Wall clock time and date at job start Tue Mar 31 2020 17:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46815 * 180.02562 * 9 8 6 11 11 C 1.41374 * 128.01147 * 89.99962 * 10 9 8 12 12 C 1.50710 * 126.80110 * 359.94426 * 11 10 9 13 13 N 1.30170 * 106.40074 * 179.97438 * 11 10 9 14 14 O 1.20925 * 111.60416 * 0.02562 * 13 11 10 15 15 C 1.34049 * 111.56324 * 359.75911 * 14 13 11 16 16 C 1.50695 * 126.77659 * 180.28538 * 15 14 13 17 17 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 18 18 C 1.46491 * 126.04623 * 179.87688 * 17 4 3 19 19 C 1.50702 * 109.46957 * 269.71277 * 18 17 4 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 29 29 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 30 30 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 31 31 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 32 32 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 33 33 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 34 34 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 35 35 H 1.09005 * 109.47406 * 299.99990 * 9 8 6 36 36 H 1.08990 * 109.47361 * 60.00544 * 9 8 6 37 37 H 1.08997 * 109.46968 * 89.99593 * 12 11 10 38 38 H 1.08998 * 109.47304 * 210.00199 * 12 11 10 39 39 H 1.09006 * 109.46599 * 329.99905 * 12 11 10 40 40 H 1.09001 * 109.47503 * 270.11942 * 16 15 14 41 41 H 1.09003 * 109.47097 * 30.11257 * 16 15 14 42 42 H 1.08995 * 109.47311 * 150.11364 * 16 15 14 43 43 H 1.09004 * 109.47166 * 149.71543 * 18 17 4 44 44 H 1.08994 * 109.47507 * 29.71250 * 18 17 4 45 45 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 6 6.6315 6.0987 0.0386 11 6 7.3419 6.6121 -1.0707 12 6 7.0276 6.3860 -2.5272 13 7 8.3217 7.3181 -0.5849 14 8 8.3173 7.3131 0.6243 15 6 7.3014 6.5860 1.1103 16 6 6.9709 6.3550 2.5623 17 7 3.6093 -0.6405 0.0013 18 6 4.7870 -1.5116 0.0026 19 6 5.1921 -1.8109 -1.4178 20 1 4.6288 -1.3935 -2.2393 21 6 6.2856 -2.6124 -1.6685 22 7 6.9718 -3.1203 -0.6681 23 14 6.7923 -2.9770 -3.4290 24 1 5.8641 -2.2912 -4.3635 25 1 8.1755 -2.4872 -3.6576 26 1 6.7406 -4.4422 -3.6658 27 7 2.2731 -1.0608 0.0005 28 1 -0.3634 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.9901 2.1596 -0.0009 32 1 5.6359 1.1294 0.0155 33 1 6.4297 3.5415 0.9182 34 1 6.4372 3.5481 -0.8617 35 1 4.8172 5.4259 -0.8609 36 1 4.8102 5.4187 0.9191 37 1 6.3504 7.1648 -2.8778 38 1 7.9498 6.4182 -3.1072 39 1 6.5551 5.4114 -2.6498 40 1 7.4920 5.4656 2.9165 41 1 7.2860 7.2182 3.1485 42 1 5.8957 6.2141 2.6723 43 1 4.5494 -2.4431 0.5166 44 1 5.6079 -1.0120 0.5169 45 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068219650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:52 Heat of formation + Delta-G solvation = 82.509686 kcal Electronic energy + Delta-G solvation = -27858.074436 eV Core-core repulsion = 23880.228731 eV Total energy + Delta-G solvation = -3977.845705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.11621 -40.89120 -39.31494 -36.13116 -34.75654 -34.01106 -33.78554 -32.17936 -31.98483 -29.23502 -28.89942 -28.51566 -27.75870 -26.07823 -25.33712 -22.92541 -21.92840 -20.99076 -20.27668 -19.72265 -19.26601 -17.85963 -17.22929 -16.98041 -16.69199 -16.31120 -15.87238 -15.04450 -14.73428 -14.57491 -14.20080 -14.12825 -13.82245 -13.71408 -13.42409 -13.18221 -12.99457 -12.88937 -12.87050 -12.79267 -12.54043 -12.52688 -12.24646 -12.06208 -11.79977 -11.60180 -11.53394 -11.08899 -10.99074 -10.94007 -10.40963 -10.36930 -10.07979 -9.91943 -9.82180 -9.54849 -9.31565 -8.75890 -7.94376 -7.46683 -6.36904 -4.45301 1.23844 1.96460 2.22104 2.78882 2.92255 3.08635 3.12537 3.21783 3.27525 3.57912 3.76354 3.97888 4.21304 4.21875 4.48849 4.59493 4.75119 4.95230 4.96672 4.96881 5.09344 5.10866 5.23935 5.27913 5.34401 5.34761 5.44328 5.53587 5.63073 5.66758 5.78142 5.83266 6.00606 6.02679 6.14308 6.17229 6.24503 6.40572 6.64118 6.80364 7.01116 7.49030 7.55744 7.59985 7.76370 7.87939 8.08828 8.26891 8.59460 8.68397 9.22570 10.70257 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009474 B = 0.003173 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.809954 B = 8823.546078 C =10668.067267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.301 3.699 5 N -0.640 5.640 6 C 0.520 3.480 7 O -0.516 6.516 8 C -0.132 4.132 9 C -0.024 4.024 10 C -0.199 4.199 11 C 0.026 3.974 12 C -0.079 4.079 13 N -0.369 5.369 14 O 0.095 5.905 15 C -0.029 4.029 16 C -0.076 4.076 17 N -0.345 5.345 18 C 0.256 3.744 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.279 1.279 27 N -0.286 5.286 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.417 0.583 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 18.144 4.303 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.078 3.922 5 N -0.287 5.287 6 C 0.306 3.694 7 O -0.391 6.391 8 C -0.172 4.172 9 C -0.062 4.062 10 C -0.203 4.203 11 C -0.133 4.133 12 C -0.136 4.136 13 N -0.075 5.075 14 O 0.030 5.970 15 C -0.092 4.092 16 C -0.134 4.134 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.578 4.578 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.205 1.205 27 N -0.111 5.111 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.149 17.771 3.808 18.175 hybrid contribution 0.550 -0.276 -0.860 1.058 sum 0.699 17.495 2.947 17.755 Atomic orbital electron populations 1.20017 0.87612 1.02440 1.02022 1.22037 0.96508 0.91077 1.01869 1.21265 0.89059 1.00413 1.22000 1.17961 0.88092 0.83353 1.02789 1.42850 1.08275 1.05729 1.71864 1.20582 0.91460 0.81308 0.76019 1.90641 1.26903 1.73733 1.47802 1.21615 0.96038 0.94084 1.05463 1.19600 0.91868 0.89650 1.05060 1.20951 1.02224 1.05901 0.91205 1.23491 0.93294 0.97638 0.98917 1.20209 1.02832 1.03375 0.87224 1.73844 1.21676 1.21040 0.90957 1.84801 1.41756 1.54710 1.15699 1.24294 0.90260 0.96396 0.98261 1.20382 1.03422 1.03709 0.85849 1.49351 1.06522 1.02227 1.54897 1.19618 0.77821 0.89765 0.98936 1.21379 1.13069 1.32029 0.91361 0.91655 1.24937 0.95697 0.94875 0.98180 1.69925 1.19064 1.32758 1.30990 0.86309 0.78357 0.78486 0.83623 1.19544 1.20632 1.20498 1.77358 0.86158 1.21839 1.25761 0.91387 0.91148 0.91520 0.82132 0.74685 0.88305 0.88175 0.89387 0.89463 0.90093 0.90486 0.89732 0.89205 0.89857 0.88807 0.92574 0.93846 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.53 16 2 C 0.05 0.99 7.21 -82.44 -0.59 0.39 16 3 C -0.30 -5.89 9.58 -39.78 -0.38 -6.27 16 4 C 0.30 6.14 7.66 -153.16 -1.17 4.97 16 5 N -0.64 -10.49 5.41 -11.46 -0.06 -10.56 16 6 C 0.52 7.28 7.79 -10.98 -0.09 7.20 16 7 O -0.52 -8.49 13.11 5.55 0.07 -8.42 16 8 C -0.13 -1.27 5.68 -27.88 -0.16 -1.43 16 9 C -0.02 -0.22 4.83 -27.88 -0.13 -0.35 16 10 C -0.20 -1.94 5.58 -104.42 -0.58 -2.52 16 11 C 0.03 0.28 7.33 -82.10 -0.60 -0.32 16 12 C -0.08 -0.67 10.39 36.01 0.37 -0.30 16 13 N -0.37 -4.59 12.07 33.42 0.40 -4.19 16 14 O 0.09 1.07 11.20 17.15 0.19 1.26 16 15 C -0.03 -0.26 7.49 -35.31 -0.26 -0.53 16 16 C -0.08 -0.42 10.30 36.00 0.37 -0.05 16 17 N -0.34 -7.93 3.60 -61.58 -0.22 -8.16 16 18 C 0.26 6.29 6.01 -5.20 -0.03 6.26 16 19 C -0.54 -14.31 9.39 -34.44 -0.32 -14.63 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 23 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 N -0.29 -6.58 12.56 33.65 0.42 -6.16 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.16 3.08 5.83 -52.49 -0.31 2.77 16 32 H 0.42 6.31 7.96 -40.82 -0.32 5.98 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.09 0.77 7.40 -51.93 -0.38 0.39 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.44 7.44 -51.93 -0.39 0.05 16 43 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.04 1.02 7.49 -51.93 -0.39 0.64 16 45 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -32.75 387.14 -7.36 -40.10 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.41 Total: 4.58 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.31 Total: -6.44 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 1.28 Total: -52.33 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.26 Total: -7.16 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.75 -7.36 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.611 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds