Wall clock time and date at job start Tue Mar 31 2020 17:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39696 * 125.77009 * 2 1 4 4 C 1.36219 * 107.85985 * 179.97438 * 3 2 1 5 5 N 1.39187 * 126.27412 * 180.02562 * 4 3 2 6 6 C 1.34785 * 120.00020 * 359.97388 * 5 4 3 7 7 O 1.21393 * 119.99490 * 0.02562 * 6 5 4 8 8 C 1.49307 * 119.99884 * 180.02562 * 6 5 4 9 9 O 1.21357 * 120.00080 * 353.80961 * 8 6 5 10 10 N 1.34781 * 119.99588 * 173.81006 * 8 6 5 11 11 C 1.47005 * 121.37533 * 1.98458 * 10 8 6 12 12 C 1.50320 * 109.16641 * 222.94826 * 11 10 8 13 13 C 1.29453 * 123.65563 * 349.02640 * 12 11 10 14 14 C 1.50697 * 117.69712 * 180.83362 * 13 12 11 15 15 C 1.49973 * 124.60742 * 0.85707 * 13 12 11 16 16 C 1.47336 * 121.37612 * 181.70658 * 10 8 6 17 17 N 1.35859 * 107.45456 * 359.97438 * 4 3 2 18 18 C 1.46500 * 126.09831 * 180.26224 * 17 4 3 19 19 C 1.50703 * 109.47257 * 269.71935 * 18 17 4 20 20 H 1.08001 * 120.00154 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99716 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46897 * 59.99860 * 23 21 19 25 25 H 1.48499 * 109.47175 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46867 * 300.00108 * 23 21 19 27 27 N 1.30854 * 125.77377 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47178 * 269.99888 * 1 2 3 29 29 H 1.09003 * 109.47017 * 30.00589 * 1 2 3 30 30 H 1.09009 * 109.47040 * 150.00061 * 1 2 3 31 31 H 1.08000 * 126.06743 * 359.97438 * 3 2 1 32 32 H 0.97003 * 120.00686 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.52572 * 342.86178 * 11 10 8 34 34 H 1.09002 * 109.51788 * 103.04284 * 11 10 8 35 35 H 1.08003 * 118.17306 * 169.04725 * 12 11 10 36 36 H 1.08993 * 109.47215 * 0.02562 * 14 13 12 37 37 H 1.09005 * 109.46647 * 120.00069 * 14 13 12 38 38 H 1.09003 * 109.47190 * 239.99484 * 14 13 12 39 39 H 1.08996 * 109.31193 * 101.28944 * 15 13 12 40 40 H 1.08999 * 109.31234 * 220.72002 * 15 13 12 41 41 H 1.08996 * 109.78104 * 237.81341 * 16 10 8 42 42 H 1.09010 * 109.77666 * 358.61759 * 16 10 8 43 43 H 1.09006 * 109.46909 * 29.71261 * 18 17 4 44 44 H 1.08989 * 109.47194 * 149.71470 * 18 17 4 45 45 H 0.97006 * 119.99856 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3235 1.1335 0.0000 4 6 3.6197 0.7145 0.0006 5 7 4.7484 1.5290 0.0013 6 6 4.6118 2.8699 0.0009 7 8 3.5044 3.3672 0.0004 8 6 5.8226 3.7436 0.0011 9 8 6.9260 3.2515 0.1149 10 7 5.6900 5.0789 -0.1252 11 6 4.3662 5.7109 -0.2216 12 6 4.4007 6.7684 -1.2894 13 6 5.4905 7.1895 -1.8470 14 6 5.3709 8.2697 -2.8910 15 6 6.8635 6.6778 -1.5276 16 6 6.8656 5.9661 -0.1661 17 7 3.6089 -0.6440 0.0015 18 6 4.7857 -1.5165 0.0078 19 6 5.1919 -1.8223 -1.4109 20 1 4.6295 -1.4085 -2.2348 21 6 6.2816 -2.6304 -1.6569 22 7 6.9668 -3.1339 -0.6536 23 14 6.7847 -3.0101 -3.4154 24 1 7.1097 -1.7447 -4.1214 25 1 7.9784 -3.8934 -3.4090 26 1 5.6664 -3.6934 -4.1136 27 7 2.2719 -1.0617 0.0005 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 1.9869 2.1596 -0.0004 32 1 5.6333 1.1318 0.0020 33 1 3.6209 4.9580 -0.4785 34 1 4.1098 6.1670 0.7346 35 1 3.4642 7.2011 -1.6090 36 1 4.3223 8.5395 -3.0162 37 1 5.9358 9.1461 -2.5733 38 1 5.7683 7.9051 -3.8383 39 1 7.1771 5.9788 -2.3028 40 1 7.5617 7.5143 -1.4964 41 1 6.8017 6.7004 0.6369 42 1 7.7762 5.3770 -0.0566 43 1 5.6067 -1.0155 0.5208 44 1 4.5466 -2.4453 0.5255 45 1 7.7333 -3.7027 -0.8268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535268621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:24 Heat of formation + Delta-G solvation = 42.163495 kcal Electronic energy + Delta-G solvation = -28507.412081 eV Core-core repulsion = 24527.816834 eV Total energy + Delta-G solvation = -3979.595247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35660 -40.40151 -38.81989 -37.89897 -35.21759 -34.14540 -33.72123 -32.09293 -31.43339 -29.33646 -28.92486 -28.41387 -26.08524 -25.53968 -24.27613 -23.33103 -22.69387 -21.00937 -19.90739 -19.53991 -18.15718 -17.09983 -17.07750 -16.76624 -16.39743 -16.09096 -15.70224 -15.10569 -14.91452 -14.74158 -14.39461 -14.32972 -14.16816 -13.76112 -13.62117 -13.22009 -13.06498 -12.88769 -12.79138 -12.55806 -12.26059 -12.09933 -12.03837 -11.93454 -11.84058 -11.54252 -11.18730 -11.07872 -11.01388 -10.85117 -10.57695 -10.32375 -9.84603 -9.83186 -9.44182 -9.09316 -8.77678 -8.69418 -7.99312 -7.58969 -6.31144 -4.40027 1.19371 1.94194 2.04151 2.59776 3.10290 3.19324 3.21369 3.25312 3.29583 3.52482 3.69447 4.19336 4.27167 4.43966 4.51000 4.78829 4.89076 5.02225 5.17267 5.23187 5.27913 5.28209 5.35600 5.43763 5.49491 5.56058 5.64025 5.68701 5.72723 5.97775 6.02255 6.06349 6.11633 6.17221 6.22718 6.35335 6.51427 6.68052 6.81187 6.96381 7.00644 7.30389 7.44019 7.51798 7.62977 7.78810 7.80667 8.05939 8.54725 8.68064 9.27609 10.76252 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003595 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.281507 B = 7786.390080 C = 9461.431295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.286 4.286 4 C 0.292 3.708 5 N -0.604 5.604 6 C 0.517 3.483 7 O -0.492 6.492 8 C 0.519 3.481 9 O -0.511 6.511 10 N -0.584 5.584 11 C 0.096 3.904 12 C -0.168 4.168 13 C -0.129 4.129 14 C -0.120 4.120 15 C -0.098 4.098 16 C 0.109 3.891 17 N -0.340 5.340 18 C 0.255 3.745 19 C -0.544 4.544 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.888 5.888 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.273 1.273 27 N -0.277 5.277 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.163 0.837 32 H 0.429 0.571 33 H 0.154 0.846 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 21.534 0.548 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.318 4.318 4 C 0.070 3.930 5 N -0.251 5.251 6 C 0.298 3.702 7 O -0.367 6.367 8 C 0.301 3.699 9 O -0.386 6.386 10 N -0.318 5.318 11 C -0.024 4.024 12 C -0.186 4.186 13 C -0.129 4.129 14 C -0.177 4.177 15 C -0.136 4.136 16 C -0.013 4.013 17 N -0.126 5.126 18 C 0.138 3.862 19 C -0.582 4.582 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.102 5.102 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.181 0.819 32 H 0.268 0.732 33 H 0.170 0.830 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.532 20.138 0.668 20.456 hybrid contribution 1.032 0.452 -1.010 1.513 sum -2.500 20.590 -0.342 20.744 Atomic orbital electron populations 1.20031 0.87414 1.02549 1.02130 1.22022 0.96610 0.90885 1.02008 1.21280 0.88839 1.00554 1.21087 1.17976 0.87484 0.83519 1.04040 1.42323 1.09635 1.04761 1.68355 1.19918 0.89668 0.82384 0.78195 1.90391 1.26603 1.71985 1.47728 1.19657 0.88885 0.82846 0.78502 1.90818 1.26433 1.73484 1.47861 1.47951 1.08976 1.04664 1.70200 1.21820 0.85206 0.97356 0.98059 1.22362 0.98231 0.99031 0.99027 1.20718 0.94863 0.98419 0.98938 1.20965 1.02243 0.96859 0.97588 1.20791 0.94991 1.00323 0.97447 1.21916 0.89290 0.92875 0.97211 1.49600 1.06600 1.01912 1.54466 1.19694 0.77714 0.89722 0.99108 1.21276 1.13559 1.32171 0.91216 0.91715 1.24930 0.95585 0.94853 0.98224 1.69903 1.19129 1.32486 1.31048 0.86396 0.78094 0.78534 0.83590 1.19950 1.20840 1.19850 1.77375 0.86088 1.21815 1.24949 0.91289 0.91060 0.91425 0.81932 0.73197 0.82995 0.90189 0.86329 0.92016 0.91773 0.91776 0.90222 0.89737 0.90339 0.88166 0.93605 0.92332 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.44 36.00 0.38 -0.50 16 2 C 0.05 0.96 7.20 -82.47 -0.59 0.36 16 3 C -0.29 -5.54 9.58 -39.76 -0.38 -5.92 16 4 C 0.29 6.10 7.68 -152.86 -1.17 4.93 16 5 N -0.60 -11.19 5.40 -11.80 -0.06 -11.25 16 6 C 0.52 8.39 7.77 -11.65 -0.09 8.30 16 7 O -0.49 -7.81 10.21 5.46 0.06 -7.75 16 8 C 0.52 7.78 7.78 -11.65 -0.09 7.69 16 9 O -0.51 -8.79 15.98 5.49 0.09 -8.70 16 10 N -0.58 -7.02 2.96 -174.37 -0.52 -7.53 16 11 C 0.10 1.01 6.22 -5.10 -0.03 0.97 16 12 C -0.17 -1.54 9.50 -35.78 -0.34 -1.88 16 13 C -0.13 -1.13 5.86 -100.99 -0.59 -1.72 16 14 C -0.12 -0.82 9.96 36.00 0.36 -0.46 16 15 C -0.10 -0.83 5.98 -27.91 -0.17 -0.99 16 16 C 0.11 1.05 6.54 -3.26 -0.02 1.03 16 17 N -0.34 -7.97 3.62 -61.47 -0.22 -8.19 16 18 C 0.26 6.48 6.02 -5.19 -0.03 6.45 16 19 C -0.54 -14.89 9.39 -34.44 -0.32 -15.22 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 23 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 N -0.28 -6.32 12.56 33.64 0.42 -5.90 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.16 2.90 5.83 -52.49 -0.31 2.59 16 32 H 0.43 8.08 7.47 -40.82 -0.30 7.78 16 33 H 0.15 1.84 4.33 -54.96 -0.24 1.60 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 0.92 7.56 -52.48 -0.40 0.52 16 36 H 0.06 0.39 7.54 -51.93 -0.39 0.00 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.04 7.07 -51.92 -0.37 0.68 16 43 H 0.05 1.15 7.52 -51.93 -0.39 0.76 16 44 H 0.06 1.58 8.14 -51.94 -0.42 1.16 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -31.02 375.11 -8.23 -39.25 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.17 Total: 7.61 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -3.20 Total: 4.80 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.36 Total: -57.00 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.14 Total: -16.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.02 -8.23 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535268621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.415 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds