 25 C -0.174 4.174 26 N -0.166 5.166 27 C -0.122 4.122 28 N -0.045 5.045 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.221 0.779 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.222 0.778 41 H 0.066 0.934 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.198 0.802 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 20.077 -11.686 -9.841 25.229 hybrid contribution -0.659 1.648 0.005 1.775 sum 19.417 -10.038 -9.836 23.970 Atomic orbital electron populations 1.21323 0.86525 1.06892 1.04790 1.20235 0.95304 0.82788 0.96556 1.20126 0.93910 0.92360 1.09790 1.17575 0.81753 0.82580 0.81073 1.90757 1.33779 1.78485 1.37344 1.47562 1.34155 1.19881 1.31302 1.21928 0.89232 1.02747 0.92816 1.22356 0.93622 0.85403 1.02635 1.22494 0.89157 0.88848 0.96893 0.88585 1.86529 1.69771 1.42649 1.36459 1.21230 0.90851 0.93991 0.94162 1.42235 1.30681 1.17016 1.47062 1.19168 1.05573 0.94069 1.18673 0.91315 1.24760 0.99312 0.97267 0.99535 1.69670 1.34206 1.24152 1.29821 0.86258 0.80926 0.81394 0.77523 1.21247 1.21652 1.21267 1.22056 0.91223 0.98703 0.99629 1.20366 1.00086 0.88876 1.01183 1.19744 0.82433 0.97135 1.10874 1.22574 0.98106 0.87023 1.09714 1.69977 0.97906 1.33011 1.15701 1.25156 1.00663 0.76386 1.09984 1.42951 1.07522 1.06603 1.47472 0.88960 0.86304 0.90358 0.92314 0.90266 0.91096 0.89271 0.89066 0.77908 0.95766 0.96050 0.77762 0.93436 0.83992 0.83192 0.80157 0.77062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.44 36.01 0.34 -1.10 16 2 C 0.16 1.71 6.82 -81.26 -0.55 1.16 16 3 C -0.16 -1.68 4.75 -103.47 -0.49 -2.17 16 4 C 0.58 7.17 5.97 -12.48 -0.07 7.10 16 5 O -0.53 -7.84 13.60 2.75 0.04 -7.81 16 6 N -0.60 -6.44 2.83 -182.82 -0.52 -6.96 16 7 C 0.08 0.59 9.18 59.85 0.55 1.14 16 8 C 0.08 0.97 5.14 -4.04 -0.02 0.95 16 9 C 0.09 1.34 3.27 -26.72 -0.09 1.25 16 10 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 11 O -0.55 -9.35 12.19 -37.75 -0.46 -9.81 16 12 C 0.13 2.42 5.90 -4.04 -0.02 2.39 16 13 N -0.73 -18.37 5.55 -59.91 -0.33 -18.71 16 14 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.10 -0.78 8.23 -37.22 -0.31 -1.09 16 23 C -0.09 -0.66 10.09 -39.41 -0.40 -1.06 16 24 C 0.01 0.06 6.78 -84.02 -0.57 -0.51 16 25 C -0.02 -0.21 12.00 -16.97 -0.20 -0.42 16 26 N -0.45 -5.27 11.19 -13.78 -0.15 -5.42 16 27 C 0.15 1.58 12.13 -89.36 -1.08 0.50 16 28 N -0.37 -4.02 2.94 -57.74 -0.17 -4.19 16 29 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.12 1.47 5.38 -51.93 -0.28 1.19 16 31 H 0.08 0.65 7.65 -51.93 -0.40 0.25 16 32 H 0.06 0.32 7.28 -51.93 -0.38 -0.06 16 33 H 0.08 0.57 8.03 -51.93 -0.42 0.16 16 34 H 0.07 0.56 6.48 -51.93 -0.34 0.22 16 35 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.09 1.13 7.36 -51.93 -0.38 0.75 16 37 H 0.37 5.92 8.60 45.56 0.39 6.32 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.39 10.60 7.67 -40.82 -0.31 10.29 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.14 0.83 6.92 -52.49 -0.36 0.47 16 43 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 45 H 0.21 1.50 7.85 -52.48 -0.41 1.09 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -35.37 373.54 -8.83 -44.19 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -5.39 Total: 12.68 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.17 Total: 0.70 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.45 Total: -62.98 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.42 Total: -17.62 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.37 -8.83 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755794649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.614 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds