Wall clock time and date at job start Tue Mar 31 2020 17:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35242 * 126.07546 * 2 1 4 4 C 1.40366 * 107.87649 * 179.97438 * 3 2 1 5 5 N 1.40400 * 125.97091 * 179.97438 * 4 3 2 6 6 C 1.35014 * 124.19150 * 5.00123 * 5 4 3 7 7 O 1.21244 * 127.19070 * 2.36055 * 6 5 4 8 8 C 1.51214 * 105.61950 * 182.37801 * 6 5 4 9 9 H 1.09004 * 112.37345 * 112.91610 * 8 6 5 10 10 C 1.53172 * 110.79999 * 238.37502 * 8 6 5 11 11 C 1.53182 * 108.83784 * 164.87482 * 10 8 6 12 12 H 1.09004 * 109.26802 * 56.81563 * 11 10 8 13 13 C 1.52997 * 109.26799 * 176.27463 * 11 10 8 14 14 C 1.52888 * 110.52188 * 296.54593 * 11 10 8 15 15 C 1.53645 * 109.69643 * 62.27604 * 14 11 10 16 16 N 1.46469 * 107.38470 * 308.94444 * 15 14 11 17 17 C 1.33512 * 129.87618 * 232.12501 * 16 15 14 18 18 O 1.21536 * 124.01568 * 349.04241 * 17 16 15 19 19 N 1.31192 * 108.06232 * 0.26682 * 4 3 2 20 20 N 1.34967 * 126.07373 * 179.97438 * 2 1 3 21 21 C 1.46495 * 125.98155 * 0.06235 * 20 2 1 22 22 C 1.50693 * 109.47372 * 89.99892 * 21 20 2 23 23 H 1.08006 * 120.00255 * 0.02562 * 22 21 20 24 24 C 1.37882 * 120.00338 * 180.02562 * 22 21 20 25 25 N 1.31511 * 119.99879 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00188 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47030 * 89.99575 * 26 24 22 28 28 H 1.48496 * 109.47067 * 209.99477 * 26 24 22 29 29 H 1.48499 * 109.47021 * 329.99854 * 26 24 22 30 30 H 1.09007 * 109.46757 * 90.02725 * 1 2 3 31 31 H 1.08998 * 109.47133 * 210.02212 * 1 2 3 32 32 H 1.08999 * 109.47186 * 330.02863 * 1 2 3 33 33 H 1.07999 * 126.06043 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.59840 * 45.02965 * 10 8 6 35 35 H 1.09003 * 109.59671 * 284.72323 * 10 8 6 36 36 H 1.08995 * 109.47117 * 60.00033 * 13 11 10 37 37 H 1.08997 * 109.47577 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.47114 * 300.00381 * 13 11 10 39 39 H 1.09000 * 109.43005 * 182.34257 * 14 11 10 40 40 H 1.09003 * 109.42982 * 302.24943 * 14 11 10 41 41 H 1.08996 * 109.87754 * 68.41263 * 15 14 11 42 42 H 1.09007 * 109.87443 * 189.40245 * 15 14 11 43 43 H 1.09004 * 109.47613 * 210.00007 * 21 20 2 44 44 H 1.08997 * 109.47259 * 329.99626 * 21 20 2 45 45 H 0.97000 * 119.99994 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6368 0.6547 0.0006 5 7 4.7751 1.4766 0.0003 6 6 4.7390 2.8228 0.0967 7 8 3.7579 3.5215 0.2358 8 6 6.1776 3.2770 -0.0054 9 1 6.3715 3.8388 -0.9192 10 6 6.5870 4.0710 1.2389 11 6 8.1144 4.1815 1.2748 12 1 8.4633 4.6442 0.3516 13 6 8.5298 5.0515 2.4628 14 6 8.7487 2.7977 1.4166 15 6 8.3897 1.9359 0.1963 16 7 6.9366 2.0033 0.0252 17 6 6.0423 1.0192 -0.0947 18 8 6.3345 -0.1475 -0.2695 19 7 3.6337 -0.6572 -0.0049 20 7 2.3017 -1.0909 0.0005 21 6 1.8503 -2.4846 -0.0002 22 6 1.6968 -2.9622 -1.4211 23 1 1.9141 -2.2945 -2.2418 24 6 1.2788 -4.2517 -1.6737 25 7 1.0147 -5.0649 -0.6745 26 14 1.0878 -4.8435 -3.4352 27 1 2.3690 -5.4320 -3.9013 28 1 0.0186 -5.8720 -3.4986 29 1 0.7241 -3.6969 -4.3059 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 1.9720 2.1210 0.0004 34 1 6.2366 3.5555 2.1331 35 1 6.1491 5.0683 1.1966 36 1 8.1748 4.5970 3.3877 37 1 9.6164 5.1327 2.4913 38 1 8.0942 6.0449 2.3556 39 1 9.8318 2.9003 1.4821 40 1 8.3744 2.3182 2.3211 41 1 8.8858 2.3266 -0.6921 42 1 8.6962 0.9041 0.3681 43 1 2.5846 -3.1046 0.5142 44 1 0.8913 -2.5562 0.5128 45 1 0.7203 -5.9719 -0.8522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285891521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:17 Heat of formation + Delta-G solvation = 14.461500 kcal Electronic energy + Delta-G solvation = -28951.486512 eV Core-core repulsion = 24970.690017 eV Total energy + Delta-G solvation = -3980.796496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.83153 -42.10960 -39.88083 -39.03398 -37.09574 -35.89003 -34.98676 -33.45106 -32.84414 -32.30437 -29.47746 -28.76606 -28.04364 -26.21890 -25.55450 -24.57071 -23.15974 -22.95485 -21.33579 -20.82646 -20.24198 -18.87906 -18.54052 -18.19835 -17.61895 -17.42042 -16.90400 -16.41401 -16.33478 -15.97962 -15.97486 -15.51005 -15.16485 -14.90997 -14.81727 -14.69990 -14.38038 -14.15332 -14.00564 -13.76683 -13.58343 -13.21148 -12.97338 -12.90191 -12.78294 -12.72990 -12.56570 -12.32849 -12.22581 -12.18591 -12.14876 -11.74927 -11.58513 -11.52121 -11.36042 -11.10030 -10.77865 -10.13889 -9.83495 -9.44396 -8.38189 -6.55023 0.38742 0.57204 0.88448 1.33223 1.35538 1.37297 1.47441 1.65731 2.04796 2.18661 2.32027 2.77170 2.92734 3.34117 3.64786 3.72017 3.81916 3.89255 3.93523 4.03576 4.15198 4.27787 4.42157 4.48529 4.60452 4.63326 4.71921 4.73554 4.79182 4.84751 4.87402 4.88775 4.93939 4.99631 5.04708 5.10586 5.18894 5.29527 5.38829 5.46416 5.47975 5.53895 5.57233 5.74737 5.91403 6.13049 6.18763 6.54561 6.77583 6.93016 7.15584 8.69410 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019991 B = 0.002981 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.318072 B = 9391.613612 C =10215.318185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.099 3.901 3 C -0.287 4.287 4 C 0.254 3.746 5 N -0.504 5.504 6 C 0.527 3.473 7 O -0.470 6.470 8 C 0.108 3.892 9 H 0.177 0.823 10 C -0.108 4.108 11 C -0.083 4.083 12 H 0.104 0.896 13 C -0.145 4.145 14 C -0.129 4.129 15 C 0.142 3.858 16 N -0.607 5.607 17 C 0.689 3.311 18 O -0.561 6.561 19 N -0.326 5.326 20 N -0.339 5.339 21 C 0.274 3.726 22 C -0.555 4.555 23 H 0.048 0.952 24 C 0.023 3.977 25 N -0.917 5.917 26 Si 0.973 3.027 27 H -0.278 1.278 28 H -0.266 1.266 29 H -0.267 1.267 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.173 0.827 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.053 0.947 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.408 24.430 3.915 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.032 4.032 3 C -0.318 4.318 4 C 0.002 3.998 5 N -0.247 5.247 6 C 0.315 3.685 7 O -0.338 6.338 8 C 0.002 3.998 9 H 0.194 0.806 10 C -0.146 4.146 11 C -0.102 4.102 12 H 0.122 0.878 13 C -0.202 4.202 14 C -0.167 4.167 15 C 0.023 3.977 16 N -0.346 5.346 17 C 0.391 3.609 18 O -0.434 6.434 19 N -0.154 5.154 20 N -0.122 5.122 21 C 0.156 3.844 22 C -0.593 4.593 23 H 0.066 0.934 24 C -0.178 4.178 25 N -0.555 5.555 26 Si 0.796 3.204 27 H -0.204 1.204 28 H -0.190 1.190 29 H -0.191 1.191 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.190 0.810 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.097 0.903 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.794 22.745 3.970 26.895 hybrid contribution -0.725 -0.686 -0.648 1.190 sum 13.069 22.058 3.321 25.854 Atomic orbital electron populations 1.20545 0.84198 1.04779 1.04444 1.21818 0.97058 0.85760 0.98532 1.20997 0.88154 1.00366 1.22237 1.19143 0.86942 0.89559 1.04169 1.43812 1.05097 1.09012 1.66829 1.21607 0.93447 0.79459 0.73960 1.90742 1.39104 1.58868 1.45104 1.22809 0.83640 0.87274 1.06056 0.80586 1.21980 0.98393 1.00943 0.93315 1.21085 0.91884 0.95506 1.01688 0.87819 1.21798 1.02211 0.99491 0.96686 1.22147 1.03090 0.95030 0.96395 1.21983 0.72717 1.02282 1.00714 1.47905 1.07814 1.04427 1.74477 1.16113 0.80608 0.85546 0.78652 1.91025 1.80647 1.17984 1.53707 1.77613 0.99717 1.10276 1.27805 1.49105 1.01650 1.08153 1.53256 1.19325 0.95004 0.72023 0.98095 1.21397 1.47758 0.98630 0.91536 0.93351 1.25752 0.93815 0.95774 1.02465 1.69997 1.44888 1.07560 1.33071 0.85337 0.78226 0.78363 0.78454 1.20406 1.18993 1.19139 0.89287 0.91026 0.86738 0.80984 0.92493 0.86947 0.93596 0.91099 0.91479 0.87003 0.92857 0.87136 0.90284 0.96326 0.92039 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.62 10.11 71.23 0.72 -1.90 16 2 C 0.10 4.21 6.93 41.38 0.29 4.49 16 3 C -0.29 -11.74 9.89 22.10 0.22 -11.53 16 4 C 0.25 11.64 7.67 133.24 1.02 12.66 16 5 N -0.50 -18.91 2.87 -598.47 -1.72 -20.62 16 6 C 0.53 14.85 7.56 87.78 0.66 15.51 16 7 O -0.47 -14.35 15.93 -2.92 -0.05 -14.39 16 8 C 0.11 1.82 3.93 44.12 0.17 2.00 16 9 H 0.18 1.63 8.14 -2.39 -0.02 1.61 16 10 C -0.11 -1.24 4.77 30.71 0.15 -1.09 16 11 C -0.08 -0.55 2.59 -10.77 -0.03 -0.58 16 12 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 13 C -0.14 -0.79 9.17 71.98 0.66 -0.13 16 14 C -0.13 -1.17 5.35 30.77 0.16 -1.00 16 15 C 0.14 2.05 7.01 86.60 0.61 2.66 16 16 N -0.61 -13.76 3.03 -814.84 -2.47 -16.22 16 17 C 0.69 25.20 8.34 179.36 1.50 26.69 16 18 O -0.56 -26.48 16.73 -3.83 -0.06 -26.55 16 19 N -0.33 -17.56 11.58 -54.33 -0.63 -18.19 16 20 N -0.34 -17.49 3.59 -338.47 -1.22 -18.71 16 21 C 0.27 15.25 5.99 85.63 0.51 15.77 16 22 C -0.56 -32.54 9.39 25.60 0.24 -32.30 16 23 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 24 C 0.02 1.31 5.46 84.66 0.46 1.77 16 25 N -0.92 -53.38 13.29 21.45 0.28 -53.09 16 26 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 30 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.07 2.37 7.07 -2.39 -0.02 2.35 16 32 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.17 6.16 6.71 -2.91 -0.02 6.14 16 34 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.47 8.03 -2.38 -0.02 1.45 16 43 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.06 3.29 7.04 -2.39 -0.02 3.27 16 45 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -83.32 372.79 4.52 -78.80 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.00 Total: 9.34 kcal Atomic # 6 Polarization: 25.66 SS G_CDS: 7.35 Total: 33.01 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -5.75 Total: -126.83 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.11 Total: -40.94 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -83.32 4.52 -78.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285891521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.264 kcal (2) G-P(sol) polarization free energy of solvation -83.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds