Wall clock time and date at job start Tue Mar 31 2020 17:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39694 * 125.77540 * 2 1 4 4 C 1.36215 * 107.85884 * 180.02562 * 3 2 1 5 5 N 1.39199 * 126.26893 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99829 * 0.02562 * 5 4 3 7 7 O 1.21386 * 120.00036 * 0.02562 * 6 5 4 8 8 C 1.49310 * 119.99762 * 179.97438 * 6 5 4 9 9 O 1.21368 * 119.99914 * 99.44247 * 8 6 5 10 10 N 1.34774 * 120.00282 * 279.45193 * 8 6 5 11 11 C 1.46497 * 120.00128 * 190.37633 * 10 8 6 12 12 C 1.52999 * 117.49832 * 16.05168 * 11 10 8 13 13 C 1.53000 * 117.49766 * 307.43004 * 11 10 8 14 14 C 1.46502 * 120.00005 * 10.37124 * 10 8 6 15 15 C 1.53003 * 117.49842 * 337.04652 * 14 10 8 16 16 C 1.52994 * 60.00210 * 252.51232 * 15 14 10 17 17 N 1.35852 * 107.45693 * 359.97438 * 4 3 2 18 18 C 1.46494 * 126.09446 * 179.97438 * 17 4 3 19 19 C 1.50703 * 109.47282 * 269.99892 * 18 17 4 20 20 H 1.08004 * 119.99926 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00223 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99765 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47393 * 59.99892 * 23 21 19 25 25 H 1.48501 * 109.46918 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47058 * 299.99618 * 23 21 19 27 27 N 1.30858 * 125.76614 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.47066 * 270.00446 * 1 2 3 29 29 H 1.09003 * 109.47360 * 30.00069 * 1 2 3 30 30 H 1.09001 * 109.47610 * 149.99928 * 1 2 3 31 31 H 1.08001 * 126.06910 * 0.04100 * 3 2 1 32 32 H 0.96998 * 120.00034 * 180.02562 * 5 4 3 33 33 H 1.09004 * 115.55036 * 161.75521 * 11 10 8 34 34 H 1.09004 * 117.50034 * 359.97438 * 12 11 10 35 35 H 1.09004 * 117.50136 * 145.02369 * 12 11 10 36 36 H 1.09003 * 117.49639 * 214.97748 * 13 11 10 37 37 H 1.08998 * 117.49824 * 359.97438 * 13 11 10 38 38 H 1.08992 * 115.55157 * 122.75647 * 14 10 8 39 39 H 1.08997 * 117.49463 * 0.02562 * 15 14 10 40 40 H 1.09000 * 117.50016 * 145.01836 * 15 14 10 41 41 H 1.08997 * 117.50025 * 252.51270 * 16 15 14 42 42 H 1.09000 * 117.50345 * 107.48878 * 16 15 14 43 43 H 1.09002 * 109.47868 * 29.99804 * 18 17 4 44 44 H 1.08996 * 109.47419 * 149.99761 * 18 17 4 45 45 H 0.96996 * 120.00044 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3236 1.1334 0.0000 4 6 3.6197 0.7143 -0.0006 5 7 4.7485 1.5289 -0.0013 6 6 4.6119 2.8697 -0.0009 7 8 3.5046 3.3670 0.0005 8 6 5.8227 3.7434 -0.0011 9 8 6.2135 4.2386 -1.0379 10 7 6.4817 3.9821 1.1501 11 6 7.5242 5.0102 1.1977 12 6 7.5691 6.0243 0.0529 13 6 8.6389 4.9349 0.1524 14 6 6.1554 3.2134 2.3538 15 6 4.7690 2.5704 2.4273 16 6 5.0939 3.7890 3.2934 17 7 3.6088 -0.6442 -0.0004 18 6 4.7856 -1.5167 -0.0013 19 6 5.1878 -1.8161 -1.4225 20 1 4.6234 -1.3979 -2.2429 21 6 6.2761 -2.6239 -1.6754 22 7 6.9630 -3.1336 -0.6764 23 14 6.7741 -2.9956 -3.4370 24 1 7.0982 -1.7273 -4.1379 25 1 7.9663 -3.8810 -3.4380 26 1 5.6533 -3.6748 -4.1354 27 7 2.2718 -1.0618 -0.0005 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9871 2.1596 0.0006 32 1 5.6333 1.1315 -0.0020 33 1 7.7913 5.3631 2.1938 34 1 6.8233 5.9262 -0.7359 35 1 7.8658 7.0447 0.2958 36 1 9.6393 5.2386 0.4607 37 1 8.5968 4.1202 -0.5705 38 1 6.9864 2.6714 2.8051 39 1 4.0999 2.7190 1.5798 40 1 4.6877 1.6051 2.9268 41 1 5.2265 3.6254 4.3629 42 1 4.6384 4.7396 3.0161 43 1 5.6081 -1.0181 0.5116 44 1 4.5479 -2.4478 0.5129 45 1 7.7284 -3.7022 -0.8542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600039716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:08 Heat of formation + Delta-G solvation = 116.498291 kcal Electronic energy + Delta-G solvation = -29526.289076 eV Core-core repulsion = 25549.917227 eV Total energy + Delta-G solvation = -3976.371848 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94944 -40.53522 -39.08239 -37.60709 -36.23728 -35.01526 -33.86315 -32.43855 -32.12953 -29.33861 -28.60534 -26.18011 -25.85475 -23.13904 -22.87877 -22.73641 -22.40279 -22.32918 -20.63566 -19.96032 -19.01900 -17.93316 -17.00887 -16.77237 -16.63308 -16.20027 -15.66475 -15.59314 -15.28415 -14.88123 -14.59844 -14.35222 -14.11459 -13.95277 -13.42170 -13.02898 -12.82906 -12.58684 -12.58319 -12.16022 -12.04480 -11.91511 -11.70021 -11.58758 -11.25283 -11.17225 -11.06695 -10.94495 -10.87147 -10.69762 -10.59203 -10.44781 -10.35847 -9.87411 -9.82117 -9.44221 -8.75946 -8.74333 -8.02119 -7.61334 -6.36727 -4.45327 1.59390 1.93965 2.11476 2.73457 3.00689 3.18578 3.22335 3.26994 3.35472 3.46378 3.58593 3.72241 4.07585 4.23055 4.47852 4.54199 4.66605 4.75347 4.79285 4.86609 4.96921 5.19372 5.26338 5.44314 5.50293 5.57593 5.58782 5.72099 5.81703 5.87454 5.96946 6.00579 6.03560 6.11190 6.13273 6.25952 6.33990 6.49496 6.74315 6.79628 6.95610 7.26615 7.42559 7.48711 7.55240 7.62879 7.75141 7.99071 8.51904 8.64139 9.22875 10.70380 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009225 B = 0.004755 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.478497 B = 5886.889797 C = 7740.264556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.052 3.948 3 C -0.288 4.288 4 C 0.294 3.706 5 N -0.624 5.624 6 C 0.540 3.460 7 O -0.492 6.492 8 C 0.520 3.480 9 O -0.490 6.490 10 N -0.544 5.544 11 C 0.071 3.929 12 C -0.189 4.189 13 C -0.182 4.182 14 C 0.053 3.947 15 C -0.216 4.216 16 C -0.176 4.176 17 N -0.340 5.340 18 C 0.257 3.743 19 C -0.544 4.544 20 H 0.065 0.935 21 C 0.069 3.931 22 N -0.890 5.890 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.273 1.273 27 N -0.277 5.277 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.161 0.839 32 H 0.421 0.579 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 14.725 8.861 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.320 4.320 4 C 0.072 3.928 5 N -0.273 5.273 6 C 0.324 3.676 7 O -0.367 6.367 8 C 0.303 3.697 9 O -0.363 6.363 10 N -0.276 5.276 11 C -0.032 4.032 12 C -0.227 4.227 13 C -0.220 4.220 14 C -0.051 4.051 15 C -0.253 4.253 16 C -0.214 4.214 17 N -0.126 5.126 18 C 0.139 3.861 19 C -0.582 4.582 20 H 0.083 0.917 21 C -0.135 4.135 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.198 1.198 27 N -0.103 5.103 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.259 0.741 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.030 13.889 8.338 16.200 hybrid contribution 1.087 0.207 -0.851 1.397 sum 1.117 14.096 7.487 16.000 Atomic orbital electron populations 1.20039 0.87454 1.02596 1.02137 1.22007 0.96597 0.90837 1.01848 1.21278 0.88949 1.00519 1.21235 1.17937 0.87473 0.83472 1.03878 1.42862 1.09207 1.04824 1.70397 1.19600 0.90290 0.82191 0.75472 1.90818 1.24161 1.73627 1.48095 1.20049 0.82831 0.82750 0.84103 1.90727 1.64585 1.49820 1.31163 1.46737 1.35724 1.36247 1.08852 1.21747 0.91868 0.92955 0.96650 1.23727 1.03184 0.94360 1.01380 1.23327 0.94203 1.02340 1.02178 1.22002 0.94261 0.99814 0.89007 1.24571 0.96558 0.98971 1.05176 1.23389 1.01695 0.98620 0.97709 1.49563 1.06556 1.01843 1.54629 1.19649 0.77702 0.89694 0.99012 1.21304 1.13540 1.32055 0.91293 0.91694 1.24914 0.95592 0.94782 0.98223 1.69893 1.19197 1.32447 1.31169 0.86418 0.78135 0.78595 0.83652 1.19890 1.20849 1.19799 1.77383 0.86082 1.21731 1.25073 0.91268 0.91054 0.91401 0.82127 0.74124 0.84575 0.85282 0.88593 0.88176 0.88006 0.84605 0.84583 0.86818 0.87559 0.88137 0.93805 0.92373 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.00 0.38 -0.52 16 2 C 0.05 0.99 7.20 -82.47 -0.59 0.40 16 3 C -0.29 -5.56 9.53 -39.77 -0.38 -5.94 16 4 C 0.29 5.88 7.28 -152.86 -1.11 4.76 16 5 N -0.62 -10.78 4.07 -26.42 -0.11 -10.89 16 6 C 0.54 8.97 4.20 -11.65 -0.05 8.93 16 7 O -0.49 -8.97 13.03 5.47 0.07 -8.90 16 8 C 0.52 7.91 7.26 -11.65 -0.08 7.83 16 9 O -0.49 -8.41 12.85 5.48 0.07 -8.34 16 10 N -0.54 -6.45 3.16 -159.14 -0.50 -6.96 16 11 C 0.07 0.71 6.65 -67.93 -0.45 0.25 16 12 C -0.19 -2.01 9.62 -26.73 -0.26 -2.27 16 13 C -0.18 -1.88 9.87 -26.73 -0.26 -2.14 16 14 C 0.05 0.54 6.42 -67.93 -0.44 0.10 16 15 C -0.22 -2.58 8.02 -26.73 -0.21 -2.79 16 16 C -0.18 -1.63 10.46 -26.73 -0.28 -1.91 16 17 N -0.34 -7.60 3.62 -61.47 -0.22 -7.82 16 18 C 0.26 6.20 6.02 -5.20 -0.03 6.17 16 19 C -0.54 -14.45 9.39 -34.44 -0.32 -14.77 16 20 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -24.00 13.29 55.43 0.74 -23.26 16 23 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 N -0.28 -6.17 12.56 33.64 0.42 -5.75 16 28 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.16 3.01 5.83 -52.49 -0.31 2.70 16 32 H 0.42 7.00 7.98 -40.82 -0.33 6.68 16 33 H 0.14 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.13 1.76 5.36 -51.93 -0.28 1.49 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.29 7.49 -51.93 -0.39 0.91 16 38 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.14 2.01 2.47 -82.80 -0.20 1.81 16 40 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 1.02 7.52 -51.93 -0.39 0.63 16 44 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -30.74 373.58 -9.21 -39.96 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.09 Total: 10.74 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -4.20 Total: -0.19 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.33 Total: -54.68 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.14 Total: -17.24 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.74 -9.21 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600039716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.454 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds