Wall clock time and date at job start Tue Mar 31 2020 16:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99970 * 2 1 4 4 O 1.21280 * 119.99884 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00030 * 179.97438 * 3 2 1 6 6 C 1.52998 * 110.77807 * 61.78535 * 5 3 2 7 7 C 1.55158 * 110.71971 * 298.55005 * 5 3 2 8 8 C 1.54917 * 101.57978 * 277.13658 * 7 5 3 9 9 N 1.47422 * 104.83074 * 322.98980 * 8 7 5 10 10 S 1.65599 * 125.64710 * 204.09161 * 9 8 7 11 11 O 1.42093 * 104.27958 * 206.09796 * 10 9 8 12 12 O 1.42098 * 104.27829 * 333.95920 * 10 9 8 13 13 C 1.81405 * 104.44800 * 90.02721 * 10 9 8 14 14 C 1.52997 * 109.46947 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47377 * 300.00078 * 14 13 10 16 16 C 1.53000 * 109.47501 * 60.00071 * 14 13 10 17 17 C 1.50705 * 109.47074 * 179.97438 * 14 13 10 18 18 H 1.07997 * 119.99898 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99925 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00157 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99765 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47282 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47086 * 120.00252 * 21 19 17 24 24 H 1.48501 * 109.47221 * 239.99868 * 21 19 17 25 25 C 1.47020 * 108.70191 * 24.12901 * 9 8 7 26 26 H 1.09003 * 109.46879 * 59.99895 * 1 2 3 27 27 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47033 * 300.00363 * 1 2 3 29 29 H 0.96997 * 119.99782 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47166 * 298.21338 * 6 5 3 31 31 H 1.08998 * 109.47182 * 58.21410 * 6 5 3 32 32 H 1.09004 * 109.47036 * 178.22053 * 6 5 3 33 33 H 1.08998 * 111.00511 * 159.06190 * 7 5 3 34 34 H 1.08996 * 111.04098 * 35.22523 * 7 5 3 35 35 H 1.08998 * 110.36726 * 81.82993 * 8 7 5 36 36 H 1.09005 * 110.36534 * 204.15515 * 8 7 5 37 37 H 1.08998 * 109.47097 * 299.99702 * 13 10 9 38 38 H 1.08997 * 109.47049 * 60.00398 * 13 10 9 39 39 H 1.08997 * 109.47552 * 59.99948 * 15 14 13 40 40 H 1.09001 * 109.47604 * 180.02562 * 15 14 13 41 41 H 1.09004 * 109.46981 * 300.00257 * 15 14 13 42 42 H 1.09000 * 109.46813 * 59.99658 * 16 14 13 43 43 H 1.08997 * 109.47398 * 179.97438 * 16 14 13 44 44 H 1.08999 * 109.47016 * 300.00008 * 16 14 13 45 45 H 0.96998 * 120.00221 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.88493 * 239.51822 * 25 9 8 47 47 H 1.09003 * 109.87996 * 118.35911 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1892 0.4906 -1.2596 7 6 4.1944 0.4739 1.2757 8 6 4.1276 1.6260 2.3092 9 7 4.4869 2.8366 1.5485 10 16 5.1175 4.2273 2.1893 11 8 4.7243 5.2433 1.2770 12 8 4.6589 4.2329 3.5342 13 6 6.9135 3.9792 2.1302 14 6 7.6176 5.2110 2.7026 15 6 7.2454 6.4422 1.8742 16 6 7.1793 5.4209 4.1534 17 6 9.1097 5.0046 2.6541 18 1 9.5151 4.0868 2.2546 19 6 9.9571 5.9879 3.1189 20 7 9.4634 7.1061 3.6041 21 14 11.8065 5.7317 3.0595 22 1 12.1032 4.4004 2.4724 23 1 12.4262 6.7904 2.2226 24 1 12.3603 5.8011 4.4356 25 6 4.1919 2.6050 0.1270 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9500 -0.8400 0.0004 30 1 3.8638 -0.5495 -1.2825 31 1 3.8123 1.0087 -2.1414 32 1 5.2785 0.5304 -1.2525 33 1 5.2215 0.1405 1.1280 34 1 3.5554 -0.3569 1.5750 35 1 3.1188 1.7164 2.7119 36 1 4.8441 1.4565 3.1130 37 1 7.1788 3.1023 2.7208 38 1 7.2258 3.8293 1.0967 39 1 6.1662 6.5914 1.9097 40 1 7.7473 7.3198 2.2818 41 1 7.5577 6.2927 0.8407 42 1 7.4445 4.5437 4.7436 43 1 7.6812 6.2982 4.5613 44 1 6.1001 5.5700 4.1889 45 1 10.0595 7.7980 3.9307 46 1 5.1029 2.7087 -0.4625 47 1 3.4423 3.3177 -0.2169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451490955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:20 Heat of formation + Delta-G solvation = -106.813709 kcal Electronic energy + Delta-G solvation = -28514.381091 eV Core-core repulsion = 24631.476908 eV Total energy + Delta-G solvation = -3882.904183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69936 -37.79036 -36.48847 -36.24419 -35.22580 -34.93696 -32.88805 -31.64802 -29.71832 -27.28503 -26.75116 -26.17631 -25.69277 -25.21604 -22.67598 -22.44172 -19.90746 -19.42133 -18.55128 -17.57942 -17.15572 -16.24438 -15.99453 -15.77024 -15.34200 -15.29774 -14.78121 -14.75903 -14.09127 -13.80129 -13.64160 -13.38142 -13.09782 -13.06627 -12.88907 -12.65627 -12.61842 -12.51129 -12.48454 -12.03979 -11.69641 -11.52491 -11.40443 -11.22368 -11.07559 -11.04858 -11.00548 -10.88330 -10.67287 -10.34134 -10.25233 -10.08166 -9.94769 -9.63286 -9.55635 -9.43133 -8.86480 -8.56254 -8.39641 -6.02458 -4.14577 0.84949 2.40670 2.88120 3.17754 3.25111 3.33462 3.35828 4.02371 4.24369 4.34282 4.37158 4.51324 4.61536 4.82466 4.90429 5.04425 5.08445 5.19402 5.22452 5.25151 5.42858 5.43259 5.49082 5.53757 5.61290 5.69118 5.70085 5.78883 5.88369 5.94690 6.10304 6.20962 6.40211 6.53734 6.72476 6.82060 6.93759 7.07302 7.15285 7.33603 7.52416 7.68893 7.97501 7.99892 8.11278 8.34228 8.84129 9.50756 10.98890 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.003213 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.653639 B = 8712.633214 C = 9122.172184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.736 5.736 3 C 0.526 3.474 4 O -0.523 6.523 5 C -0.095 4.095 6 C -0.134 4.134 7 C -0.119 4.119 8 C 0.121 3.879 9 N -1.018 6.018 10 S 2.607 3.393 11 O -0.956 6.956 12 O -0.959 6.959 13 C -0.581 4.581 14 C 0.082 3.918 15 C -0.164 4.164 16 C -0.164 4.164 17 C -0.501 4.501 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.883 5.883 21 Si 0.896 3.104 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.136 3.864 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.401 0.599 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.028 0.972 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.262 0.738 46 H 0.074 0.926 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.249 -18.953 -7.957 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.389 5.389 3 C 0.312 3.688 4 O -0.398 6.398 5 C -0.100 4.100 6 C -0.192 4.192 7 C -0.158 4.158 8 C -0.005 4.005 9 N -0.854 5.854 10 S 2.707 3.293 11 O -0.947 6.947 12 O -0.950 6.950 13 C -0.715 4.715 14 C 0.079 3.921 15 C -0.222 4.222 16 C -0.221 4.221 17 C -0.540 4.540 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.010 3.990 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.235 0.765 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.192 -17.187 -7.533 22.938 hybrid contribution 1.749 -1.028 -0.174 2.036 sum -11.442 -18.215 -7.707 22.850 Atomic orbital electron populations 1.21541 0.79542 1.02111 1.02504 1.45754 1.07696 1.08650 1.76753 1.20315 0.89506 0.83614 0.75394 1.90746 1.69882 1.31209 1.47958 1.21831 0.91826 0.98107 0.98200 1.21769 1.02257 0.99995 0.95180 1.22964 1.02641 0.97332 0.92855 1.21903 1.01138 0.83255 0.94185 1.58922 1.79680 1.31626 1.15178 1.05393 0.78403 0.71788 0.73704 1.93540 1.82036 1.54058 1.65028 1.93533 1.80404 1.85129 1.35896 1.30581 1.20912 1.10275 1.09714 1.17939 0.95653 0.86551 0.91939 1.22276 0.98253 1.02545 0.99098 1.22275 0.98037 1.03666 0.98161 1.20980 0.89027 1.02613 1.41412 0.92268 1.24947 0.98830 0.95096 0.94922 1.69813 1.34505 1.06528 1.41283 0.86479 0.85283 0.78146 0.77719 1.19855 1.20954 1.20960 1.21640 1.00729 0.94565 0.82032 0.92217 0.90701 0.92139 0.76532 0.91736 0.91547 0.90510 0.88876 0.89881 0.91660 0.90084 0.86496 0.86455 0.95354 0.88626 0.94461 0.94499 0.88635 0.95373 0.92791 0.90820 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.70 59.85 0.64 1.20 16 2 N -0.74 -5.33 5.43 -67.08 -0.36 -5.69 16 3 C 0.53 5.93 6.37 -10.99 -0.07 5.86 16 4 O -0.52 -8.48 15.43 5.56 0.09 -8.39 16 5 C -0.09 -0.92 0.76 -153.83 -0.12 -1.03 16 6 C -0.13 -0.86 8.44 37.16 0.31 -0.55 16 7 C -0.12 -0.96 6.00 -24.58 -0.15 -1.11 16 8 C 0.12 1.49 6.70 -2.53 -0.02 1.48 16 9 N -1.02 -15.85 3.62 -111.42 -0.40 -16.26 16 10 S 2.61 52.15 4.68 -107.50 -0.50 51.64 16 11 O -0.96 -21.74 15.22 -57.54 -0.88 -22.62 16 12 O -0.96 -21.40 15.22 -57.54 -0.88 -22.27 16 13 C -0.58 -11.62 5.12 37.16 0.19 -11.42 16 14 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 15 C -0.16 -4.14 7.78 37.16 0.29 -3.86 16 16 C -0.16 -4.12 7.77 37.16 0.29 -3.83 16 17 C -0.50 -13.24 8.01 -34.44 -0.28 -13.52 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 20 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 21 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.14 1.85 5.92 -3.07 -0.02 1.84 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.40 1.59 8.21 -40.82 -0.34 1.25 16 30 H 0.06 0.26 7.85 -51.93 -0.41 -0.15 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.08 0.46 7.54 -51.93 -0.39 0.07 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 38 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 39 H 0.03 0.69 5.47 -51.93 -0.28 0.40 16 40 H 0.10 2.59 6.07 -51.93 -0.32 2.27 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 2.58 6.07 -51.93 -0.32 2.26 16 44 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 45 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 46 H 0.07 0.86 7.79 -51.93 -0.40 0.46 16 47 H 0.09 1.45 6.81 -51.93 -0.35 1.10 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -35.94 373.93 -8.60 -44.54 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.70 Total: 2.98 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 0.90 Total: -21.40 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.25 Total: -45.78 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -1.67 Total: -53.28 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 52.15 SS G_CDS: -0.50 Total: 51.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.94 -8.60 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451490955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.271 kcal (2) G-P(sol) polarization free energy of solvation -35.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds