Wall clock time and date at job start Tue Mar 31 2020 16:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36326 * 119.74597 * 2 1 4 4 C 1.47524 * 120.16840 * 359.94329 * 3 2 1 5 5 O 1.21608 * 119.99799 * 306.23624 * 4 3 2 6 6 N 1.34775 * 120.00235 * 126.23759 * 4 3 2 7 7 C 1.46501 * 119.99548 * 4.46285 * 6 4 3 8 8 C 1.46492 * 120.00066 * 184.46312 * 6 4 3 9 9 C 1.53003 * 109.46879 * 89.99904 * 8 6 4 10 10 H 1.09000 * 109.47165 * 60.00305 * 9 8 6 11 11 O 1.42890 * 109.47229 * 299.99915 * 9 8 6 12 12 C 1.53010 * 109.46789 * 179.97438 * 9 8 6 13 13 N 1.46497 * 109.46827 * 185.00045 * 12 9 8 14 14 C 1.36939 * 120.00119 * 180.02562 * 13 12 9 15 15 H 1.08002 * 119.99687 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00137 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99846 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99865 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47355 * 59.99798 * 18 16 14 20 20 H 1.48501 * 109.47050 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46967 * 299.99674 * 18 16 14 22 22 C 1.46501 * 119.66504 * 180.23486 * 3 2 1 23 23 C 1.35531 * 119.05051 * 359.45514 * 22 3 2 24 24 C 1.41232 * 119.42308 * 0.25475 * 23 22 3 25 25 C 1.37907 * 132.97221 * 179.97438 * 24 23 22 26 26 N 1.33447 * 107.66315 * 180.02562 * 25 24 23 27 27 C 1.30743 * 109.93516 * 359.97438 * 26 25 24 28 28 N 1.35925 * 109.20944 * 359.97438 * 27 26 25 29 29 H 1.09010 * 109.46942 * 265.74865 * 1 2 3 30 30 H 1.08994 * 109.47420 * 25.74621 * 1 2 3 31 31 H 1.08995 * 109.47329 * 145.75406 * 1 2 3 32 32 H 1.08998 * 109.47141 * 84.67945 * 7 6 4 33 33 H 1.08997 * 109.46967 * 204.67228 * 7 6 4 34 34 H 1.08991 * 109.47570 * 324.67496 * 7 6 4 35 35 H 1.08995 * 109.47146 * 209.99777 * 8 6 4 36 36 H 1.09002 * 109.47704 * 329.99981 * 8 6 4 37 37 H 0.96703 * 114.00276 * 300.00117 * 11 9 8 38 38 H 1.08998 * 109.47416 * 305.00211 * 12 9 8 39 39 H 1.09001 * 109.46906 * 65.00437 * 12 9 8 40 40 H 0.97008 * 120.00209 * 0.02562 * 13 12 9 41 41 H 0.97007 * 119.99760 * 179.97438 * 17 16 14 42 42 H 1.08002 * 120.47609 * 179.72954 * 22 3 2 43 43 H 1.07997 * 120.29419 * 180.22891 * 23 22 3 44 44 H 1.08004 * 126.17154 * 359.97438 * 25 24 23 45 45 H 1.08003 * 125.39963 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4438 2.4601 -0.0013 5 8 0.6011 2.6737 -0.8516 6 7 1.7022 3.3896 0.9399 7 6 2.7838 3.1744 1.9043 8 6 0.9015 4.6149 0.9985 9 6 -0.3042 4.3929 1.9138 10 1 0.0420 4.1369 2.9152 11 8 -1.1032 3.3261 1.3988 12 6 -1.1402 5.6730 1.9755 13 7 -2.2267 5.5005 2.9430 14 6 -3.1111 6.5213 3.1686 15 1 -3.0073 7.4538 2.6336 16 6 -4.1402 6.3581 4.0857 17 7 -4.2663 5.2219 4.7380 18 14 -5.3470 7.7504 4.3929 19 1 -6.0451 8.0889 3.1268 20 1 -6.3436 7.3265 5.4090 21 1 -4.6120 8.9425 4.8869 22 6 3.6484 1.1816 -0.0052 23 6 4.3048 -0.0041 0.0013 24 6 3.5647 -1.2070 0.0075 25 6 3.9314 -2.5363 0.0142 26 7 2.8133 -3.2648 0.0174 27 6 1.7689 -2.4784 0.0137 28 7 2.1837 -1.1840 0.0084 29 1 -0.3633 -0.0762 1.0249 30 1 -0.3634 0.9256 -0.4464 31 1 -0.3634 -0.8494 -0.5783 32 1 3.7291 3.4971 1.4681 33 1 2.5850 3.7509 2.8077 34 1 2.8420 2.1152 2.1547 35 1 1.5110 5.4287 1.3914 36 1 0.5553 4.8710 -0.0028 37 1 -1.4461 3.4857 0.5088 38 1 -0.5078 6.5055 2.2839 39 1 -1.5598 5.8807 0.9911 40 1 -2.3196 4.6631 3.4238 41 1 -4.9853 5.1079 5.3792 42 1 4.1974 2.1116 -0.0097 43 1 5.3845 -0.0291 0.0014 44 1 4.9414 -2.9190 0.0157 45 1 0.7395 -2.8053 0.0147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755794649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:01 Heat of formation + Delta-G solvation = 1.106071 kcal Electronic energy + Delta-G solvation = -28509.897660 eV Core-core repulsion = 24528.522030 eV Total energy + Delta-G solvation = -3981.375631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.80839 -41.28530 -38.93293 -37.91206 -36.55836 -35.87721 -34.94410 -33.24133 -32.72653 -30.96422 -29.84036 -28.58463 -28.00985 -26.86148 -25.18102 -23.98258 -23.66575 -22.64045 -22.12760 -20.72159 -19.23446 -19.17988 -18.19973 -17.95830 -17.21015 -17.10403 -17.00248 -16.56750 -16.39206 -16.15457 -15.96856 -15.35936 -15.10423 -14.92925 -14.70335 -14.49617 -14.40422 -14.31128 -14.11285 -13.77203 -13.66793 -13.33969 -13.23710 -12.97201 -12.75585 -12.67559 -12.54170 -12.43815 -12.21343 -12.04332 -11.82017 -11.65238 -11.39195 -11.18137 -10.98221 -10.95034 -10.23910 -9.61444 -9.01420 -8.54590 -7.95184 -5.24803 -0.34869 0.04046 1.22278 1.46421 1.49905 1.56024 1.63036 1.92191 2.05995 2.36178 2.55433 3.20275 3.34529 3.37826 3.53719 3.59824 3.67951 3.76002 3.81538 3.90000 4.05000 4.15992 4.28244 4.31890 4.40781 4.44627 4.47720 4.53762 4.55188 4.63296 4.74721 4.78882 4.90878 4.93592 4.97287 5.04607 5.11303 5.24935 5.41083 5.47647 5.48407 5.58893 6.04415 6.25601 6.26518 6.79096 6.79792 7.02281 7.32257 8.08902 8.31043 9.27975 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.002440 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.514518 B =11472.946986 C =12131.913680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.135 3.865 3 C -0.159 4.159 4 C 0.579 3.421 5 O -0.560 6.560 6 N -0.595 5.595 7 C 0.069 3.931 8 C 0.094 3.906 9 C 0.097 3.903 10 H 0.089 0.911 11 O -0.565 6.565 12 C 0.124 3.876 13 N -0.741 5.741 14 C -0.247 4.247 15 H 0.078 0.922 16 C -0.078 4.078 17 N -0.970 5.970 18 Si 0.976 3.024 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.274 1.274 22 C -0.099 4.099 23 C -0.075 4.075 24 C -0.010 4.010 25 C -0.029 4.029 26 N -0.481 5.481 27 C 0.141 3.859 28 N -0.378 5.378 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.376 0.624 38 H 0.041 0.959 39 H 0.023 0.977 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.170 0.830 43 H 0.188 0.812 44 H 0.207 0.793 45 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.060 -9.734 -10.397 27.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.031 3.969 3 C -0.165 4.165 4 C 0.367 3.633 5 O -0.440 6.440 6 N -0.325 5.325 7 C -0.073 4.073 8 C -0.029 4.029 9 C 0.036 3.964 10 H 0.107 0.893 11 O -0.371 6.371 12 C -0.004 4.004 13 N -0.384 5.384 14 C -0.379 4.379 15 H 0.096 0.904 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.804 3.196 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.200 1.200 22 C -0.119 4.119 23 C -0.094 4.094 24 C -0.118 4.118 25 C -0.181 4.181 26 N -0.194 5.194 27 C -0.134 4.134 28 N -0.050 5.050 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.103 0.897 37 H 0.224 0.776 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.188 0.812 43 H 0.205 0.795 44 H 0.223 0.777 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 22.558 -10.618 -10.266 26.963 hybrid contribution -1.333 1.298 0.091 1.863 sum 21.224 -9.321 -10.175 25.316 Atomic orbital electron populations 1.21200 0.86891 1.06446 1.04431 1.20251 0.95393 0.83243 0.97968 1.20234 0.95421 0.91395 1.09496 1.17865 0.81372 0.83163 0.80916 1.90739 1.35217 1.79183 1.38851 1.47619 1.34385 1.19165 1.31351 1.22184 0.89463 1.02978 0.92634 1.22157 0.92684 0.86706 1.01368 1.22401 0.89785 0.86616 0.97572 0.89305 1.86511 1.70406 1.43365 1.36773 1.21448 0.89897 0.96501 0.92524 1.42462 1.31945 1.15859 1.48136 1.19625 1.05640 0.94804 1.17842 0.90445 1.25623 1.01574 0.99772 1.00028 1.69842 1.34991 1.26336 1.30885 0.85181 0.78464 0.78661 0.77262 1.20477 1.22281 1.20019 1.22307 0.89750 1.00155 0.99724 1.20815 1.01742 0.87586 0.99227 1.20247 0.82357 0.98157 1.11034 1.23088 0.98843 0.87069 1.09134 1.69982 0.98814 1.33886 1.16765 1.25622 1.01491 0.76392 1.09851 1.43017 1.08028 1.06475 1.47511 0.89610 0.88389 0.88787 0.89103 0.89634 0.91298 0.86208 0.89653 0.77582 0.94085 0.95915 0.79435 0.94061 0.81248 0.79478 0.77654 0.75163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.44 71.24 0.67 -2.21 16 2 C 0.14 2.96 6.82 41.41 0.28 3.24 16 3 C -0.16 -3.26 4.75 -19.12 -0.09 -3.35 16 4 C 0.58 13.79 5.97 86.69 0.52 14.31 16 5 O -0.56 -16.85 13.60 -1.64 -0.02 -16.88 16 6 N -0.59 -11.74 2.83 -850.58 -2.40 -14.15 16 7 C 0.07 0.87 9.18 127.77 1.17 2.04 16 8 C 0.09 2.04 5.14 86.38 0.44 2.48 16 9 C 0.10 2.93 3.27 30.60 0.10 3.03 16 10 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 11 O -0.56 -19.61 12.19 -146.57 -1.79 -21.40 16 12 C 0.12 4.63 5.90 86.38 0.51 5.14 16 13 N -0.74 -37.79 5.55 -343.44 -1.91 -39.69 16 14 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 15 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 16 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 17 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 18 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 C -0.10 -1.34 8.23 23.80 0.20 -1.14 16 23 C -0.07 -0.92 10.09 22.38 0.23 -0.69 16 24 C -0.01 -0.19 6.78 38.81 0.26 0.08 16 25 C -0.03 -0.54 12.00 84.37 1.01 0.47 16 26 N -0.48 -10.94 11.19 -197.51 -2.21 -13.15 16 27 C 0.14 2.89 12.13 179.91 2.18 5.07 16 28 N -0.38 -7.93 2.94 -336.60 -0.99 -8.92 16 29 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.10 2.58 5.38 -2.39 -0.01 2.56 16 31 H 0.09 1.63 7.65 -2.39 -0.02 1.61 16 32 H 0.09 0.59 7.28 -2.39 -0.02 0.57 16 33 H 0.08 0.99 8.03 -2.39 -0.02 0.97 16 34 H 0.07 0.92 6.48 -2.39 -0.02 0.91 16 35 H 0.12 1.88 8.07 -2.39 -0.02 1.86 16 36 H 0.09 2.00 7.36 -2.39 -0.02 1.99 16 37 H 0.38 12.36 8.60 -74.06 -0.64 11.72 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.37 20.90 7.67 -92.70 -0.71 20.19 16 41 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 42 H 0.17 1.27 6.92 -2.91 -0.02 1.25 16 43 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 44 H 0.21 2.41 8.06 -2.91 -0.02 2.38 16 45 H 0.23 3.29 7.85 -2.91 -0.02 3.27 16 Total: -1.00 -77.82 373.54 1.48 -76.34 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.31 Total: 38.31 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 8.79 Total: 11.41 kcal Atomic # 7 Polarization: -128.82 SS G_CDS: -7.23 Total: -136.05 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.81 Total: -38.28 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -77.82 1.48 -76.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755794649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.445 kcal (2) G-P(sol) polarization free energy of solvation -77.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds