Wall clock time and date at job start Tue Mar 31 2020 17:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35218 * 126.06567 * 2 1 4 4 C 1.40462 * 107.86824 * 179.85076 * 3 2 1 5 5 N 1.39936 * 125.97861 * 180.16894 * 4 3 2 6 6 C 1.34779 * 119.99952 * 0.27021 * 5 4 3 7 7 O 1.21381 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.49339 * 119.99927 * 180.02562 * 6 5 4 9 9 O 1.21358 * 119.99970 * 99.45122 * 8 6 5 10 10 N 1.34779 * 119.99969 * 279.45424 * 8 6 5 11 11 C 1.46505 * 119.99866 * 190.38405 * 10 8 6 12 12 C 1.52999 * 117.49920 * 16.05062 * 11 10 8 13 13 C 1.53001 * 117.49606 * 307.42845 * 11 10 8 14 14 C 1.46492 * 120.00281 * 10.38030 * 10 8 6 15 15 C 1.53005 * 117.49950 * 337.04322 * 14 10 8 16 16 C 1.52995 * 60.00206 * 252.51139 * 15 14 10 17 17 N 1.31268 * 108.03826 * 0.42122 * 4 3 2 18 18 N 1.34988 * 126.06215 * 180.31499 * 2 1 3 19 19 C 1.46502 * 125.96874 * 359.97438 * 18 2 1 20 20 C 1.50700 * 109.47021 * 90.00389 * 19 18 2 21 21 H 1.07994 * 120.00380 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99573 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00546 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99610 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47398 * 90.00077 * 24 22 20 26 26 H 1.48503 * 109.46993 * 210.00139 * 24 22 20 27 27 H 1.48506 * 109.47327 * 329.99739 * 24 22 20 28 28 H 1.08996 * 109.47188 * 269.69040 * 1 2 3 29 29 H 1.09001 * 109.47290 * 149.68719 * 1 2 3 30 30 H 1.09001 * 109.47016 * 29.68821 * 1 2 3 31 31 H 1.07998 * 126.06132 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99908 * 180.27496 * 5 4 3 33 33 H 1.08996 * 115.54836 * 161.76122 * 11 10 8 34 34 H 1.09000 * 117.49839 * 0.02562 * 12 11 10 35 35 H 1.08994 * 117.49980 * 145.02425 * 12 11 10 36 36 H 1.09001 * 117.50087 * 214.98241 * 13 11 10 37 37 H 1.08999 * 117.50112 * 0.02562 * 13 11 10 38 38 H 1.08994 * 115.55373 * 122.75522 * 14 10 8 39 39 H 1.09003 * 117.49630 * 0.02562 * 15 14 10 40 40 H 1.09002 * 117.50031 * 145.01665 * 15 14 10 41 41 H 1.08998 * 117.49851 * 252.50591 * 16 15 14 42 42 H 1.09003 * 117.49750 * 107.48879 * 16 15 14 43 43 H 1.09000 * 109.46833 * 210.00054 * 19 18 2 44 44 H 1.08998 * 109.47040 * 329.99978 * 19 18 2 45 45 H 0.96997 * 120.00657 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3030 1.0930 0.0000 4 6 3.6374 0.6544 0.0035 5 7 4.7720 1.4734 0.0080 6 6 4.6352 2.8142 0.0147 7 8 3.5279 3.3113 0.0175 8 6 5.8461 3.6883 0.0189 9 8 6.2369 4.1886 -1.0153 10 7 6.5049 3.9215 1.1714 11 6 7.5472 4.9497 1.2242 12 6 7.5919 5.9694 0.0844 13 6 8.6620 4.8798 0.1786 14 6 6.1788 3.1468 2.3712 15 6 4.7925 2.5031 2.4414 16 6 5.1171 3.7175 3.3136 17 7 3.6338 -0.6583 -0.0037 18 7 2.3016 -1.0912 -0.0060 19 6 1.8496 -2.4847 -0.0131 20 6 1.6942 -2.9551 -1.4364 21 1 1.9101 -2.2832 -2.2538 22 6 1.2765 -4.2435 -1.6948 23 7 1.0141 -5.0619 -0.6995 24 14 1.0832 -4.8263 -3.4590 25 1 2.3639 -5.4121 -3.9300 26 1 0.0141 -5.8549 -3.5262 27 1 0.7176 -3.6754 -4.3234 28 1 -0.3633 -0.0056 1.0276 29 1 -0.3634 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9716 2.1209 0.0004 32 1 5.6569 1.0762 0.0061 33 1 7.8141 5.2977 2.2220 34 1 6.8457 5.8755 -0.7045 35 1 7.8883 6.9886 0.3322 36 1 9.6623 5.1822 0.4884 37 1 8.6197 4.0691 -0.5488 38 1 7.0099 2.6029 2.8199 39 1 4.1233 2.6557 1.5946 40 1 4.7115 1.5352 2.9362 41 1 5.2495 3.5486 4.3823 42 1 4.6613 4.6693 3.0408 43 1 2.5843 -3.1075 0.4972 44 1 0.8912 -2.5585 0.5007 45 1 0.7198 -5.9681 -0.8813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600040065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:11 Heat of formation + Delta-G solvation = 117.662702 kcal Electronic energy + Delta-G solvation = -28764.284840 eV Core-core repulsion = 24787.963484 eV Total energy + Delta-G solvation = -3976.321356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94501 -40.58167 -39.21827 -37.69809 -36.34247 -35.15767 -33.46467 -32.53310 -31.56767 -30.94548 -27.28425 -26.49383 -25.87030 -23.39547 -22.98983 -22.67344 -22.48336 -22.34861 -20.60013 -20.06916 -19.01062 -18.01656 -16.90330 -16.74357 -16.51443 -16.15737 -15.74985 -15.67504 -15.45762 -15.00730 -14.68078 -14.42184 -14.14350 -14.05490 -13.52502 -13.13570 -12.69809 -12.53335 -12.43360 -12.32190 -12.14556 -11.92080 -11.68703 -11.49514 -11.30734 -11.22151 -11.05048 -10.99177 -10.86294 -10.74689 -10.65506 -10.51700 -10.28279 -9.97713 -9.62469 -9.49741 -8.86906 -8.68681 -8.08139 -7.61812 -6.30352 -4.38168 1.55072 1.87808 2.05185 2.67652 2.84001 3.19607 3.26089 3.26906 3.30752 3.52391 3.56645 3.63723 4.10303 4.27519 4.39992 4.44455 4.57462 4.66064 4.68607 4.76268 5.03640 5.08300 5.29325 5.38409 5.45778 5.49330 5.56237 5.68919 5.71995 5.80680 5.82837 5.98186 6.01950 6.04856 6.23328 6.32488 6.37457 6.54537 6.69212 6.83898 6.97471 7.19717 7.36799 7.43859 7.62131 7.77921 7.82899 7.94282 8.50605 8.69196 9.28750 10.77044 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.002715 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.449716 B =10310.329972 C =10737.050149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.096 3.904 3 C -0.290 4.290 4 C 0.258 3.742 5 N -0.616 5.616 6 C 0.540 3.460 7 O -0.492 6.492 8 C 0.519 3.481 9 O -0.492 6.492 10 N -0.544 5.544 11 C 0.070 3.930 12 C -0.189 4.189 13 C -0.182 4.182 14 C 0.052 3.948 15 C -0.214 4.214 16 C -0.177 4.177 17 N -0.311 5.311 18 N -0.312 5.312 19 C 0.258 3.742 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.271 1.271 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.415 0.585 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.319 17.791 8.950 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.321 4.321 4 C 0.006 3.994 5 N -0.265 5.265 6 C 0.323 3.677 7 O -0.366 6.366 8 C 0.301 3.699 9 O -0.366 6.366 10 N -0.276 5.276 11 C -0.033 4.033 12 C -0.226 4.226 13 C -0.221 4.221 14 C -0.052 4.052 15 C -0.250 4.250 16 C -0.216 4.216 17 N -0.141 5.141 18 N -0.095 5.095 19 C 0.140 3.860 20 C -0.577 4.577 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.177 0.823 32 H 0.251 0.749 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.364 17.060 8.421 21.665 hybrid contribution 0.012 -0.071 -0.814 0.817 sum 10.376 16.988 7.607 21.310 Atomic orbital electron populations 1.20402 0.87740 1.04053 1.02661 1.21067 0.95019 0.86990 1.00486 1.21233 0.89556 0.99877 1.21392 1.18853 0.86687 0.89689 1.04218 1.42560 1.08482 1.04319 1.71171 1.19621 0.90162 0.82325 0.75557 1.90838 1.24139 1.73644 1.47991 1.20163 0.82834 0.82848 0.84019 1.90721 1.64676 1.49733 1.31447 1.46768 1.35736 1.36089 1.09015 1.21757 0.91822 0.93006 0.96690 1.23729 1.03095 0.94366 1.01459 1.23316 0.94233 1.02388 1.02127 1.21990 0.94234 0.99816 0.89160 1.24586 0.96327 0.98950 1.05154 1.23399 1.01660 0.98829 0.97674 1.77310 1.00052 1.08163 1.28583 1.49072 1.00853 1.07934 1.51599 1.19735 0.96056 0.71123 0.99048 1.21316 1.47019 0.98039 0.91302 0.91684 1.24920 0.94579 0.96016 0.98180 1.69909 1.44798 1.06990 1.31192 0.86356 0.78058 0.78608 0.83690 1.20307 1.20847 1.19602 0.90932 0.89776 0.90502 0.82349 0.74877 0.84580 0.85246 0.88551 0.88189 0.88142 0.84729 0.84444 0.86765 0.87570 0.88133 0.92888 0.92648 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.89 36.00 0.36 -1.11 16 2 C 0.10 1.91 6.92 -82.28 -0.57 1.34 16 3 C -0.29 -5.59 9.49 -39.82 -0.38 -5.96 16 4 C 0.26 4.89 7.71 -154.55 -1.19 3.70 16 5 N -0.62 -9.28 4.09 -26.20 -0.11 -9.39 16 6 C 0.54 8.13 4.20 -11.64 -0.05 8.08 16 7 O -0.49 -8.60 13.03 5.47 0.07 -8.53 16 8 C 0.52 6.94 7.26 -11.64 -0.08 6.85 16 9 O -0.49 -7.54 12.85 5.49 0.07 -7.47 16 10 N -0.54 -5.53 3.16 -159.13 -0.50 -6.03 16 11 C 0.07 0.59 6.65 -67.93 -0.45 0.14 16 12 C -0.19 -1.76 9.62 -26.73 -0.26 -2.02 16 13 C -0.18 -1.55 9.87 -26.73 -0.26 -1.81 16 14 C 0.05 0.44 6.42 -67.93 -0.44 0.00 16 15 C -0.21 -2.29 8.02 -26.73 -0.21 -2.51 16 16 C -0.18 -1.47 10.46 -26.73 -0.28 -1.75 16 17 N -0.31 -6.76 12.59 31.41 0.40 -6.36 16 18 N -0.31 -7.03 3.59 -58.33 -0.21 -7.24 16 19 C 0.26 6.36 5.81 -5.19 -0.03 6.33 16 20 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 24 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.48 7.71 -51.93 -0.40 1.07 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.16 2.97 5.91 -52.49 -0.31 2.66 16 32 H 0.42 5.26 8.82 -40.82 -0.36 4.90 16 33 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.13 1.60 5.36 -51.93 -0.28 1.32 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.05 7.49 -51.93 -0.39 0.66 16 38 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.14 1.90 2.50 -82.82 -0.21 1.69 16 40 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.06 1.35 7.65 -51.93 -0.40 0.95 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -31.29 373.60 -9.32 -40.61 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.11 Total: 8.57 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -4.27 Total: -1.81 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.31 Total: -52.82 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.14 Total: -16.00 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.29 -9.32 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600040065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.272 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds