Wall clock time and date at job start Tue Mar 31 2020 16:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36325 * 119.74854 * 2 1 4 4 C 1.47524 * 120.16569 * 359.97438 * 3 2 1 5 5 O 1.21601 * 119.99630 * 51.39351 * 4 3 2 6 6 N 1.34774 * 120.00121 * 231.39399 * 4 3 2 7 7 C 1.46496 * 119.99769 * 355.56097 * 6 4 3 8 8 C 1.46498 * 120.00259 * 175.56691 * 6 4 3 9 9 C 1.52998 * 109.47473 * 89.99454 * 8 6 4 10 10 H 1.09003 * 109.47156 * 305.00128 * 9 8 6 11 11 O 1.42901 * 109.46629 * 65.00148 * 9 8 6 12 12 C 1.52998 * 109.47255 * 185.00269 * 9 8 6 13 13 N 1.46501 * 109.47219 * 180.02562 * 12 9 8 14 14 C 1.36932 * 119.99884 * 179.72830 * 13 12 9 15 15 H 1.08000 * 120.00418 * 0.26701 * 14 13 12 16 16 C 1.38818 * 119.99820 * 180.27766 * 14 13 12 17 17 N 1.31621 * 119.99825 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99838 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47142 * 89.99806 * 18 16 14 20 20 H 1.48501 * 109.46806 * 209.99134 * 18 16 14 21 21 H 1.48499 * 109.47286 * 329.99514 * 18 16 14 22 22 C 1.46497 * 119.66716 * 179.72771 * 3 2 1 23 23 C 1.35542 * 119.04492 * 0.27266 * 22 3 2 24 24 C 1.41217 * 119.42653 * 0.02562 * 23 22 3 25 25 C 1.37918 * 132.97047 * 179.97438 * 24 23 22 26 26 N 1.33450 * 107.65813 * 180.02562 * 25 24 23 27 27 C 1.30743 * 109.93958 * 0.02562 * 26 25 24 28 28 N 1.35919 * 109.20849 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47266 * 84.12581 * 1 2 3 30 30 H 1.09002 * 109.47450 * 204.12531 * 1 2 3 31 31 H 1.08998 * 109.47064 * 324.12502 * 1 2 3 32 32 H 1.09000 * 109.47682 * 275.15632 * 7 6 4 33 33 H 1.08998 * 109.47480 * 35.15891 * 7 6 4 34 34 H 1.09001 * 109.47186 * 155.15894 * 7 6 4 35 35 H 1.09005 * 109.46595 * 329.99427 * 8 6 4 36 36 H 1.08999 * 109.46874 * 210.00191 * 8 6 4 37 37 H 0.96700 * 114.00258 * 60.00636 * 11 9 8 38 38 H 1.09000 * 109.47321 * 59.99920 * 12 9 8 39 39 H 1.09003 * 109.46923 * 300.00002 * 12 9 8 40 40 H 0.97003 * 119.99771 * 359.97438 * 13 12 9 41 41 H 0.97001 * 119.99425 * 180.02562 * 17 16 14 42 42 H 1.07999 * 120.48003 * 180.29548 * 22 3 2 43 43 H 1.07998 * 120.28443 * 179.97438 * 23 22 3 44 44 H 1.07995 * 126.16919 * 359.97438 * 25 24 23 45 45 H 1.08004 * 125.39707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4439 2.4601 -0.0006 5 8 0.5702 2.6569 0.8220 6 7 1.7366 3.4081 -0.9128 7 6 2.8528 3.2116 -1.8409 8 6 0.9386 4.6350 -0.9760 9 6 1.5542 5.6919 -0.0569 10 1 1.6490 5.2865 0.9506 11 8 2.8462 6.0554 -0.5475 12 6 0.6537 6.9283 -0.0264 13 7 1.2435 7.9405 0.8533 14 6 0.6128 9.1425 1.0333 15 1 -0.3217 9.3428 0.5302 16 6 1.1746 10.1039 1.8623 17 7 2.3132 9.8597 2.4757 18 14 0.3145 11.7439 2.1073 19 1 -0.6143 11.6481 3.2621 20 1 1.3260 12.7985 2.3718 21 1 -0.4518 12.0888 0.8830 22 6 3.6484 1.1815 0.0060 23 6 4.3048 -0.0044 0.0059 24 6 3.5646 -1.2070 -0.0006 25 6 3.9314 -2.5366 -0.0029 26 7 2.8132 -3.2649 -0.0101 27 6 1.7688 -2.4784 -0.0131 28 7 2.1836 -1.1841 -0.0072 29 1 -0.3634 0.1052 -1.0223 30 1 -0.3634 -0.9379 0.4200 31 1 -0.3633 0.8327 0.6022 32 1 3.7812 3.5275 -1.3650 33 1 2.9221 2.1571 -2.1080 34 1 2.6859 3.8040 -2.7406 35 1 -0.0807 4.4224 -0.6537 36 1 0.9255 5.0074 -2.0004 37 1 2.8380 6.4246 -1.4413 38 1 -0.3318 6.6510 0.3478 39 1 0.5589 7.3337 -1.0338 40 1 2.0826 7.7606 1.3054 41 1 2.7056 10.5313 3.0552 42 1 4.1975 2.1115 0.0109 43 1 5.3845 -0.0293 0.0099 44 1 4.9412 -2.9192 -0.0002 45 1 0.7394 -2.8053 -0.0185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755794650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:05 Heat of formation + Delta-G solvation = 0.388054 kcal Electronic energy + Delta-G solvation = -28195.140882 eV Core-core repulsion = 24213.734116 eV Total energy + Delta-G solvation = -3981.406766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.82723 -41.32866 -39.03403 -37.98664 -36.57785 -35.83793 -34.97007 -33.26883 -32.74979 -31.03470 -29.84957 -28.63627 -27.93054 -26.89150 -25.19702 -24.02597 -23.68495 -22.69389 -22.15368 -20.76842 -19.25984 -19.17948 -18.23973 -17.86316 -17.36098 -17.09875 -16.86690 -16.76394 -16.40681 -16.33175 -15.83471 -15.29238 -15.18307 -14.96181 -14.75122 -14.53945 -14.41544 -14.32357 -14.10714 -13.80668 -13.64221 -13.37288 -13.27139 -12.99615 -12.78861 -12.69463 -12.56437 -12.38092 -12.18035 -12.02122 -11.82109 -11.67801 -11.41589 -11.30989 -11.00290 -10.97724 -10.26040 -9.64261 -9.02193 -8.56169 -7.95423 -5.25404 -0.39644 0.00852 1.24576 1.45977 1.48792 1.51151 1.57117 1.94873 2.01118 2.30827 2.55095 3.18346 3.34090 3.36158 3.49622 3.56740 3.67068 3.74912 3.79895 3.88141 3.99594 4.16609 4.28169 4.29369 4.39167 4.43949 4.46918 4.53235 4.57048 4.65225 4.68475 4.76139 4.92512 4.93604 4.96417 5.02467 5.11781 5.21451 5.42291 5.45183 5.47019 5.55383 6.04625 6.21630 6.25366 6.77937 6.90985 6.95487 7.31732 8.08270 8.30672 9.28095 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027701 B = 0.002207 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.539093 B =12684.814827 C =12916.376208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.142 3.858 3 C -0.163 4.163 4 C 0.568 3.432 5 O -0.567 6.567 6 N -0.591 5.591 7 C 0.076 3.924 8 C 0.097 3.903 9 C 0.104 3.896 10 H 0.063 0.937 11 O -0.561 6.561 12 C 0.123 3.877 13 N -0.742 5.742 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 0.977 3.023 19 H -0.289 1.289 20 H -0.295 1.295 21 H -0.265 1.265 22 C -0.103 4.103 23 C -0.075 4.075 24 C -0.010 4.010 25 C -0.027 4.027 26 N -0.481 5.481 27 C 0.149 3.851 28 N -0.379 5.379 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.384 0.616 38 H 0.024 0.976 39 H 0.042 0.958 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.155 0.845 43 H 0.182 0.818 44 H 0.204 0.796 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 -24.842 -13.850 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 C -0.169 4.169 4 C 0.356 3.644 5 O -0.447 6.447 6 N -0.321 5.321 7 C -0.066 4.066 8 C -0.026 4.026 9 C 0.043 3.957 10 H 0.081 0.919 11 O -0.368 6.368 12 C -0.004 4.004 13 N -0.385 5.385 14 C -0.378 4.378 15 H 0.097 0.903 16 C -0.272 4.272 17 N -0.621 5.621 18 Si 0.806 3.194 19 H -0.216 1.216 20 H -0.222 1.222 21 H -0.190 1.190 22 C -0.124 4.124 23 C -0.094 4.094 24 C -0.118 4.118 25 C -0.179 4.179 26 N -0.195 5.195 27 C -0.126 4.126 28 N -0.052 5.052 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.233 0.767 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.173 0.827 43 H 0.199 0.801 44 H 0.221 0.779 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.071 -25.760 -12.935 28.845 hybrid contribution -0.174 2.051 0.363 2.090 sum 0.896 -23.709 -12.572 26.851 Atomic orbital electron populations 1.21268 0.86046 1.06288 1.05448 1.20323 0.95774 0.82823 0.97243 1.20113 0.94952 0.91493 1.10355 1.18062 0.82078 0.83656 0.80598 1.90794 1.34533 1.80732 1.38679 1.47671 1.33066 1.17225 1.34127 1.22165 0.88182 1.03088 0.93141 1.22182 0.95344 0.83256 1.01832 1.22183 0.83578 0.92663 0.97278 0.91899 1.86585 1.28281 1.84585 1.37302 1.21443 0.95410 0.89252 0.94326 1.42466 1.26687 1.14354 1.54962 1.19676 1.03743 0.92426 1.21999 0.90325 1.25662 0.98392 1.02599 1.00533 1.69859 1.20926 1.35916 1.35435 0.85086 0.77112 0.79077 0.78141 1.21604 1.22152 1.18971 1.22255 0.90406 0.99822 0.99901 1.20741 1.01621 0.87751 0.99322 1.20136 0.82586 0.97856 1.11187 1.23048 0.98898 0.86988 1.08939 1.69992 0.98775 1.33859 1.16843 1.25743 1.01641 0.76065 1.09158 1.43037 1.07819 1.06609 1.47713 0.87979 0.88324 0.88773 0.91482 0.90403 0.88345 0.89566 0.85974 0.76680 0.95821 0.93991 0.79438 0.94048 0.82707 0.80071 0.77921 0.74346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.36 71.24 0.67 -1.40 16 2 C 0.14 2.73 6.82 41.41 0.28 3.01 16 3 C -0.16 -3.39 4.84 -19.12 -0.09 -3.48 16 4 C 0.57 14.25 6.64 86.69 0.58 14.83 16 5 O -0.57 -18.62 14.47 -4.03 -0.06 -18.68 16 6 N -0.59 -12.09 2.84 -850.56 -2.41 -14.50 16 7 C 0.08 0.98 8.77 127.77 1.12 2.11 16 8 C 0.10 2.15 5.07 86.38 0.44 2.58 16 9 C 0.10 3.27 3.30 30.59 0.10 3.37 16 10 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 11 O -0.56 -16.96 12.64 -148.98 -1.88 -18.84 16 12 C 0.12 4.73 5.92 86.38 0.51 5.24 16 13 N -0.74 -38.61 5.49 -343.45 -1.89 -40.50 16 14 C -0.25 -13.98 9.99 84.04 0.84 -13.14 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 17 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 18 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C -0.10 -1.74 8.13 23.80 0.19 -1.54 16 23 C -0.08 -1.09 10.09 22.38 0.23 -0.86 16 24 C -0.01 -0.18 6.78 38.81 0.26 0.08 16 25 C -0.03 -0.48 12.00 84.37 1.01 0.54 16 26 N -0.48 -9.90 11.19 -197.51 -2.21 -12.11 16 27 C 0.15 2.53 12.09 179.91 2.17 4.71 16 28 N -0.38 -7.08 2.94 -336.60 -0.99 -8.07 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.06 7.21 -2.39 -0.02 1.04 16 31 H 0.09 1.99 5.67 -2.39 -0.01 1.98 16 32 H 0.07 0.91 7.16 -2.39 -0.02 0.90 16 33 H 0.08 0.88 6.39 -2.39 -0.02 0.86 16 34 H 0.10 0.84 7.83 -2.39 -0.02 0.82 16 35 H 0.09 2.10 7.49 -2.38 -0.02 2.09 16 36 H 0.12 1.79 7.86 -2.39 -0.02 1.77 16 37 H 0.38 8.49 9.05 -74.06 -0.67 7.82 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.37 21.42 7.54 -92.71 -0.70 20.72 16 41 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.16 2.27 6.69 -2.91 -0.02 2.25 16 43 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.24 2.20 7.59 -2.91 -0.02 2.18 16 Total: -1.00 -81.03 374.10 1.32 -79.71 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.33 Total: 33.45 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 8.78 Total: 11.83 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -7.22 Total: -136.13 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -1.94 Total: -37.53 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -81.03 1.32 -79.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755794650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.096 kcal (2) G-P(sol) polarization free energy of solvation -81.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds