Wall clock time and date at job start Tue Mar 31 2020 16:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38233 * 120.40473 * 2 1 4 4 C 1.39522 * 118.32580 * 179.97438 * 3 2 1 5 5 N 1.38923 * 120.52099 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00111 * 174.62312 * 5 4 3 7 7 O 1.21343 * 119.99997 * 5.02637 * 6 5 4 8 8 C 1.49378 * 119.99989 * 185.03507 * 6 5 4 9 9 O 1.21358 * 120.00282 * 353.63507 * 8 6 5 10 10 N 1.34775 * 120.00026 * 173.64032 * 8 6 5 11 11 C 1.46927 * 120.63037 * 171.35291 * 10 8 6 12 12 C 1.53193 * 108.89635 * 126.46038 * 11 10 8 13 13 C 1.53042 * 109.31195 * 54.55732 * 12 11 10 14 14 C 1.50701 * 109.45683 * 178.62966 * 13 12 11 15 15 H 1.07996 * 120.00016 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99830 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00133 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47061 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47136 * 119.99817 * 18 16 14 21 21 H 1.48496 * 109.47354 * 240.00123 * 18 16 14 22 22 C 1.53037 * 109.54142 * 298.64011 * 13 12 11 23 23 C 1.46965 * 120.65205 * 351.16071 * 10 8 6 24 24 N 1.32935 * 118.95244 * 0.27385 * 4 3 2 25 25 C 1.31730 * 120.70539 * 359.44867 * 24 4 3 26 26 C 1.50704 * 119.08590 * 180.28626 * 25 24 4 27 27 N 1.31802 * 121.83305 * 0.56898 * 25 24 4 28 28 H 1.08996 * 109.47764 * 89.99684 * 1 2 3 29 29 H 1.09004 * 109.46702 * 209.99652 * 1 2 3 30 30 H 1.09004 * 109.47391 * 329.99283 * 1 2 3 31 31 H 1.07998 * 120.83502 * 359.96283 * 3 2 1 32 32 H 0.97004 * 119.99798 * 354.61090 * 5 4 3 33 33 H 1.08998 * 109.59125 * 6.59540 * 11 10 8 34 34 H 1.09002 * 109.58457 * 246.31538 * 11 10 8 35 35 H 1.08996 * 109.49755 * 174.51081 * 12 11 10 36 36 H 1.09005 * 109.49345 * 294.57973 * 12 11 10 37 37 H 1.08997 * 109.45904 * 58.66316 * 13 12 11 38 38 H 0.96998 * 120.00120 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.50070 * 181.32045 * 22 13 12 40 40 H 1.09007 * 109.49353 * 301.40947 * 22 13 12 41 41 H 1.08999 * 109.46365 * 113.75481 * 23 10 8 42 42 H 1.08997 * 109.71314 * 353.47084 * 23 10 8 43 43 H 1.08998 * 109.46929 * 270.27738 * 26 25 24 44 44 H 1.08998 * 109.47126 * 30.27268 * 26 25 24 45 45 H 1.09006 * 109.47098 * 150.27414 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.1922 0.0000 4 6 3.6009 1.1416 0.0005 5 7 4.3494 2.3120 0.0011 6 6 5.6914 2.2536 0.1110 7 8 6.2534 1.1782 0.1176 8 6 6.4869 3.5128 0.2249 9 8 5.9400 4.5892 0.1027 10 7 7.8121 3.4534 0.4632 11 6 8.6407 4.6646 0.3909 12 6 9.4226 4.8097 1.7002 13 6 10.2101 3.5244 1.9646 14 6 11.0069 3.6761 3.2346 15 1 10.9564 4.5966 3.7971 16 6 11.8005 2.6395 3.6786 17 7 11.8616 1.5183 2.9939 18 14 12.7877 2.8272 5.2532 19 1 12.5465 4.1738 5.8311 20 1 12.3683 1.7877 6.2272 21 1 14.2334 2.6698 4.9529 22 6 9.2395 2.3500 2.1091 23 6 8.4556 2.1770 0.8044 24 7 4.2018 -0.0442 -0.0045 25 6 3.4956 -1.1562 0.0009 26 6 4.2145 -2.4806 0.0015 27 7 2.1776 -1.1427 0.0004 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.6869 2.1390 -0.0006 32 1 3.9061 3.1712 -0.0778 33 1 8.0021 5.5363 0.2481 34 1 9.3373 4.5815 -0.4434 35 1 10.1129 5.6495 1.6206 36 1 8.7276 4.9865 2.5212 37 1 10.8871 3.3355 1.1315 38 1 12.4195 0.7890 3.3064 39 1 9.7995 1.4391 2.3206 40 1 8.5463 2.5494 2.9264 41 1 9.1371 1.8884 0.0042 42 1 7.6965 1.4056 0.9337 43 1 4.3883 -2.8001 -1.0260 44 1 5.1698 -2.3753 0.5156 45 1 3.6055 -3.2245 0.5152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602036538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:41 Heat of formation + Delta-G solvation = 0.169454 kcal Electronic energy + Delta-G solvation = -28423.960394 eV Core-core repulsion = 24442.544148 eV Total energy + Delta-G solvation = -3981.416245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.66672 -40.58218 -38.67863 -37.13160 -35.86362 -34.60241 -33.53878 -32.13102 -31.28747 -30.12615 -29.40728 -28.41828 -26.83490 -25.26741 -23.24587 -22.69435 -22.46057 -21.73824 -20.49809 -19.17730 -17.91348 -17.82742 -16.62286 -16.60279 -16.23204 -16.09752 -15.71401 -15.42459 -15.04452 -14.55265 -14.45580 -14.14622 -13.93595 -13.64968 -13.20755 -13.15004 -12.94939 -12.87969 -12.76295 -12.59119 -12.40670 -12.38613 -11.83223 -11.48957 -11.45347 -11.05121 -10.97624 -10.93236 -10.61873 -10.41088 -10.13301 -10.00664 -9.85066 -9.54587 -9.21823 -9.15105 -9.05003 -8.63789 -8.39162 -8.15837 -6.02976 -4.09520 0.60744 0.82603 1.62159 2.08251 3.19824 3.27235 3.33377 3.35821 3.39351 3.61583 3.73663 3.91656 4.27510 4.40647 4.46835 4.73756 4.84952 5.11931 5.16311 5.23745 5.26937 5.42831 5.46902 5.54526 5.57260 5.70885 5.78389 5.83265 5.92831 6.01829 6.17813 6.25388 6.37725 6.42874 6.54267 6.60596 6.73872 6.93842 7.03921 7.10094 7.23266 7.59633 7.62779 7.72520 7.90516 8.00228 8.04760 8.10772 8.39045 8.93924 9.55632 11.02542 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.002765 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.739272 B =10125.029026 C =11197.088681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.198 3.802 3 C -0.270 4.270 4 C 0.413 3.587 5 N -0.636 5.636 6 C 0.501 3.499 7 O -0.426 6.426 8 C 0.503 3.497 9 O -0.541 6.541 10 N -0.557 5.557 11 C 0.107 3.893 12 C -0.123 4.123 13 C 0.045 3.955 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.123 4.123 23 C 0.066 3.934 24 N -0.516 5.516 25 C 0.353 3.647 26 C -0.085 4.085 27 N -0.544 5.544 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.431 0.569 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.029 0.971 38 H 0.260 0.740 39 H 0.107 0.893 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.120 0.880 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.428 -2.737 -8.110 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.053 3.947 3 C -0.296 4.296 4 C 0.173 3.827 5 N -0.285 5.285 6 C 0.282 3.718 7 O -0.292 6.292 8 C 0.285 3.715 9 O -0.421 6.421 10 N -0.289 5.289 11 C -0.014 4.014 12 C -0.161 4.161 13 C 0.027 3.973 14 C -0.551 4.551 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.161 4.161 23 C -0.055 4.055 24 N -0.238 5.238 25 C 0.086 3.914 26 C -0.143 4.143 27 N -0.263 5.263 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.166 0.834 32 H 0.270 0.730 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.125 0.875 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.137 0.863 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.573 -3.907 -8.144 21.556 hybrid contribution 0.070 1.430 0.845 1.662 sum -19.503 -2.477 -7.299 20.971 Atomic orbital electron populations 1.20767 0.87590 1.04116 1.03685 1.21468 0.97437 0.87344 0.88405 1.22060 0.92904 1.01486 1.13168 1.18621 0.87924 0.86635 0.89516 1.43318 1.06917 1.08100 1.70131 1.20785 0.82293 0.90886 0.77829 1.90686 1.67727 1.30299 1.40532 1.19617 0.83611 0.88232 0.80074 1.90713 1.70029 1.29406 1.51972 1.48241 1.05611 1.12181 1.62841 1.21929 0.93370 0.86142 0.99964 1.22018 0.98405 1.01304 0.94340 1.18690 0.92420 0.88937 0.97261 1.21214 1.25534 1.00195 1.08142 0.92644 1.24972 0.96646 0.95354 0.97046 1.69848 1.39678 1.04500 1.38806 0.86561 0.79921 0.78092 0.83570 1.19862 1.21051 1.21040 1.22034 0.97095 1.04542 0.92420 1.23116 0.99012 0.83687 0.99645 1.68275 1.40321 0.96915 1.18335 1.23229 0.86118 0.94171 0.87926 1.20596 1.00372 0.89333 1.04022 1.68144 1.09627 1.30033 1.18497 0.89632 0.89795 0.90082 0.83361 0.72964 0.89977 0.91272 0.91729 0.92777 0.95336 0.92969 0.87476 0.94489 0.91645 0.86331 0.89491 0.89032 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.21 36.00 0.37 -0.23 16 2 C 0.20 1.95 6.82 -82.31 -0.56 1.39 16 3 C -0.27 -2.63 9.72 -39.11 -0.38 -3.01 16 4 C 0.41 5.35 7.45 -154.49 -1.15 4.20 16 5 N -0.64 -8.03 5.37 -11.71 -0.06 -8.09 16 6 C 0.50 7.91 7.70 -11.62 -0.09 7.82 16 7 O -0.43 -7.63 11.49 5.50 0.06 -7.57 16 8 C 0.50 8.58 7.73 -11.62 -0.09 8.49 16 9 O -0.54 -9.51 15.93 5.49 0.09 -9.42 16 10 N -0.56 -10.15 2.98 -173.27 -0.52 -10.67 16 11 C 0.11 1.89 6.44 -3.71 -0.02 1.86 16 12 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 13 C 0.05 1.08 2.06 -91.73 -0.19 0.89 16 14 C -0.51 -13.68 8.56 -34.44 -0.29 -13.97 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.69 11.31 55.43 0.63 -24.07 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.12 -2.81 5.15 -26.61 -0.14 -2.94 16 23 C 0.07 1.28 5.97 -3.69 -0.02 1.26 16 24 N -0.52 -7.69 7.95 -9.91 -0.08 -7.77 16 25 C 0.35 4.59 7.64 -157.24 -1.20 3.39 16 26 C -0.08 -0.85 10.32 36.01 0.37 -0.48 16 27 N -0.54 -6.51 10.27 -7.05 -0.07 -6.58 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.43 4.25 8.20 -40.82 -0.33 3.91 16 33 H 0.08 1.37 7.01 -51.93 -0.36 1.00 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.11 2.75 6.03 -51.93 -0.31 2.43 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.12 2.32 4.33 -54.75 -0.24 2.08 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -31.73 369.86 -9.32 -41.05 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.28 Total: 3.95 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -3.64 Total: 7.62 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.10 Total: -57.17 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.15 Total: -16.99 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.73 -9.32 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602036538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.224 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds