Wall clock time and date at job start Tue Mar 31 2020 16:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31557 * 119.89728 * 2 1 4 4 C 1.33810 * 120.83712 * 180.02562 * 3 2 1 5 5 C 1.39322 * 132.05022 * 179.97438 * 4 3 2 6 6 C 1.39389 * 107.72510 * 180.02562 * 5 4 3 7 7 O 1.22045 * 125.81884 * 180.02562 * 6 5 4 8 8 N 1.34681 * 108.36544 * 359.97438 * 6 5 4 9 9 H 0.96996 * 125.76789 * 179.97438 * 8 6 5 10 10 N 1.37219 * 120.50543 * 0.02562 * 4 3 2 11 11 C 1.35970 * 119.85832 * 359.72585 * 10 4 3 12 12 C 1.50702 * 120.40085 * 180.29432 * 11 10 4 13 13 C 1.35920 * 119.19809 * 0.54321 * 11 10 4 14 14 C 1.50705 * 120.29668 * 179.72910 * 13 11 10 15 15 C 1.50700 * 109.47037 * 269.72396 * 14 13 11 16 16 O 1.21278 * 120.00197 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99660 * 180.02562 * 15 14 13 18 18 C 1.46501 * 120.00108 * 359.97438 * 17 15 14 19 19 C 1.46504 * 119.99772 * 179.97438 * 17 15 14 20 20 H 1.09003 * 109.46918 * 0.02562 * 19 17 15 21 21 C 1.52996 * 109.47158 * 239.99608 * 19 17 15 22 22 C 1.50705 * 109.46856 * 119.99839 * 19 17 15 23 23 H 1.08000 * 120.00220 * 5.48067 * 22 19 17 24 24 C 1.37881 * 119.99984 * 185.48819 * 22 19 17 25 25 N 1.31506 * 120.00020 * 9.56648 * 24 22 19 26 26 Si 1.86794 * 119.99803 * 189.57501 * 24 22 19 27 27 H 1.48503 * 109.47465 * 84.99204 * 26 24 22 28 28 H 1.48501 * 109.47094 * 204.99017 * 26 24 22 29 29 H 1.48505 * 109.47435 * 324.98935 * 26 24 22 30 30 H 1.08995 * 109.47353 * 269.97019 * 1 2 3 31 31 H 1.08998 * 109.47429 * 29.97412 * 1 2 3 32 32 H 1.09003 * 109.46996 * 149.97141 * 1 2 3 33 33 H 1.08004 * 126.13711 * 0.02562 * 5 4 3 34 34 H 1.08995 * 109.47237 * 270.24998 * 12 11 10 35 35 H 1.08998 * 109.46617 * 30.25401 * 12 11 10 36 36 H 1.09002 * 109.47077 * 150.24514 * 12 11 10 37 37 H 1.09001 * 109.46613 * 149.72910 * 14 13 11 38 38 H 1.08993 * 109.47253 * 29.72296 * 14 13 11 39 39 H 1.09000 * 109.46911 * 269.99980 * 18 17 15 40 40 H 1.08998 * 109.47143 * 30.00077 * 18 17 15 41 41 H 1.09001 * 109.46925 * 150.00413 * 18 17 15 42 42 H 1.09003 * 109.47053 * 62.63750 * 21 19 17 43 43 H 1.08999 * 109.46658 * 182.62997 * 21 19 17 44 44 H 1.08996 * 109.47437 * 302.63525 * 21 19 17 45 45 H 0.96996 * 120.00362 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1628 1.1405 0.0000 4 6 3.5007 1.1624 -0.0005 5 6 4.4167 2.2122 -0.0011 6 6 5.6961 1.6589 -0.0021 7 8 6.7445 2.2837 -0.0023 8 7 5.5783 0.3173 -0.0015 9 1 6.3127 -0.3164 -0.0023 10 7 4.2165 -0.0082 -0.0016 11 6 3.5637 -1.2009 0.0035 12 6 4.3376 -2.4940 0.0091 13 6 2.2045 -1.2129 -0.0016 14 6 1.4557 -2.5207 -0.0023 15 6 1.2056 -2.9556 -1.4234 16 8 1.5972 -2.2712 -2.3448 17 7 0.5466 -4.1051 -1.6702 18 6 0.0740 -4.9321 -0.5571 19 6 0.3029 -4.5276 -3.0516 20 1 0.7244 -3.7916 -3.7364 21 6 -1.2037 -4.6439 -3.2912 22 6 0.9542 -5.8656 -3.2900 23 1 1.4191 -6.3935 -2.4705 24 6 0.9568 -6.4156 -4.5543 25 7 0.5629 -5.6987 -5.5841 26 14 1.5195 -8.1791 -4.8045 27 1 0.3815 -9.1013 -4.5601 28 1 2.0054 -8.3509 -6.1972 29 1 2.6191 -8.4873 -3.8551 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5143 33 1 4.1783 3.2656 -0.0009 34 1 4.5281 -2.8078 -1.0172 35 1 5.2859 -2.3475 0.5263 36 1 3.7587 -3.2618 0.5224 37 1 0.5030 -2.3941 0.5119 38 1 2.0477 -3.2786 0.5107 39 1 0.8485 -5.6481 -0.2820 40 1 -0.1523 -4.2953 0.2981 41 1 -0.8256 -5.4682 -0.8592 42 1 -1.6683 -3.6660 -3.1645 43 1 -1.3837 -5.0031 -4.3044 44 1 -1.6323 -5.3453 -2.5754 45 1 0.5643 -6.0857 -6.4735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067050313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:57 Heat of formation + Delta-G solvation = 51.953313 kcal Electronic energy + Delta-G solvation = -29093.266041 eV Core-core repulsion = 25114.095312 eV Total energy + Delta-G solvation = -3979.170729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.84942 -40.00326 -38.87368 -36.77369 -35.75188 -35.21506 -33.13162 -32.69549 -31.16173 -29.75755 -29.53303 -28.58235 -26.68467 -26.21357 -25.28453 -22.85438 -22.53229 -21.51283 -21.05262 -19.25155 -18.53227 -17.70164 -17.05295 -16.80285 -16.62238 -16.30111 -15.51853 -15.17460 -15.04983 -14.54401 -14.37860 -14.26201 -13.95122 -13.75388 -13.64143 -13.39527 -13.08595 -13.00482 -12.80954 -12.72916 -12.47620 -12.43709 -11.89831 -11.80462 -11.78331 -11.60063 -11.12322 -11.03543 -10.85510 -10.42032 -10.31004 -10.28597 -10.21417 -10.09660 -9.52209 -9.36698 -9.13213 -8.52458 -7.79915 -7.54959 -6.20652 -4.26412 0.23732 0.76180 0.88819 2.81024 3.10552 3.17471 3.25561 3.26058 3.26476 3.37695 3.61151 3.75802 3.86981 4.20360 4.29048 4.39316 4.69688 4.76119 4.88464 4.94196 5.08981 5.13194 5.20942 5.24208 5.27324 5.29720 5.43553 5.53035 5.62383 5.69166 5.81156 5.86086 6.07061 6.10077 6.22178 6.51689 6.55542 6.59987 6.83740 6.98521 7.18933 7.37793 7.48891 7.55089 7.78519 8.02470 8.12500 8.33636 8.69729 8.85455 9.39305 10.86597 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.003154 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.937907 B = 8876.357436 C = 9680.646474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.263 3.737 3 N -0.490 5.490 4 C 0.365 3.635 5 C -0.369 4.369 6 C 0.548 3.452 7 O -0.551 6.551 8 N -0.514 5.514 9 H 0.434 0.566 10 N -0.301 5.301 11 C 0.214 3.786 12 C -0.134 4.134 13 C -0.186 4.186 14 C -0.089 4.089 15 C 0.501 3.499 16 O -0.543 6.543 17 N -0.590 5.590 18 C 0.081 3.919 19 C 0.257 3.743 20 H 0.070 0.930 21 C -0.142 4.142 22 C -0.533 4.533 23 H 0.059 0.941 24 C 0.068 3.932 25 N -0.882 5.882 26 Si 0.894 3.106 27 H -0.278 1.278 28 H -0.286 1.286 29 H -0.275 1.275 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.017 0.983 43 H 0.076 0.924 44 H 0.033 0.967 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 3.565 15.826 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 N -0.205 5.205 4 C 0.147 3.853 5 C -0.401 4.401 6 C 0.351 3.649 7 O -0.431 6.431 8 N -0.268 5.268 9 H 0.280 0.720 10 N -0.079 5.079 11 C 0.097 3.903 12 C -0.191 4.191 13 C -0.194 4.194 14 C -0.131 4.131 15 C 0.287 3.713 16 O -0.421 6.421 17 N -0.322 5.322 18 C -0.063 4.063 19 C 0.157 3.843 20 H 0.088 0.912 21 C -0.201 4.201 22 C -0.571 4.571 23 H 0.077 0.923 24 C -0.136 4.136 25 N -0.519 5.519 26 Si 0.722 3.278 27 H -0.204 1.204 28 H -0.212 1.212 29 H -0.200 1.200 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.188 0.812 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.337 5.096 15.099 15.940 hybrid contribution 1.013 -2.348 -0.290 2.574 sum 0.676 2.748 14.810 15.078 Atomic orbital electron populations 1.20972 0.86803 1.05458 1.04056 1.21864 0.97903 0.86769 0.83195 1.68429 1.02583 1.27542 1.21924 1.20551 0.87132 0.84237 0.93429 1.21414 0.88731 0.98654 1.31264 1.16257 0.91120 0.78779 0.78753 1.90979 1.33630 1.61320 1.57199 1.46491 0.93093 1.10071 1.77153 0.71955 1.44412 0.98716 1.07056 1.57680 1.20619 0.91885 0.85638 0.92168 1.21226 1.00019 0.91887 1.05987 1.19362 0.90149 0.97209 1.12632 1.20662 1.01611 0.93078 0.97715 1.20153 0.79440 0.81885 0.89837 1.90711 1.51459 1.54012 1.45920 1.48253 1.54131 1.20290 1.09482 1.21632 1.00602 0.95260 0.88760 1.18970 0.92504 0.96554 0.76309 0.91213 1.22035 0.97869 0.97532 1.02640 1.21233 1.37725 1.03503 0.94643 0.92272 1.24900 0.95108 0.97867 0.95680 1.69955 1.47015 1.35781 0.99177 0.86585 0.78904 0.84873 0.77470 1.20421 1.21188 1.20031 0.88619 0.88957 0.89153 0.81247 0.87405 0.90276 0.87441 0.87175 0.87737 0.93104 0.92771 0.90635 0.96419 0.90521 0.94783 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.41 36.01 0.34 -0.69 16 2 C 0.26 3.21 6.83 -82.08 -0.56 2.65 16 3 N -0.49 -6.94 10.41 -8.38 -0.09 -7.03 16 4 C 0.37 5.41 7.90 -155.44 -1.23 4.19 16 5 C -0.37 -5.63 10.95 -38.75 -0.42 -6.05 16 6 C 0.55 8.67 8.22 -15.87 -0.13 8.54 16 7 O -0.55 -10.37 18.08 4.88 0.09 -10.28 16 8 N -0.51 -6.45 7.08 28.63 0.20 -6.25 16 9 H 0.43 4.04 8.72 -182.67 -1.59 2.45 16 10 N -0.30 -3.95 3.87 -8.43 -0.03 -3.99 16 11 C 0.21 2.48 6.85 -81.59 -0.56 1.93 16 12 C -0.13 -1.14 9.67 36.01 0.35 -0.79 16 13 C -0.19 -2.17 4.36 -104.82 -0.46 -2.63 16 14 C -0.09 -0.92 3.31 -29.03 -0.10 -1.01 16 15 C 0.50 8.20 7.31 -10.99 -0.08 8.12 16 16 O -0.54 -11.53 15.36 5.56 0.09 -11.45 16 17 N -0.59 -10.32 2.75 -175.26 -0.48 -10.80 16 18 C 0.08 1.03 9.43 59.85 0.56 1.60 16 19 C 0.26 5.84 2.50 -69.08 -0.17 5.67 16 20 H 0.07 1.92 6.84 -51.93 -0.36 1.56 16 21 C -0.14 -3.00 9.09 37.16 0.34 -2.66 16 22 C -0.53 -13.16 8.33 -34.44 -0.29 -13.44 16 23 H 0.06 1.42 7.53 -52.49 -0.40 1.03 16 24 C 0.07 1.75 5.18 -17.82 -0.09 1.66 16 25 N -0.88 -24.01 12.16 55.43 0.67 -23.34 16 26 Si 0.89 19.78 29.55 -169.99 -5.02 14.75 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.83 6.45 -51.93 -0.33 0.50 16 33 H 0.17 2.39 8.06 -52.48 -0.42 1.97 16 34 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 36 H 0.11 0.70 5.96 -51.93 -0.31 0.39 16 37 H 0.11 0.80 6.02 -51.93 -0.31 0.48 16 38 H 0.10 0.80 5.91 -51.93 -0.31 0.49 16 39 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.05 0.45 6.44 -51.93 -0.33 0.12 16 41 H 0.07 1.00 6.38 -51.93 -0.33 0.67 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 1.82 6.85 -51.93 -0.36 1.46 16 44 H 0.03 0.64 6.56 -51.93 -0.34 0.30 16 45 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -35.08 368.47 -8.57 -43.65 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.05 Total: 2.11 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -2.50 Total: 7.06 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.27 Total: -51.40 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.17 Total: -21.72 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.08 -8.57 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067050313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.606 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds