Wall clock time and date at job start Tue Mar 31 2020 17:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30840 * 125.89812 * 2 1 4 4 N 1.40090 * 108.20075 * 180.14394 * 3 2 1 5 5 C 1.46501 * 126.03514 * 179.85642 * 4 3 2 6 6 C 1.50705 * 109.46836 * 269.68912 * 5 4 3 7 7 H 1.07998 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99938 * 179.72444 * 6 5 4 9 9 N 1.31516 * 120.00188 * 180.27322 * 8 6 5 10 10 Si 1.86804 * 120.00085 * 0.27324 * 8 6 5 11 11 H 1.48501 * 109.46886 * 90.00123 * 10 8 6 12 12 H 1.48504 * 109.47199 * 209.99754 * 10 8 6 13 13 H 1.48494 * 109.46925 * 329.99889 * 10 8 6 14 14 C 1.34943 * 107.92642 * 359.59086 * 4 3 2 15 15 C 1.50706 * 126.12506 * 180.26418 * 14 4 3 16 16 C 1.35319 * 107.74681 * 0.23615 * 14 4 3 17 17 C 1.50700 * 126.03814 * 179.97438 * 16 14 4 18 18 C 1.52997 * 109.46910 * 90.00949 * 17 16 14 19 19 C 1.50701 * 109.47447 * 179.97438 * 18 17 16 20 20 O 1.21216 * 119.99539 * 359.97438 * 19 18 17 21 21 O 1.34189 * 120.00554 * 179.97438 * 19 18 17 22 22 C 1.36180 * 117.00392 * 174.71845 * 21 19 18 23 23 C 1.40179 * 126.07963 * 5.65579 * 22 21 19 24 24 N 1.30862 * 108.22055 * 179.97438 * 23 22 21 25 25 N 1.40068 * 108.30587 * 0.02562 * 24 23 22 26 26 C 1.46497 * 126.01635 * 179.97438 * 25 24 23 27 27 C 1.35238 * 107.96198 * 359.75924 * 25 24 23 28 28 H 1.09004 * 109.47131 * 270.30361 * 1 2 3 29 29 H 1.08996 * 109.46788 * 30.30237 * 1 2 3 30 30 H 1.08998 * 109.46990 * 150.30407 * 1 2 3 31 31 H 1.08996 * 109.47558 * 149.69203 * 5 4 3 32 32 H 1.09005 * 109.47249 * 29.68247 * 5 4 3 33 33 H 0.97002 * 120.00278 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47170 * 89.97393 * 15 14 4 35 35 H 1.09004 * 109.46693 * 209.96927 * 15 14 4 36 36 H 1.08992 * 109.46888 * 329.97434 * 15 14 4 37 37 H 1.09001 * 109.46992 * 210.00528 * 17 16 14 38 38 H 1.08994 * 109.47470 * 330.00828 * 17 16 14 39 39 H 1.09001 * 109.46949 * 299.99605 * 18 17 16 40 40 H 1.09001 * 109.47776 * 59.99509 * 18 17 16 41 41 H 1.08001 * 125.89036 * 359.97438 * 23 22 21 42 42 H 1.08997 * 109.47242 * 90.02716 * 26 25 24 43 43 H 1.09002 * 109.47273 * 210.02611 * 26 25 24 44 44 H 1.08998 * 109.47454 * 330.02448 * 26 25 24 45 45 H 1.08001 * 126.16276 * 180.23954 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0033 5 6 4.7900 1.5007 -0.0074 6 6 5.1955 1.7903 -1.4297 7 1 4.6303 1.3704 -2.2486 8 6 6.2851 2.5954 -1.6855 9 7 6.6358 2.8525 -2.9267 10 14 7.2633 3.3211 -0.2691 11 1 8.3548 2.3876 0.1081 12 1 7.8463 4.6220 -0.6854 13 1 6.3664 3.5307 0.8957 14 6 3.6142 -0.7154 0.0038 15 6 4.8351 -1.5989 0.0090 16 6 2.3271 -1.1330 0.0062 17 6 1.8599 -2.5657 0.0133 18 6 1.7019 -3.0434 1.4581 19 6 1.2341 -4.4759 1.4654 20 8 1.0452 -5.0571 0.4185 21 8 1.0265 -5.1082 2.6306 22 6 0.4995 -6.3624 2.5683 23 6 0.2563 -7.0986 1.4005 24 7 -0.2522 -8.2544 1.7438 25 7 -0.3509 -8.2942 3.1404 26 6 -0.8695 -9.4097 3.9359 27 6 0.1212 -7.1233 3.6254 28 1 -0.3633 0.0054 1.0277 29 1 -0.3633 0.8872 -0.5185 30 1 -0.3633 -0.8927 -0.5091 31 1 5.6092 1.0008 0.5093 32 1 4.5562 2.4360 0.5013 33 1 7.4022 3.4193 -3.1067 34 1 5.1293 -1.8061 1.0379 35 1 4.6076 -2.5359 -0.4995 36 1 5.6512 -1.0939 -0.5075 37 1 0.9010 -2.6377 -0.5001 38 1 2.5932 -3.1896 -0.4975 39 1 2.6607 -2.9714 1.9715 40 1 0.9685 -2.4195 1.9691 41 1 0.4545 -6.7687 0.3913 42 1 -0.0530 -10.0859 4.1891 43 1 -1.3197 -9.0250 4.8511 44 1 -1.6218 -9.9481 3.3596 45 1 0.1837 -6.8438 4.6667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179897763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:46 Heat of formation + Delta-G solvation = 77.724273 kcal Electronic energy + Delta-G solvation = -27386.530015 eV Core-core repulsion = 23408.476799 eV Total energy + Delta-G solvation = -3978.053216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.01429 -40.78043 -40.35246 -37.14985 -34.60134 -33.62255 -33.29724 -32.52071 -30.80726 -30.13520 -29.32695 -27.50375 -26.60715 -26.13821 -24.45350 -22.64112 -21.84938 -21.48313 -20.43925 -18.95502 -18.75799 -18.19596 -17.14802 -16.99586 -16.88400 -16.29814 -15.71852 -15.54279 -14.75587 -14.48800 -14.32290 -14.18039 -13.88042 -13.37612 -13.24046 -13.23249 -13.07942 -12.95422 -12.89001 -12.68057 -12.42194 -12.28736 -12.14366 -12.07131 -11.91330 -11.57559 -11.35202 -11.07685 -11.03404 -10.87106 -10.74237 -10.34010 -10.23494 -9.79514 -9.75322 -9.69732 -8.81276 -8.48893 -8.28770 -7.60584 -6.28884 -4.32509 1.35266 1.89686 1.95704 2.50528 2.61925 2.69576 3.11669 3.19670 3.20843 3.28304 3.45170 4.18908 4.22672 4.41311 4.62216 4.69437 4.87532 4.95277 4.96633 5.02621 5.05646 5.17374 5.21056 5.29354 5.30319 5.50870 5.60316 5.74355 5.79763 5.87546 5.89284 5.91053 6.10819 6.17176 6.24305 6.29454 6.36594 6.47411 6.50362 6.58442 6.73196 6.88128 7.25801 7.29005 7.36439 7.69061 7.80825 8.28000 8.54188 8.76364 9.26070 10.83516 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002065 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.492319 B =13557.146105 C =13946.562822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.057 3.943 3 N -0.293 5.293 4 N -0.324 5.324 5 C 0.230 3.770 6 C -0.542 4.542 7 H 0.081 0.919 8 C 0.079 3.921 9 N -0.885 5.885 10 Si 0.873 3.127 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.101 3.899 15 C -0.095 4.095 16 C -0.268 4.268 17 C -0.015 4.015 18 C -0.101 4.101 19 C 0.463 3.537 20 O -0.496 6.496 21 O -0.263 6.263 22 C -0.066 4.066 23 C 0.030 3.970 24 N -0.287 5.287 25 N -0.373 5.373 26 C 0.107 3.893 27 C 0.049 3.951 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.219 0.781 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.535 -20.445 16.291 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 N -0.116 5.116 4 N -0.102 5.102 5 C 0.110 3.890 6 C -0.580 4.580 7 H 0.099 0.901 8 C -0.125 4.125 9 N -0.522 5.522 10 Si 0.698 3.302 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.188 1.188 14 C -0.031 4.031 15 C -0.154 4.154 16 C -0.280 4.280 17 C -0.054 4.054 18 C -0.139 4.139 19 C 0.308 3.692 20 O -0.383 6.383 21 O -0.174 6.174 22 C -0.119 4.119 23 C -0.156 4.156 24 N -0.110 5.110 25 N -0.158 5.158 26 C -0.034 4.034 27 C -0.097 4.097 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.235 0.765 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.754 -20.318 15.535 28.580 hybrid contribution 1.031 0.451 0.897 1.439 sum -11.722 -19.867 16.433 28.322 Atomic orbital electron populations 1.20062 0.87797 1.02694 1.01986 1.21982 0.96230 0.90630 1.01981 1.77302 0.87142 1.22590 1.24556 1.48809 1.05497 1.04015 1.51925 1.19983 0.79374 0.89871 0.99724 1.21160 1.14144 1.32401 0.90311 0.90129 1.24813 0.96640 0.95281 0.95781 1.69872 1.26920 1.36856 1.18542 0.86905 0.80852 0.79588 0.82808 1.19628 1.20464 1.18819 1.20784 0.96235 0.85442 1.00604 1.20461 0.94440 0.98055 1.02414 1.19220 0.91385 0.94748 1.22689 1.19503 1.02246 0.91376 0.92282 1.21573 1.04124 0.86183 1.02012 1.24541 0.74083 0.89999 0.80618 1.90561 1.47902 1.66600 1.33204 1.84450 1.71686 1.25305 1.35942 1.18628 1.11876 0.87455 0.93928 1.25403 0.98379 0.90400 1.01439 1.77484 1.22919 1.21125 0.89460 1.48194 1.49302 1.13182 1.05155 1.21875 1.00144 0.86940 0.94461 1.21541 1.01993 0.87230 0.98966 0.91402 0.91370 0.91075 0.93887 0.93220 0.92087 0.91076 0.90346 0.89807 0.90717 0.90814 0.87482 0.87386 0.76479 0.90541 0.89261 0.89024 0.79815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.26 36.01 0.37 -0.52 16 2 C 0.06 1.01 7.22 -82.40 -0.59 0.42 16 3 N -0.29 -6.42 12.58 33.67 0.42 -6.00 16 4 N -0.32 -7.16 3.60 -58.31 -0.21 -7.36 16 5 C 0.23 5.40 4.89 -5.19 -0.03 5.38 16 6 C -0.54 -15.00 9.94 -34.44 -0.34 -15.34 16 7 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 10 Si 0.87 19.93 27.47 -169.99 -4.67 15.26 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 14 C 0.10 1.87 6.93 -82.26 -0.57 1.30 16 15 C -0.10 -1.44 9.68 36.01 0.35 -1.09 16 16 C -0.27 -4.44 5.35 -105.05 -0.56 -5.00 16 17 C -0.02 -0.20 4.59 -27.88 -0.13 -0.33 16 18 C -0.10 -1.04 5.79 -27.88 -0.16 -1.20 16 19 C 0.46 5.30 7.90 36.01 0.28 5.59 16 20 O -0.50 -6.63 12.48 -19.06 -0.24 -6.87 16 21 O -0.26 -2.96 10.19 -24.21 -0.25 -3.20 16 22 C -0.07 -0.76 6.91 -39.78 -0.27 -1.03 16 23 C 0.03 0.37 10.65 -17.24 -0.18 0.19 16 24 N -0.29 -3.50 12.57 30.69 0.39 -3.11 16 25 N -0.37 -3.32 4.02 -68.01 -0.27 -3.60 16 26 C 0.11 0.42 11.47 59.85 0.69 1.10 16 27 C 0.05 0.42 11.52 -16.98 -0.20 0.23 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.81 7.25 -51.93 -0.38 0.43 16 31 H 0.04 0.93 7.09 -51.93 -0.37 0.56 16 32 H 0.05 1.19 7.19 -51.93 -0.37 0.82 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.02 7.15 -51.93 -0.37 0.65 16 36 H 0.08 1.42 7.72 -51.93 -0.40 1.02 16 37 H 0.07 0.94 7.21 -51.93 -0.37 0.56 16 38 H 0.07 0.95 7.10 -51.93 -0.37 0.58 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.22 2.80 5.54 -52.49 -0.29 2.51 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -35.02 382.00 -6.06 -41.09 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.32 Total: 1.61 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.45 Total: -8.22 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 1.10 Total: -45.43 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.48 Total: -10.07 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.02 -6.06 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179897763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.812 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds