Wall clock time and date at job start Tue Mar 31 2020 16:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99837 * 2 1 4 4 O 1.21287 * 120.00255 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99830 * 180.02562 * 3 2 1 6 6 C 1.53002 * 110.91492 * 297.54644 * 5 3 2 7 7 C 1.55153 * 111.00593 * 61.44981 * 5 3 2 8 8 C 1.54323 * 103.10236 * 82.48413 * 7 5 3 9 9 N 1.47486 * 107.03754 * 22.24109 * 8 7 5 10 10 S 1.65599 * 125.59459 * 181.00579 * 9 8 7 11 11 O 1.42097 * 104.27674 * 26.09633 * 10 9 8 12 12 O 1.42102 * 104.27777 * 153.95182 * 10 9 8 13 13 C 1.81393 * 104.45057 * 270.02297 * 10 9 8 14 14 C 1.52997 * 109.47320 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47004 * 299.99945 * 14 13 10 16 16 C 1.52997 * 109.46850 * 60.00167 * 14 13 10 17 17 C 1.50702 * 109.46943 * 180.02562 * 14 13 10 18 18 H 1.07995 * 120.00144 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99523 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00103 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99916 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47410 * 89.99683 * 21 19 17 23 23 H 1.48500 * 109.47234 * 210.00162 * 21 19 17 24 24 H 1.48506 * 109.46914 * 329.99889 * 21 19 17 25 25 C 1.47428 * 108.75727 * 1.02624 * 9 8 7 26 26 H 1.09000 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47271 * 300.00670 * 1 2 3 28 28 H 1.08994 * 109.46995 * 60.00624 * 1 2 3 29 29 H 0.96994 * 120.00020 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46800 * 182.45323 * 6 5 3 31 31 H 1.09000 * 109.46774 * 302.44916 * 6 5 3 32 32 H 1.08999 * 109.47078 * 62.44716 * 6 5 3 33 33 H 1.09002 * 110.72030 * 200.93680 * 7 5 3 34 34 H 1.09003 * 110.72184 * 324.03330 * 7 5 3 35 35 H 1.09000 * 109.88693 * 141.69901 * 8 7 5 36 36 H 1.09005 * 109.88012 * 262.86516 * 8 7 5 37 37 H 1.09003 * 109.47347 * 300.00466 * 13 10 9 38 38 H 1.09005 * 109.47123 * 59.99571 * 13 10 9 39 39 H 1.09000 * 109.46745 * 60.00177 * 15 14 13 40 40 H 1.09001 * 109.46729 * 179.97438 * 15 14 13 41 41 H 1.08994 * 109.47229 * 299.99843 * 15 14 13 42 42 H 1.09001 * 109.47591 * 60.00322 * 16 14 13 43 43 H 1.09010 * 109.46835 * 180.02562 * 16 14 13 44 44 H 1.08997 * 109.47179 * 299.99683 * 16 14 13 45 45 H 0.97004 * 120.00038 * 179.97438 * 20 19 17 46 46 H 1.09000 * 110.36462 * 217.05803 * 25 9 8 47 47 H 1.08998 * 110.36847 * 94.73011 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1926 0.5059 1.2662 7 6 4.2016 0.4752 -1.2732 8 6 4.1430 1.5946 -2.3339 9 7 4.1292 2.8781 -1.6074 10 16 4.0470 4.3786 -2.3031 11 8 3.3951 4.1536 -3.5455 12 8 3.4555 5.1966 -1.3029 13 6 5.7784 4.8498 -2.5688 14 6 5.8365 6.2352 -3.2154 15 6 5.1050 6.2021 -4.5589 16 6 5.1657 7.2563 -2.2944 17 6 7.2749 6.6263 -3.4367 18 1 8.0683 5.9542 -3.1450 19 6 7.5780 7.8423 -4.0117 20 7 6.6118 8.6610 -4.3665 21 14 9.3610 8.3276 -4.2855 22 1 9.7997 7.8647 -5.6266 23 1 9.4900 9.8047 -4.2050 24 1 10.2108 7.6989 -3.2424 25 6 4.2011 2.6046 -0.1605 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 5.2813 0.5575 1.2621 31 1 3.8075 1.0267 2.1430 32 1 3.8783 -0.5373 1.2961 33 1 5.2288 0.1462 -1.1160 34 1 3.5694 -0.3641 -1.5631 35 1 5.0199 1.5403 -2.9791 36 1 3.2354 1.4941 -2.9292 37 1 6.2997 4.8729 -1.6118 38 1 6.2563 4.1225 -3.2253 39 1 4.0646 5.9190 -4.3991 40 1 5.1460 7.1892 -5.0193 41 1 5.5829 5.4746 -5.2149 42 1 5.6868 7.2800 -1.3374 43 1 5.2066 8.2433 -2.7553 44 1 4.1253 6.9732 -2.1348 45 1 6.8251 9.5166 -4.7707 46 1 3.5832 3.3134 0.3907 47 1 5.2342 2.6527 0.1838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451490956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:23 Heat of formation + Delta-G solvation = -106.388276 kcal Electronic energy + Delta-G solvation = -28652.747101 eV Core-core repulsion = 24769.861366 eV Total energy + Delta-G solvation = -3882.885735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60003 -37.71389 -36.42968 -36.21462 -35.16293 -34.84487 -32.84571 -31.62660 -29.71069 -27.24483 -26.72903 -26.15611 -25.66820 -25.19497 -22.70785 -22.30592 -19.86922 -19.38950 -18.49995 -17.58148 -17.07200 -16.14418 -15.93293 -15.77293 -15.29705 -15.19135 -14.76106 -14.73631 -14.06676 -13.76438 -13.70981 -13.23175 -13.15153 -12.95162 -12.87886 -12.69323 -12.54239 -12.50668 -12.45725 -12.00418 -11.56364 -11.51920 -11.39664 -11.21061 -11.04922 -11.02180 -10.96661 -10.86566 -10.63780 -10.33406 -10.21679 -10.05379 -9.85040 -9.60813 -9.52113 -9.34728 -8.85453 -8.54833 -8.37407 -6.00399 -4.12539 0.89726 2.50309 2.95344 3.20549 3.27260 3.34380 3.36418 4.03806 4.28284 4.36718 4.38357 4.55640 4.68719 4.86369 4.95319 5.01522 5.11040 5.23823 5.25419 5.27147 5.42162 5.47789 5.53672 5.55376 5.63789 5.70875 5.73096 5.78643 5.87405 5.90225 6.15419 6.22729 6.42797 6.57845 6.74939 6.84600 6.96488 7.09956 7.23133 7.35910 7.54871 7.70623 8.01931 8.07642 8.13405 8.36372 8.85873 9.52568 11.00900 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026153 B = 0.003276 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.382873 B = 8544.495614 C = 8898.398246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.738 5.738 3 C 0.525 3.475 4 O -0.517 6.517 5 C -0.096 4.096 6 C -0.133 4.133 7 C -0.115 4.115 8 C 0.118 3.882 9 N -1.017 6.017 10 S 2.609 3.391 11 O -0.961 6.961 12 O -0.953 6.953 13 C -0.583 4.583 14 C 0.082 3.918 15 C -0.163 4.163 16 C -0.164 4.164 17 C -0.502 4.502 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.883 5.883 21 Si 0.896 3.104 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.137 3.863 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.399 0.601 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.028 0.972 45 H 0.262 0.738 46 H 0.096 0.904 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -21.901 9.641 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.391 5.391 3 C 0.310 3.690 4 O -0.390 6.390 5 C -0.101 4.101 6 C -0.191 4.191 7 C -0.154 4.154 8 C -0.008 4.008 9 N -0.853 5.853 10 S 2.709 3.291 11 O -0.951 6.951 12 O -0.943 6.943 13 C -0.717 4.717 14 C 0.079 3.921 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.541 4.541 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.200 1.200 25 C 0.011 3.989 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.233 0.767 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.609 -20.398 9.328 23.383 hybrid contribution 1.879 -0.390 -0.177 1.927 sum -4.730 -20.788 9.150 23.200 Atomic orbital electron populations 1.21533 0.79589 1.02012 1.02552 1.45752 1.07661 1.08597 1.77056 1.20282 0.89379 0.83671 0.75667 1.90790 1.69834 1.31093 1.47314 1.21993 0.92018 0.98402 0.97696 1.21707 1.02050 1.00135 0.95179 1.22770 1.02401 0.97396 0.92830 1.21732 1.02159 0.82431 0.94436 1.58976 1.90980 1.21411 1.13928 1.05333 0.78925 0.71269 0.73617 1.93520 1.73373 1.83873 1.44351 1.93544 1.75503 1.65623 1.59637 1.30603 1.20929 1.10314 1.09807 1.17932 0.97793 0.84758 0.91580 1.22273 0.96433 1.04328 0.99077 1.22271 0.96670 1.04458 0.98735 1.20947 0.90137 1.02412 1.40606 0.92328 1.24946 0.97333 0.96281 0.95216 1.69807 1.31090 1.09734 1.41514 0.86534 0.84876 0.77693 0.78506 1.20671 1.21124 1.19967 1.21899 1.00603 0.94547 0.81863 0.90769 0.92232 0.92130 0.76697 0.90649 0.91535 0.91761 0.89103 0.90097 0.91077 0.91267 0.86483 0.86573 0.95385 0.88640 0.94527 0.94459 0.88658 0.95337 0.92750 0.88534 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.00 5.45 -67.07 -0.37 -6.36 16 3 C 0.52 6.42 6.40 -10.98 -0.07 6.35 16 4 O -0.52 -9.14 15.72 5.55 0.09 -9.05 16 5 C -0.10 -0.94 0.79 -153.51 -0.12 -1.06 16 6 C -0.13 -0.82 8.61 37.16 0.32 -0.50 16 7 C -0.12 -0.92 5.89 -24.90 -0.15 -1.06 16 8 C 0.12 1.45 6.78 -2.81 -0.02 1.43 16 9 N -1.02 -16.05 3.61 -111.06 -0.40 -16.45 16 10 S 2.61 53.72 4.68 -107.50 -0.50 53.22 16 11 O -0.96 -22.03 15.22 -57.54 -0.88 -22.91 16 12 O -0.95 -22.32 14.90 -57.54 -0.86 -23.17 16 13 C -0.58 -11.98 5.12 37.16 0.19 -11.79 16 14 C 0.08 2.06 0.52 -155.66 -0.08 1.97 16 15 C -0.16 -4.18 7.77 37.16 0.29 -3.89 16 16 C -0.16 -4.21 7.78 37.16 0.29 -3.92 16 17 C -0.50 -13.47 8.01 -34.44 -0.28 -13.74 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.88 -24.61 9.35 55.43 0.52 -24.09 16 21 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.14 1.82 5.70 -2.52 -0.01 1.81 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.40 1.83 8.30 -40.82 -0.34 1.50 16 30 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.25 7.93 -51.93 -0.41 -0.16 16 33 H 0.09 0.53 8.04 -51.93 -0.42 0.11 16 34 H 0.08 0.47 7.55 -51.93 -0.39 0.08 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.12 2.18 8.14 -51.92 -0.42 1.76 16 38 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 39 H 0.03 0.69 5.46 -51.93 -0.28 0.41 16 40 H 0.09 2.61 6.07 -51.93 -0.32 2.30 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 2.61 6.07 -51.92 -0.32 2.30 16 44 H 0.03 0.71 5.46 -51.93 -0.28 0.42 16 45 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.10 1.54 6.89 -51.93 -0.36 1.18 16 47 H 0.07 0.78 8.00 -51.93 -0.42 0.37 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -36.86 374.37 -8.59 -45.45 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.72 Total: 3.33 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 0.91 Total: -21.47 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.25 Total: -46.90 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -1.65 Total: -55.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 53.72 SS G_CDS: -0.50 Total: 53.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.86 -8.59 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451490956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.939 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds