Wall clock time and date at job start Tue Mar 31 2020 17:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39696 * 125.77009 * 2 1 4 4 C 1.36219 * 107.85985 * 179.97438 * 3 2 1 5 5 N 1.39187 * 126.27412 * 180.02562 * 4 3 2 6 6 C 1.34785 * 120.00020 * 359.97388 * 5 4 3 7 7 O 1.21393 * 119.99490 * 0.02562 * 6 5 4 8 8 C 1.49307 * 119.99884 * 180.02562 * 6 5 4 9 9 O 1.21357 * 120.00080 * 353.80961 * 8 6 5 10 10 N 1.34781 * 119.99588 * 173.81006 * 8 6 5 11 11 C 1.47005 * 121.37533 * 1.98458 * 10 8 6 12 12 C 1.50320 * 109.16641 * 222.94826 * 11 10 8 13 13 C 1.29453 * 123.65563 * 349.02640 * 12 11 10 14 14 C 1.50697 * 117.69712 * 180.83362 * 13 12 11 15 15 C 1.49973 * 124.60742 * 0.85707 * 13 12 11 16 16 C 1.47336 * 121.37612 * 181.70658 * 10 8 6 17 17 N 1.35859 * 107.45456 * 359.97438 * 4 3 2 18 18 C 1.46500 * 126.09831 * 180.26224 * 17 4 3 19 19 C 1.50703 * 109.47257 * 269.71935 * 18 17 4 20 20 H 1.08001 * 120.00154 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99716 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46897 * 59.99860 * 23 21 19 25 25 H 1.48499 * 109.47175 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46867 * 300.00108 * 23 21 19 27 27 N 1.30854 * 125.77377 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47178 * 269.99888 * 1 2 3 29 29 H 1.09003 * 109.47017 * 30.00589 * 1 2 3 30 30 H 1.09009 * 109.47040 * 150.00061 * 1 2 3 31 31 H 1.08000 * 126.06743 * 359.97438 * 3 2 1 32 32 H 0.97003 * 120.00686 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.52572 * 342.86178 * 11 10 8 34 34 H 1.09002 * 109.51788 * 103.04284 * 11 10 8 35 35 H 1.08003 * 118.17306 * 169.04725 * 12 11 10 36 36 H 1.08993 * 109.47215 * 0.02562 * 14 13 12 37 37 H 1.09005 * 109.46647 * 120.00069 * 14 13 12 38 38 H 1.09003 * 109.47190 * 239.99484 * 14 13 12 39 39 H 1.08996 * 109.31193 * 101.28944 * 15 13 12 40 40 H 1.08999 * 109.31234 * 220.72002 * 15 13 12 41 41 H 1.08996 * 109.78104 * 237.81341 * 16 10 8 42 42 H 1.09010 * 109.77666 * 358.61759 * 16 10 8 43 43 H 1.09006 * 109.46909 * 29.71261 * 18 17 4 44 44 H 1.08989 * 109.47194 * 149.71470 * 18 17 4 45 45 H 0.97006 * 119.99856 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3235 1.1335 0.0000 4 6 3.6197 0.7145 0.0006 5 7 4.7484 1.5290 0.0013 6 6 4.6118 2.8699 0.0009 7 8 3.5044 3.3672 0.0004 8 6 5.8226 3.7436 0.0011 9 8 6.9260 3.2515 0.1149 10 7 5.6900 5.0789 -0.1252 11 6 4.3662 5.7109 -0.2216 12 6 4.4007 6.7684 -1.2894 13 6 5.4905 7.1895 -1.8470 14 6 5.3709 8.2697 -2.8910 15 6 6.8635 6.6778 -1.5276 16 6 6.8656 5.9661 -0.1661 17 7 3.6089 -0.6440 0.0015 18 6 4.7857 -1.5165 0.0078 19 6 5.1919 -1.8223 -1.4109 20 1 4.6295 -1.4085 -2.2348 21 6 6.2816 -2.6304 -1.6569 22 7 6.9668 -3.1339 -0.6536 23 14 6.7847 -3.0101 -3.4154 24 1 7.1097 -1.7447 -4.1214 25 1 7.9784 -3.8934 -3.4090 26 1 5.6664 -3.6934 -4.1136 27 7 2.2719 -1.0617 0.0005 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 1.9869 2.1596 -0.0004 32 1 5.6333 1.1318 0.0020 33 1 3.6209 4.9580 -0.4785 34 1 4.1098 6.1670 0.7346 35 1 3.4642 7.2011 -1.6090 36 1 4.3223 8.5395 -3.0162 37 1 5.9358 9.1461 -2.5733 38 1 5.7683 7.9051 -3.8383 39 1 7.1771 5.9788 -2.3028 40 1 7.5617 7.5143 -1.4964 41 1 6.8017 6.7004 0.6369 42 1 7.7762 5.3770 -0.0566 43 1 5.6067 -1.0155 0.5208 44 1 4.5466 -2.4453 0.5255 45 1 7.7333 -3.7027 -0.8268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535268621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:23 Heat of formation + Delta-G solvation = 23.365907 kcal Electronic energy + Delta-G solvation = -28508.227205 eV Core-core repulsion = 24527.816834 eV Total energy + Delta-G solvation = -3980.410372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.73947 -41.76372 -40.00923 -38.93756 -36.56877 -35.79408 -34.95929 -33.86112 -32.20596 -30.89598 -30.18536 -29.53621 -27.83545 -26.66966 -25.03819 -24.84699 -24.08473 -22.26881 -21.40678 -20.84335 -19.34083 -18.89975 -18.32704 -18.21791 -17.72771 -17.28114 -16.95914 -16.51998 -16.25802 -15.90642 -15.83632 -15.52638 -15.20225 -14.86271 -14.64432 -14.45275 -14.38366 -14.19053 -13.96575 -13.73885 -13.57616 -13.42233 -13.13923 -13.03109 -12.94099 -12.72578 -12.68683 -12.64892 -12.31050 -12.26576 -12.06581 -11.75667 -11.72720 -11.40695 -10.78919 -10.59241 -10.02840 -9.70389 -9.57640 -9.18527 -8.39173 -6.57143 -0.10419 0.75726 1.07057 1.27676 1.34768 1.36192 1.45071 1.73604 1.80050 2.07120 2.23346 2.33182 2.91446 2.92980 3.72400 3.79046 3.83316 4.04197 4.10037 4.18165 4.35168 4.49610 4.57530 4.61350 4.65424 4.65965 4.74322 4.80937 4.81869 4.89226 4.90019 4.94006 5.00588 5.06867 5.14955 5.17366 5.19380 5.25597 5.47235 5.53409 5.72912 5.81479 5.91750 5.93773 6.05379 6.11410 6.40379 6.54988 6.65288 6.95318 7.14781 8.67510 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003595 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.281507 B = 7786.390080 C = 9461.431295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.287 4.287 4 C 0.287 3.713 5 N -0.613 5.613 6 C 0.519 3.481 7 O -0.485 6.485 8 C 0.519 3.481 9 O -0.541 6.541 10 N -0.573 5.573 11 C 0.095 3.905 12 C -0.179 4.179 13 C -0.131 4.131 14 C -0.118 4.118 15 C -0.096 4.096 16 C 0.103 3.897 17 N -0.367 5.367 18 C 0.272 3.728 19 C -0.559 4.559 20 H 0.050 0.950 21 C 0.025 3.975 22 N -0.915 5.915 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.272 1.272 27 N -0.322 5.322 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.182 0.818 32 H 0.424 0.576 33 H 0.137 0.863 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 24.189 -0.416 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.318 4.318 4 C 0.065 3.935 5 N -0.260 5.260 6 C 0.302 3.698 7 O -0.359 6.359 8 C 0.300 3.700 9 O -0.419 6.419 10 N -0.306 5.306 11 C -0.025 4.025 12 C -0.197 4.197 13 C -0.131 4.131 14 C -0.175 4.175 15 C -0.134 4.134 16 C -0.018 4.018 17 N -0.153 5.153 18 C 0.154 3.846 19 C -0.598 4.598 20 H 0.068 0.932 21 C -0.177 4.177 22 N -0.552 5.552 23 Si 0.794 3.206 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.197 1.197 27 N -0.147 5.147 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.199 0.801 32 H 0.262 0.738 33 H 0.154 0.846 34 H 0.115 0.885 35 H 0.152 0.848 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.326 22.863 -0.293 23.270 hybrid contribution 1.190 -0.204 -0.672 1.382 sum -3.136 22.658 -0.964 22.895 Atomic orbital electron populations 1.20259 0.83477 1.04131 1.04052 1.22937 0.98890 0.89829 0.98882 1.21574 0.88135 1.01361 1.20778 1.18385 0.88856 0.82894 1.03359 1.42478 1.08823 1.05432 1.69292 1.20262 0.90419 0.81696 0.77463 1.90398 1.26719 1.71801 1.47029 1.19418 0.87794 0.83715 0.79032 1.90807 1.27020 1.74147 1.49939 1.48133 1.10673 1.03761 1.68011 1.21855 0.83793 0.97251 0.99642 1.22409 0.99235 0.98979 0.99088 1.20958 0.94635 0.98569 0.98986 1.20978 1.03001 0.96648 0.96855 1.20819 0.95772 1.00780 0.96023 1.22183 0.87835 0.92711 0.99022 1.49355 1.06414 1.02626 1.56905 1.19204 0.78588 0.89002 0.97852 1.21402 1.13953 1.32741 0.91661 0.93173 1.25738 0.95318 0.94370 1.02256 1.69988 1.19478 1.32784 1.32968 0.85424 0.77981 0.78574 0.78656 1.19380 1.19534 1.19715 1.77333 0.86115 1.23817 1.27474 0.89051 0.88286 0.91006 0.80135 0.73779 0.84615 0.88498 0.84790 0.91381 0.90348 0.91816 0.91509 0.87049 0.87875 0.89188 0.94122 0.95083 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.55 10.44 71.23 0.74 -0.81 16 2 C 0.06 2.28 7.20 43.06 0.31 2.59 16 3 C -0.29 -10.96 9.58 22.15 0.21 -10.75 16 4 C 0.29 12.25 7.68 131.25 1.01 13.26 16 5 N -0.61 -23.47 5.40 -309.57 -1.67 -25.14 16 6 C 0.52 16.96 7.77 87.22 0.68 17.63 16 7 O -0.49 -15.02 10.21 -3.38 -0.03 -15.06 16 8 C 0.52 15.59 7.78 87.22 0.68 16.27 16 9 O -0.54 -19.08 15.98 -3.27 -0.05 -19.13 16 10 N -0.57 -13.14 2.96 -823.93 -2.44 -15.58 16 11 C 0.09 1.81 6.22 85.42 0.53 2.34 16 12 C -0.18 -2.84 9.50 27.11 0.26 -2.58 16 13 C -0.13 -1.95 5.86 -15.14 -0.09 -2.04 16 14 C -0.12 -1.27 9.96 71.23 0.71 -0.56 16 15 C -0.10 -1.42 5.98 29.83 0.18 -1.24 16 16 C 0.10 1.82 6.54 86.43 0.57 2.38 16 17 N -0.37 -17.90 3.62 -348.39 -1.26 -19.16 16 18 C 0.27 14.61 6.02 85.63 0.52 15.13 16 19 C -0.56 -31.77 9.39 25.60 0.24 -31.53 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.02 1.38 5.46 84.65 0.46 1.84 16 22 N -0.91 -52.29 13.29 21.45 0.28 -52.01 16 23 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 N -0.32 -15.06 12.56 -47.49 -0.60 -15.66 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.18 6.13 5.83 -2.91 -0.02 6.12 16 32 H 0.42 16.91 7.47 -92.71 -0.69 16.22 16 33 H 0.14 3.10 4.33 -50.35 -0.22 2.88 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.13 1.70 7.56 -2.91 -0.02 1.68 16 36 H 0.07 0.66 7.54 -2.39 -0.02 0.64 16 37 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.81 7.07 -2.38 -0.02 1.79 16 43 H 0.04 2.18 7.52 -2.38 -0.02 2.16 16 44 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -68.68 375.11 3.39 -65.30 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.13 Total: 28.73 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 7.00 Total: 21.94 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -5.68 Total: -127.55 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.09 Total: -34.19 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.68 3.39 -65.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535268621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.663 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds