Wall clock time and date at job start Tue Mar 31 2020 17:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00383 * 2 1 4 4 N 1.46498 * 109.47186 * 124.99847 * 3 2 1 5 5 C 1.34780 * 119.99863 * 82.96746 * 4 3 2 6 6 O 1.21366 * 119.99901 * 185.25458 * 5 4 3 7 7 C 1.49306 * 119.99835 * 5.24858 * 5 4 3 8 8 O 1.21394 * 120.00412 * 354.24576 * 7 5 4 9 9 N 1.34784 * 120.00105 * 174.23525 * 7 5 4 10 10 C 1.39195 * 120.00194 * 180.02562 * 9 7 5 11 11 C 1.36212 * 126.27085 * 359.69220 * 10 9 7 12 12 C 1.39697 * 107.85536 * 179.90257 * 11 10 9 13 13 C 1.50697 * 125.76836 * 180.14149 * 12 11 10 14 14 N 1.30850 * 108.46071 * 0.36543 * 12 11 10 15 15 N 1.35857 * 126.27145 * 180.02562 * 10 9 7 16 16 C 1.46500 * 126.09591 * 359.93952 * 15 10 9 17 17 C 1.50696 * 109.46960 * 90.00366 * 16 15 10 18 18 H 1.07999 * 120.00172 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00355 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99730 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00562 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47137 * 59.99635 * 21 19 17 23 23 H 1.48498 * 109.47542 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47055 * 299.99984 * 21 19 17 25 25 C 1.46495 * 120.00331 * 262.96335 * 4 3 2 26 26 C 1.52994 * 117.50067 * 196.55392 * 25 4 3 27 27 C 1.52994 * 117.49973 * 127.89219 * 25 4 3 28 28 H 1.07998 * 120.00483 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99835 * 359.72254 * 1 2 3 30 30 H 1.08001 * 119.99653 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47242 * 245.00231 * 3 2 1 32 32 H 1.08999 * 109.46572 * 4.99693 * 3 2 1 33 33 H 0.96998 * 119.99262 * 0.02562 * 9 7 5 34 34 H 1.07996 * 126.07341 * 0.02872 * 11 10 9 35 35 H 1.09004 * 109.47463 * 270.23652 * 13 12 11 36 36 H 1.09002 * 109.47534 * 30.23563 * 13 12 11 37 37 H 1.09005 * 109.47490 * 150.23996 * 13 12 11 38 38 H 1.08999 * 109.47064 * 210.00500 * 16 15 10 39 39 H 1.09002 * 109.47523 * 330.00562 * 16 15 10 40 40 H 0.96995 * 120.00141 * 180.02562 * 20 19 17 41 41 H 1.08998 * 115.54698 * 342.22488 * 25 4 3 42 42 H 1.09000 * 117.49917 * 359.97438 * 26 25 4 43 43 H 1.09003 * 117.49911 * 145.02370 * 26 25 4 44 44 H 1.09000 * 117.50002 * 214.98369 * 27 25 4 45 45 H 1.09007 * 117.50037 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.1998 0.7392 1.0264 6 8 4.9319 0.6779 1.9925 7 6 4.6350 0.1582 -0.2782 8 8 3.8642 0.1255 -1.2155 9 7 5.8838 -0.3300 -0.4155 10 6 6.2897 -0.8712 -1.6320 11 6 5.5328 -0.9771 -2.7595 12 6 6.3186 -1.5738 -3.7484 13 6 5.8797 -1.8790 -5.1574 14 7 7.4987 -1.8273 -3.2431 15 7 7.5114 -1.3964 -1.9104 16 6 8.6408 -1.4937 -0.9824 17 6 8.5737 -2.8064 -0.2454 18 1 7.7698 -3.4988 -0.4477 19 6 9.5378 -3.1232 0.6879 20 7 10.5164 -2.2799 0.9346 21 14 9.4550 -4.7507 1.6010 22 1 9.5183 -5.8691 0.6260 23 1 10.5998 -4.8494 2.5417 24 1 8.1814 -4.8278 2.3606 25 6 2.6133 2.0027 2.3769 26 6 3.7297 2.3403 3.3671 27 6 2.7478 1.2077 3.6771 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5400 0.9353 0.0045 30 1 1.8499 -0.9353 0.0004 31 1 2.6213 1.4025 -0.9314 32 1 1.3586 2.1315 0.0895 33 1 6.4996 -0.3041 0.3335 34 1 4.5080 -0.6550 -2.8700 35 1 5.4458 -2.8782 -5.1945 36 1 5.1353 -1.1478 -5.4725 37 1 6.7405 -1.8318 -5.8245 38 1 9.5754 -1.4377 -1.5405 39 1 8.5951 -0.6726 -0.2670 40 1 11.1949 -2.5029 1.5909 41 1 1.7813 2.7025 2.2986 42 1 4.7473 2.0628 3.0920 43 1 3.6320 3.2620 3.9406 44 1 2.0045 1.3848 4.4545 45 1 3.1190 0.1853 3.6059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527445295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:32 Heat of formation + Delta-G solvation = 89.269811 kcal Electronic energy + Delta-G solvation = -28844.561679 eV Core-core repulsion = 24867.009115 eV Total energy + Delta-G solvation = -3977.552564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43404 -40.49744 -38.84658 -37.04437 -35.59408 -34.73761 -33.79440 -32.56258 -32.08463 -29.28873 -28.54256 -26.50334 -26.05535 -25.39122 -23.11911 -22.56556 -22.41304 -20.55937 -20.23864 -19.81421 -18.97892 -17.70707 -16.95536 -16.64589 -16.50206 -16.16475 -15.90581 -15.35116 -15.02122 -14.77462 -14.53903 -14.18751 -14.09404 -13.79769 -13.55995 -13.24495 -12.94257 -12.79637 -12.58471 -12.34269 -12.10285 -11.91014 -11.86649 -11.61115 -11.55998 -11.13804 -11.08739 -10.89115 -10.80880 -10.59255 -10.55465 -10.32119 -9.84205 -9.80064 -9.61684 -9.21460 -8.69295 -8.68934 -7.98795 -7.57919 -6.31236 -4.39974 1.17247 1.83585 2.22872 2.58169 3.10233 3.18721 3.21540 3.25411 3.29698 3.52149 3.66421 3.77215 4.18889 4.27304 4.61485 4.67371 4.77096 4.86811 4.95484 5.02228 5.18865 5.28317 5.34881 5.49068 5.59789 5.60102 5.73878 5.84056 5.98612 6.06359 6.07490 6.11185 6.14849 6.29221 6.38936 6.46667 6.50780 6.62072 6.80463 6.84555 7.00167 7.31235 7.44557 7.51563 7.62950 7.79492 7.81056 8.06750 8.55108 8.68133 9.27684 10.76170 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.004161 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.408497 B = 6728.207357 C = 8718.350091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C 0.120 3.880 4 N -0.552 5.552 5 C 0.514 3.486 6 O -0.502 6.502 7 C 0.511 3.489 8 O -0.490 6.490 9 N -0.606 5.606 10 C 0.293 3.707 11 C -0.286 4.286 12 C 0.049 3.951 13 C -0.062 4.062 14 N -0.278 5.278 15 N -0.340 5.340 16 C 0.256 3.744 17 C -0.543 4.543 18 H 0.064 0.936 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.907 3.093 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.066 3.934 26 C -0.190 4.190 27 C -0.183 4.183 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.428 0.572 34 H 0.163 0.837 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.270 0.730 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.397 9.854 -0.075 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.170 4.170 3 C 0.000 4.000 4 N -0.284 5.284 5 C 0.297 3.703 6 O -0.377 6.377 7 C 0.292 3.708 8 O -0.364 6.364 9 N -0.253 5.253 10 C 0.071 3.929 11 C -0.318 4.318 12 C -0.115 4.115 13 C -0.121 4.121 14 N -0.103 5.103 15 N -0.126 5.126 16 C 0.138 3.862 17 C -0.582 4.582 18 H 0.082 0.918 19 C -0.135 4.135 20 N -0.526 5.526 21 Si 0.733 3.267 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.038 4.038 26 C -0.228 4.228 27 C -0.222 4.222 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.099 0.901 33 H 0.267 0.733 34 H 0.181 0.819 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.098 9.379 -0.195 19.502 hybrid contribution -0.418 -0.672 1.331 1.548 sum -17.516 8.707 1.136 19.593 Atomic orbital electron populations 1.23784 0.95625 1.01803 1.01363 1.23206 0.95965 0.98843 0.98961 1.21394 0.92470 0.95714 0.90471 1.47118 1.14370 1.52419 1.14447 1.19892 0.82242 0.79803 0.88404 1.90682 1.53859 1.55303 1.37875 1.19932 0.81942 0.80003 0.88925 1.90605 1.51531 1.53827 1.40478 1.42319 1.14077 1.56073 1.12851 1.17974 0.88755 0.99432 0.86747 1.21274 1.02539 1.16592 0.91399 1.22019 0.92186 1.00181 0.97147 1.20029 1.00976 1.01643 0.89470 1.77370 1.20623 1.22133 0.90181 1.49592 1.09781 1.44002 1.09254 1.19682 0.82278 0.98431 0.85800 1.21268 1.11959 1.02717 1.22207 0.91758 1.24923 0.94562 0.97715 0.96339 1.69902 1.13051 1.35900 1.33736 0.86403 0.77825 0.83039 0.79391 1.19873 1.20839 1.19938 1.21846 1.01695 1.00048 0.80166 1.23861 0.99262 0.99239 1.00393 1.23273 1.02776 0.98322 0.97804 0.88391 0.88631 0.87247 0.85389 0.90112 0.73333 0.81938 0.91261 0.91088 0.91485 0.92367 0.93660 0.92060 0.84862 0.84539 0.88839 0.88416 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 14.32 29.01 0.42 -1.18 16 2 C -0.15 -1.57 8.98 -36.03 -0.32 -1.89 16 3 C 0.12 1.18 5.50 -5.20 -0.03 1.16 16 4 N -0.55 -6.32 2.84 -168.04 -0.48 -6.80 16 5 C 0.51 7.39 7.46 -11.65 -0.09 7.30 16 6 O -0.50 -8.13 12.23 5.48 0.07 -8.06 16 7 C 0.51 8.09 7.74 -11.65 -0.09 8.00 16 8 O -0.49 -7.61 9.41 5.46 0.05 -7.56 16 9 N -0.61 -11.04 5.40 -11.80 -0.06 -11.10 16 10 C 0.29 6.08 7.68 -152.86 -1.17 4.91 16 11 C -0.29 -5.53 9.58 -39.77 -0.38 -5.91 16 12 C 0.05 0.95 7.20 -82.47 -0.59 0.36 16 13 C -0.06 -0.88 10.44 36.00 0.38 -0.50 16 14 N -0.28 -6.34 12.56 33.64 0.42 -5.92 16 15 N -0.34 -7.95 3.62 -61.47 -0.22 -8.17 16 16 C 0.26 6.47 6.02 -5.20 -0.03 6.44 16 17 C -0.54 -14.85 9.39 -34.44 -0.32 -15.17 16 18 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 20 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 21 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.07 0.64 6.61 -67.94 -0.45 0.19 16 26 C -0.19 -2.03 9.63 -26.70 -0.26 -2.28 16 27 C -0.18 -1.89 9.88 -26.70 -0.26 -2.16 16 28 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.10 0.64 7.84 -52.48 -0.41 0.23 16 30 H 0.11 1.36 7.84 -52.49 -0.41 0.95 16 31 H 0.13 1.42 5.32 -51.95 -0.28 1.15 16 32 H 0.08 0.58 7.59 -51.93 -0.39 0.19 16 33 H 0.43 7.93 7.47 -40.82 -0.31 7.62 16 34 H 0.16 2.90 5.83 -52.49 -0.31 2.60 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.05 1.13 7.52 -51.93 -0.39 0.74 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 0.91 8.03 -51.93 -0.42 0.49 16 42 H 0.14 1.85 5.20 -52.17 -0.27 1.58 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.10 1.26 7.61 -51.93 -0.39 0.86 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -30.36 379.39 -8.18 -38.54 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.08 Total: 10.19 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -3.31 Total: 1.04 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.39 Total: -56.05 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.12 Total: -15.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.36 -8.18 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527445295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.815 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds