Wall clock time and date at job start Tue Mar 31 2020 16:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36325 * 119.74854 * 2 1 4 4 C 1.47524 * 120.16569 * 359.97438 * 3 2 1 5 5 O 1.21601 * 119.99630 * 51.39351 * 4 3 2 6 6 N 1.34774 * 120.00121 * 231.39399 * 4 3 2 7 7 C 1.46496 * 119.99769 * 355.56097 * 6 4 3 8 8 C 1.46498 * 120.00259 * 175.56691 * 6 4 3 9 9 C 1.52998 * 109.47473 * 89.99454 * 8 6 4 10 10 H 1.09003 * 109.47156 * 305.00128 * 9 8 6 11 11 O 1.42901 * 109.46629 * 65.00148 * 9 8 6 12 12 C 1.52998 * 109.47255 * 185.00269 * 9 8 6 13 13 N 1.46501 * 109.47219 * 180.02562 * 12 9 8 14 14 C 1.36932 * 119.99884 * 179.72830 * 13 12 9 15 15 H 1.08000 * 120.00418 * 0.26701 * 14 13 12 16 16 C 1.38818 * 119.99820 * 180.27766 * 14 13 12 17 17 N 1.31621 * 119.99825 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99838 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47142 * 89.99806 * 18 16 14 20 20 H 1.48501 * 109.46806 * 209.99134 * 18 16 14 21 21 H 1.48499 * 109.47286 * 329.99514 * 18 16 14 22 22 C 1.46497 * 119.66716 * 179.72771 * 3 2 1 23 23 C 1.35542 * 119.04492 * 0.27266 * 22 3 2 24 24 C 1.41217 * 119.42653 * 0.02562 * 23 22 3 25 25 C 1.37918 * 132.97047 * 179.97438 * 24 23 22 26 26 N 1.33450 * 107.65813 * 180.02562 * 25 24 23 27 27 C 1.30743 * 109.93958 * 0.02562 * 26 25 24 28 28 N 1.35919 * 109.20849 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47266 * 84.12581 * 1 2 3 30 30 H 1.09002 * 109.47450 * 204.12531 * 1 2 3 31 31 H 1.08998 * 109.47064 * 324.12502 * 1 2 3 32 32 H 1.09000 * 109.47682 * 275.15632 * 7 6 4 33 33 H 1.08998 * 109.47480 * 35.15891 * 7 6 4 34 34 H 1.09001 * 109.47186 * 155.15894 * 7 6 4 35 35 H 1.09005 * 109.46595 * 329.99427 * 8 6 4 36 36 H 1.08999 * 109.46874 * 210.00191 * 8 6 4 37 37 H 0.96700 * 114.00258 * 60.00636 * 11 9 8 38 38 H 1.09000 * 109.47321 * 59.99920 * 12 9 8 39 39 H 1.09003 * 109.46923 * 300.00002 * 12 9 8 40 40 H 0.97003 * 119.99771 * 359.97438 * 13 12 9 41 41 H 0.97001 * 119.99425 * 180.02562 * 17 16 14 42 42 H 1.07999 * 120.48003 * 180.29548 * 22 3 2 43 43 H 1.07998 * 120.28443 * 179.97438 * 23 22 3 44 44 H 1.07995 * 126.16919 * 359.97438 * 25 24 23 45 45 H 1.08004 * 125.39707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4439 2.4601 -0.0006 5 8 0.5702 2.6569 0.8220 6 7 1.7366 3.4081 -0.9128 7 6 2.8528 3.2116 -1.8409 8 6 0.9386 4.6350 -0.9760 9 6 1.5542 5.6919 -0.0569 10 1 1.6490 5.2865 0.9506 11 8 2.8462 6.0554 -0.5475 12 6 0.6537 6.9283 -0.0264 13 7 1.2435 7.9405 0.8533 14 6 0.6128 9.1425 1.0333 15 1 -0.3217 9.3428 0.5302 16 6 1.1746 10.1039 1.8623 17 7 2.3132 9.8597 2.4757 18 14 0.3145 11.7439 2.1073 19 1 -0.6143 11.6481 3.2621 20 1 1.3260 12.7985 2.3718 21 1 -0.4518 12.0888 0.8830 22 6 3.6484 1.1815 0.0060 23 6 4.3048 -0.0044 0.0059 24 6 3.5646 -1.2070 -0.0006 25 6 3.9314 -2.5366 -0.0029 26 7 2.8132 -3.2649 -0.0101 27 6 1.7688 -2.4784 -0.0131 28 7 2.1836 -1.1841 -0.0072 29 1 -0.3634 0.1052 -1.0223 30 1 -0.3634 -0.9379 0.4200 31 1 -0.3633 0.8327 0.6022 32 1 3.7812 3.5275 -1.3650 33 1 2.9221 2.1571 -2.1080 34 1 2.6859 3.8040 -2.7406 35 1 -0.0807 4.4224 -0.6537 36 1 0.9255 5.0074 -2.0004 37 1 2.8380 6.4246 -1.4413 38 1 -0.3318 6.6510 0.3478 39 1 0.5589 7.3337 -1.0338 40 1 2.0826 7.7606 1.3054 41 1 2.7056 10.5313 3.0552 42 1 4.1975 2.1115 0.0109 43 1 5.3845 -0.0293 0.0099 44 1 4.9412 -2.9192 -0.0002 45 1 0.7394 -2.8053 -0.0185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755794650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:06 Heat of formation + Delta-G solvation = 26.285780 kcal Electronic energy + Delta-G solvation = -28194.017872 eV Core-core repulsion = 24213.734116 eV Total energy + Delta-G solvation = -3980.283757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.12930 -40.40695 -37.89536 -37.08979 -35.52044 -34.29743 -34.01261 -32.07788 -31.32026 -29.78848 -29.04815 -27.91304 -26.88886 -25.65795 -23.91940 -23.01020 -22.62850 -21.48065 -21.24819 -19.89744 -18.44897 -17.44856 -17.17603 -16.80118 -16.52419 -16.28440 -15.98348 -15.69774 -15.25115 -14.78955 -14.51178 -14.45870 -14.05973 -13.94962 -13.77048 -13.72548 -13.47129 -13.09964 -12.98570 -12.74018 -12.65965 -12.48827 -12.12537 -11.90768 -11.81824 -11.54886 -11.00264 -10.94831 -10.82940 -10.72243 -10.66790 -10.27199 -10.15731 -9.84256 -9.70117 -9.50727 -8.89958 -8.65675 -7.88146 -6.92395 -5.74985 -3.04550 0.32789 0.69295 1.99967 2.34662 2.71493 2.79698 3.02233 3.43636 3.48150 3.50259 3.86085 4.08014 4.19427 4.32363 4.40900 4.54416 4.54731 4.70262 4.81699 4.90271 4.97513 5.01158 5.04609 5.12108 5.13996 5.24590 5.36624 5.53628 5.54641 5.56501 5.62596 5.63850 5.70936 5.76656 5.94986 6.11065 6.18742 6.21129 6.32665 6.51449 6.70988 6.73446 7.07998 7.48062 7.68308 7.86159 7.98767 8.43161 9.54583 10.12401 10.48086 11.47381 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027701 B = 0.002207 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.539093 B =12684.814827 C =12916.376208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.146 3.854 3 C -0.149 4.149 4 C 0.572 3.428 5 O -0.524 6.524 6 N -0.595 5.595 7 C 0.080 3.920 8 C 0.087 3.913 9 C 0.086 3.914 10 H 0.101 0.899 11 O -0.550 6.550 12 C 0.127 3.873 13 N -0.725 5.725 14 C -0.243 4.243 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.093 4.093 23 C -0.085 4.085 24 C 0.009 3.991 25 C -0.021 4.021 26 N -0.452 5.452 27 C 0.148 3.852 28 N -0.372 5.372 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.367 0.633 38 H 0.027 0.973 39 H 0.019 0.981 40 H 0.389 0.611 41 H 0.255 0.745 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.182 0.818 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 -24.167 -11.831 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.042 3.958 3 C -0.155 4.155 4 C 0.358 3.642 5 O -0.401 6.401 6 N -0.327 5.327 7 C -0.063 4.063 8 C -0.036 4.036 9 C 0.025 3.975 10 H 0.119 0.881 11 O -0.354 6.354 12 C -0.002 4.002 13 N -0.370 5.370 14 C -0.374 4.374 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.114 4.114 23 C -0.104 4.104 24 C -0.099 4.099 25 C -0.174 4.174 26 N -0.165 5.165 27 C -0.127 4.127 28 N -0.045 5.045 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.213 0.787 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.199 0.801 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.239 -25.063 -10.842 27.336 hybrid contribution -0.231 1.957 -0.222 1.983 sum 1.008 -23.106 -11.064 25.638 Atomic orbital electron populations 1.21280 0.87021 1.06241 1.04828 1.20138 0.95031 0.82902 0.97744 1.20154 0.94131 0.92177 1.09080 1.17717 0.82577 0.82808 0.81072 1.90816 1.32576 1.79788 1.36944 1.47603 1.32636 1.18198 1.34218 1.21956 0.89478 1.01793 0.93109 1.22351 0.96189 0.84021 1.01042 1.22547 0.83850 0.93242 0.97812 0.88065 1.86616 1.28656 1.84323 1.35811 1.21211 0.95212 0.89054 0.94735 1.42235 1.27133 1.13667 1.53956 1.19213 1.03694 0.91599 1.22902 0.91267 1.24771 0.97406 0.98702 1.00078 1.69686 1.19078 1.34845 1.34170 0.86181 0.78362 0.83719 0.77846 1.21688 1.21743 1.20789 1.22183 0.91183 0.99058 0.98956 1.20416 1.00273 0.88774 1.00960 1.19768 0.82330 0.97176 1.10585 1.22586 0.98110 0.87002 1.09726 1.69967 0.97922 1.33017 1.15605 1.25092 1.00608 0.76401 1.10574 1.42926 1.07581 1.06503 1.47509 0.89480 0.90328 0.86437 0.91426 0.91505 0.90669 0.88705 0.89780 0.78686 0.95528 0.96305 0.77658 0.93491 0.83474 0.82997 0.80081 0.77176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.36 36.01 0.34 -0.77 16 2 C 0.15 1.45 6.82 -81.26 -0.55 0.90 16 3 C -0.15 -1.59 4.84 -103.48 -0.50 -2.09 16 4 C 0.57 7.16 6.64 -12.48 -0.08 7.08 16 5 O -0.52 -8.29 14.47 5.28 0.08 -8.21 16 6 N -0.60 -6.43 2.84 -182.82 -0.52 -6.95 16 7 C 0.08 0.61 8.77 59.84 0.52 1.13 16 8 C 0.09 1.02 5.07 -4.04 -0.02 1.00 16 9 C 0.09 1.36 3.30 -26.73 -0.09 1.28 16 10 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 11 O -0.55 -8.59 12.64 -35.23 -0.45 -9.04 16 12 C 0.13 2.47 5.92 -4.04 -0.02 2.45 16 13 N -0.73 -18.70 5.49 -59.91 -0.33 -19.03 16 14 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 18 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.09 -0.83 8.13 -37.22 -0.30 -1.14 16 23 C -0.08 -0.68 10.09 -39.41 -0.40 -1.08 16 24 C 0.01 0.09 6.78 -84.02 -0.57 -0.48 16 25 C -0.02 -0.21 12.00 -16.97 -0.20 -0.41 16 26 N -0.45 -4.94 11.19 -13.78 -0.15 -5.09 16 27 C 0.15 1.37 12.09 -89.37 -1.08 0.29 16 28 N -0.37 -3.71 2.94 -57.74 -0.17 -3.88 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.47 7.21 -51.93 -0.37 0.10 16 31 H 0.12 1.21 5.67 -51.93 -0.29 0.91 16 32 H 0.07 0.53 7.16 -51.93 -0.37 0.16 16 33 H 0.07 0.45 6.39 -51.93 -0.33 0.12 16 34 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 35 H 0.09 1.19 7.49 -51.93 -0.39 0.80 16 36 H 0.08 0.77 7.86 -51.93 -0.41 0.36 16 37 H 0.37 4.47 9.05 45.56 0.41 4.88 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.39 10.85 7.54 -40.82 -0.31 10.55 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.15 1.16 6.69 -52.49 -0.35 0.81 16 43 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.21 1.19 7.59 -52.48 -0.40 0.79 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -36.58 374.10 -8.71 -45.30 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.30 Total: 11.06 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -3.21 Total: 0.64 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.45 Total: -62.97 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.37 Total: -17.24 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.58 -8.71 -45.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755794650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.582 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds