Wall clock time and date at job start Tue Mar 31 2020 16:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38233 * 120.40473 * 2 1 4 4 C 1.39522 * 118.32580 * 179.97438 * 3 2 1 5 5 N 1.38923 * 120.52099 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00111 * 174.62312 * 5 4 3 7 7 O 1.21343 * 119.99997 * 5.02637 * 6 5 4 8 8 C 1.49378 * 119.99989 * 185.03507 * 6 5 4 9 9 O 1.21358 * 120.00282 * 353.63507 * 8 6 5 10 10 N 1.34775 * 120.00026 * 173.64032 * 8 6 5 11 11 C 1.46927 * 120.63037 * 171.35291 * 10 8 6 12 12 C 1.53193 * 108.89635 * 126.46038 * 11 10 8 13 13 C 1.53042 * 109.31195 * 54.55732 * 12 11 10 14 14 C 1.50701 * 109.45683 * 178.62966 * 13 12 11 15 15 H 1.07996 * 120.00016 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99830 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00133 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47061 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47136 * 119.99817 * 18 16 14 21 21 H 1.48496 * 109.47354 * 240.00123 * 18 16 14 22 22 C 1.53037 * 109.54142 * 298.64011 * 13 12 11 23 23 C 1.46965 * 120.65205 * 351.16071 * 10 8 6 24 24 N 1.32935 * 118.95244 * 0.27385 * 4 3 2 25 25 C 1.31730 * 120.70539 * 359.44867 * 24 4 3 26 26 C 1.50704 * 119.08590 * 180.28626 * 25 24 4 27 27 N 1.31802 * 121.83305 * 0.56898 * 25 24 4 28 28 H 1.08996 * 109.47764 * 89.99684 * 1 2 3 29 29 H 1.09004 * 109.46702 * 209.99652 * 1 2 3 30 30 H 1.09004 * 109.47391 * 329.99283 * 1 2 3 31 31 H 1.07998 * 120.83502 * 359.96283 * 3 2 1 32 32 H 0.97004 * 119.99798 * 354.61090 * 5 4 3 33 33 H 1.08998 * 109.59125 * 6.59540 * 11 10 8 34 34 H 1.09002 * 109.58457 * 246.31538 * 11 10 8 35 35 H 1.08996 * 109.49755 * 174.51081 * 12 11 10 36 36 H 1.09005 * 109.49345 * 294.57973 * 12 11 10 37 37 H 1.08997 * 109.45904 * 58.66316 * 13 12 11 38 38 H 0.96998 * 120.00120 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.50070 * 181.32045 * 22 13 12 40 40 H 1.09007 * 109.49353 * 301.40947 * 22 13 12 41 41 H 1.08999 * 109.46365 * 113.75481 * 23 10 8 42 42 H 1.08997 * 109.71314 * 353.47084 * 23 10 8 43 43 H 1.08998 * 109.46929 * 270.27738 * 26 25 24 44 44 H 1.08998 * 109.47126 * 30.27268 * 26 25 24 45 45 H 1.09006 * 109.47098 * 150.27414 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.1922 0.0000 4 6 3.6009 1.1416 0.0005 5 7 4.3494 2.3120 0.0011 6 6 5.6914 2.2536 0.1110 7 8 6.2534 1.1782 0.1176 8 6 6.4869 3.5128 0.2249 9 8 5.9400 4.5892 0.1027 10 7 7.8121 3.4534 0.4632 11 6 8.6407 4.6646 0.3909 12 6 9.4226 4.8097 1.7002 13 6 10.2101 3.5244 1.9646 14 6 11.0069 3.6761 3.2346 15 1 10.9564 4.5966 3.7971 16 6 11.8005 2.6395 3.6786 17 7 11.8616 1.5183 2.9939 18 14 12.7877 2.8272 5.2532 19 1 12.5465 4.1738 5.8311 20 1 12.3683 1.7877 6.2272 21 1 14.2334 2.6698 4.9529 22 6 9.2395 2.3500 2.1091 23 6 8.4556 2.1770 0.8044 24 7 4.2018 -0.0442 -0.0045 25 6 3.4956 -1.1562 0.0009 26 6 4.2145 -2.4806 0.0015 27 7 2.1776 -1.1427 0.0004 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.6869 2.1390 -0.0006 32 1 3.9061 3.1712 -0.0778 33 1 8.0021 5.5363 0.2481 34 1 9.3373 4.5815 -0.4434 35 1 10.1129 5.6495 1.6206 36 1 8.7276 4.9865 2.5212 37 1 10.8871 3.3355 1.1315 38 1 12.4195 0.7890 3.3064 39 1 9.7995 1.4391 2.3206 40 1 8.5463 2.5494 2.9264 41 1 9.1371 1.8884 0.0042 42 1 7.6965 1.4056 0.9337 43 1 4.3883 -2.8001 -1.0260 44 1 5.1698 -2.3753 0.5156 45 1 3.6055 -3.2245 0.5152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602036538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:40 Heat of formation + Delta-G solvation = -19.281163 kcal Electronic energy + Delta-G solvation = -28424.803836 eV Core-core repulsion = 24442.544148 eV Total energy + Delta-G solvation = -3982.259687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68854 -41.76767 -39.98828 -38.66855 -37.00588 -35.40136 -35.32046 -33.13126 -33.04203 -31.79946 -30.07527 -29.24421 -28.46247 -26.71468 -24.68769 -24.12596 -23.57478 -22.94058 -21.78150 -20.71588 -19.15264 -18.95877 -18.43391 -17.78786 -17.53081 -17.42694 -16.56317 -16.49310 -16.42121 -16.30322 -15.53634 -15.34400 -15.21369 -14.84926 -14.67793 -14.47481 -14.21102 -14.02311 -13.93296 -13.60698 -13.40844 -13.30598 -13.20588 -13.04909 -12.85815 -12.57619 -12.43320 -12.29705 -12.17390 -11.97763 -11.81826 -11.54846 -11.13258 -11.03108 -10.90429 -10.60409 -10.41713 -9.99972 -9.89377 -9.74487 -8.08784 -6.22481 -0.38483 -0.02829 0.45383 0.92810 1.39337 1.42218 1.52368 1.92877 2.13968 2.42964 2.71633 2.83246 3.00011 3.17931 3.21151 3.59379 4.04906 4.05898 4.12663 4.24950 4.27446 4.39703 4.45289 4.53346 4.59071 4.68929 4.69816 4.75067 4.80162 4.86293 4.88446 4.93617 5.11260 5.13555 5.16578 5.20535 5.33747 5.41118 5.51829 5.54885 5.61781 5.94837 6.04892 6.07451 6.18871 6.36707 6.50487 6.71428 6.88231 7.15663 7.45520 8.95035 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.002765 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.739272 B =10125.029026 C =11197.088681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.190 3.810 3 C -0.253 4.253 4 C 0.385 3.615 5 N -0.620 5.620 6 C 0.504 3.496 7 O -0.454 6.454 8 C 0.509 3.491 9 O -0.541 6.541 10 N -0.566 5.566 11 C 0.113 3.887 12 C -0.113 4.113 13 C 0.042 3.958 14 C -0.532 4.532 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.914 5.914 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.280 1.280 22 C -0.112 4.112 23 C 0.084 3.916 24 N -0.554 5.554 25 C 0.334 3.666 26 C -0.082 4.082 27 N -0.552 5.552 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.188 0.812 32 H 0.444 0.556 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.005 0.995 38 H 0.261 0.739 39 H 0.077 0.923 40 H 0.024 0.976 41 H 0.063 0.937 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 -1.770 -8.384 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.045 3.955 3 C -0.278 4.278 4 C 0.147 3.853 5 N -0.270 5.270 6 C 0.285 3.715 7 O -0.322 6.322 8 C 0.291 3.709 9 O -0.421 6.421 10 N -0.298 5.298 11 C -0.009 4.009 12 C -0.152 4.152 13 C 0.024 3.976 14 C -0.570 4.570 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.553 5.553 18 Si 0.777 3.223 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.206 1.206 22 C -0.151 4.151 23 C -0.037 4.037 24 N -0.276 5.276 25 C 0.066 3.934 26 C -0.140 4.140 27 N -0.271 5.271 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.205 0.795 32 H 0.286 0.714 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.140 0.860 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.029 -2.907 -8.428 23.765 hybrid contribution 0.687 1.131 0.913 1.607 sum -21.341 -1.776 -7.515 22.696 Atomic orbital electron populations 1.20905 0.84392 1.05382 1.05023 1.22251 0.99392 0.86775 0.87082 1.22446 0.91373 1.03242 1.10751 1.18941 0.89203 0.86117 0.91070 1.43097 1.05708 1.08967 1.69229 1.20525 0.83290 0.89862 0.77803 1.90669 1.68486 1.30780 1.42288 1.19784 0.83134 0.88745 0.79262 1.90706 1.69908 1.29688 1.51790 1.48192 1.06262 1.11660 1.63681 1.21905 0.93610 0.86545 0.98799 1.21860 0.98214 0.99506 0.95573 1.18660 0.92471 0.91203 0.95310 1.21575 1.26127 1.00069 1.09237 0.93032 1.25702 0.97733 0.95171 0.99912 1.69978 1.40211 1.05008 1.40123 0.85619 0.78542 0.78086 0.80072 1.19324 1.20895 1.20614 1.21795 0.96632 1.02779 0.93896 1.22791 0.98681 0.84640 0.97608 1.68195 1.41860 0.98088 1.19488 1.23632 0.86813 0.94491 0.88457 1.20635 0.99840 0.88812 1.04710 1.68227 1.09149 1.31260 1.18511 0.88025 0.89804 0.87563 0.79497 0.71407 0.88322 0.90000 0.90726 0.93574 0.97683 0.92995 0.90504 0.95749 0.91865 0.85988 0.88473 0.90234 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.21 71.24 0.73 -0.07 16 2 C 0.19 3.26 6.82 42.46 0.29 3.55 16 3 C -0.25 -4.23 9.72 22.58 0.22 -4.01 16 4 C 0.39 9.50 7.45 133.02 0.99 10.49 16 5 N -0.62 -14.80 5.37 -309.33 -1.66 -16.46 16 6 C 0.50 15.64 7.70 87.25 0.67 16.31 16 7 O -0.45 -16.44 11.49 -3.23 -0.04 -16.47 16 8 C 0.51 16.78 7.73 87.25 0.67 17.45 16 9 O -0.54 -17.92 15.93 -3.27 -0.05 -17.98 16 10 N -0.57 -20.32 2.98 -820.47 -2.45 -22.76 16 11 C 0.11 3.82 6.44 86.36 0.56 4.38 16 12 C -0.11 -4.51 5.30 30.67 0.16 -4.35 16 13 C 0.04 2.05 2.06 -11.51 -0.02 2.03 16 14 C -0.53 -28.89 8.56 25.60 0.22 -28.67 16 15 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 16 C 0.01 0.74 5.30 84.66 0.45 1.19 16 17 N -0.91 -52.03 11.31 21.45 0.24 -51.78 16 18 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 C -0.11 -5.32 5.15 30.67 0.16 -5.16 16 23 C 0.08 3.34 5.97 86.35 0.52 3.85 16 24 N -0.55 -16.46 7.95 -185.26 -1.47 -17.94 16 25 C 0.33 8.60 7.64 138.77 1.06 9.67 16 26 C -0.08 -1.65 10.32 71.24 0.74 -0.91 16 27 N -0.55 -12.52 10.27 -176.23 -1.81 -14.33 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.11 0.35 8.09 -2.39 -0.02 0.33 16 31 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.44 7.76 8.20 -92.71 -0.76 7.00 16 33 H 0.10 3.06 7.01 -2.39 -0.02 3.04 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 39 H 0.08 4.12 6.03 -2.39 -0.01 4.11 16 40 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.12 4.89 4.33 -46.97 -0.20 4.69 16 43 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -69.78 369.86 2.27 -67.50 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.08 Total: 18.96 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 7.41 Total: 25.74 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -7.15 Total: -123.27 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.09 Total: -34.45 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -69.78 2.27 -67.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602036538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.222 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds