Wall clock time and date at job start Tue Mar 31 2020 16:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38534 * 120.82050 * 2 1 4 4 C 1.38241 * 119.24125 * 179.97438 * 3 2 1 5 5 N 1.31890 * 120.93648 * 0.02767 * 4 3 2 6 6 C 1.31785 * 121.80028 * 359.67187 * 5 4 3 7 7 C 1.38948 * 120.65251 * 0.59646 * 6 5 4 8 8 N 1.39747 * 120.49261 * 179.72778 * 7 6 5 9 9 C 1.34777 * 120.00199 * 341.49192 * 8 7 6 10 10 O 1.21381 * 119.99712 * 352.19154 * 9 8 7 11 11 C 1.49346 * 120.00248 * 172.19266 * 9 8 7 12 12 O 1.21360 * 120.00264 * 354.02742 * 11 9 8 13 13 N 1.34773 * 120.00123 * 174.02316 * 11 9 8 14 14 C 1.47082 * 120.88465 * 171.79230 * 13 11 9 15 15 C 1.53694 * 108.28075 * 128.75358 * 14 13 11 16 16 N 1.46901 * 109.25732 * 54.08340 * 15 14 13 17 17 C 1.46899 * 111.00222 * 172.60899 * 16 15 14 18 18 C 1.50699 * 109.47151 * 294.30392 * 17 16 15 19 19 H 1.08006 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00063 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99804 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47445 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47302 * 120.00071 * 22 20 18 25 25 H 1.48505 * 109.46953 * 239.99774 * 22 20 18 26 26 C 1.46901 * 111.26714 * 296.75858 * 16 15 14 27 27 C 1.47079 * 120.88406 * 352.07030 * 13 11 9 28 28 H 1.08993 * 109.47353 * 270.01579 * 1 2 3 29 29 H 1.09003 * 109.47111 * 30.02724 * 1 2 3 30 30 H 1.09009 * 109.46827 * 150.01989 * 1 2 3 31 31 H 1.07996 * 120.37459 * 359.95764 * 3 2 1 32 32 H 1.08001 * 119.52932 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.67039 * 180.31169 * 6 5 4 34 34 H 0.96998 * 119.99956 * 161.76815 * 8 7 6 35 35 H 1.08997 * 109.62824 * 248.52814 * 14 13 11 36 36 H 1.09007 * 109.62689 * 9.10235 * 14 13 11 37 37 H 1.09003 * 109.64556 * 294.08539 * 15 14 13 38 38 H 1.08998 * 109.42574 * 173.94941 * 15 14 13 39 39 H 1.09002 * 109.46714 * 54.30485 * 17 16 15 40 40 H 1.08997 * 109.47008 * 174.30311 * 17 16 15 41 41 H 0.97005 * 119.99639 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.49516 * 303.14276 * 26 16 15 43 43 H 1.09001 * 109.49308 * 183.06016 * 26 16 15 44 44 H 1.09008 * 109.62469 * 350.89437 * 27 13 11 45 45 H 1.08995 * 109.63368 * 111.47218 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1897 0.0000 4 6 3.5986 1.1516 0.0005 5 7 4.2452 0.0021 0.0005 6 6 3.6095 -1.1523 0.0064 7 6 2.2207 -1.1962 0.0004 8 7 1.5501 -2.4222 0.0010 9 6 2.1992 -3.5457 -0.3635 10 8 3.3192 -3.4764 -0.8264 11 6 1.5407 -4.8759 -0.1980 12 8 0.4676 -4.9561 0.3633 13 7 2.1380 -5.9872 -0.6719 14 6 1.6009 -7.3219 -0.3660 15 6 1.4456 -8.0932 -1.6862 16 7 2.7277 -8.0897 -2.4031 17 6 2.6731 -8.9619 -3.5839 18 6 2.5040 -10.3932 -3.1437 19 1 2.4436 -10.6311 -2.0919 20 6 2.4275 -11.3991 -4.0836 21 7 2.5015 -11.1093 -5.3643 22 14 2.2171 -13.1731 -3.5379 23 1 2.1607 -13.2317 -2.0552 24 1 0.9572 -13.7190 -4.1036 25 1 3.3668 -13.9793 -4.0213 26 6 3.1269 -6.7255 -2.7743 27 6 3.3476 -5.8979 -1.5037 28 1 -0.3634 0.0003 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8903 -0.5136 31 1 1.6964 2.1360 -0.0007 32 1 4.1566 2.0763 0.0001 33 1 4.1736 -2.0732 0.0112 34 1 0.6162 -2.4641 0.2598 35 1 2.2895 -7.8515 0.2923 36 1 0.6294 -7.2234 0.1186 37 1 0.6832 -7.6159 -2.3020 38 1 1.1508 -9.1208 -1.4732 39 1 1.8296 -8.6724 -4.2107 40 1 3.5983 -8.8633 -4.1516 41 1 2.4480 -11.8171 -6.0255 42 1 2.3412 -6.2673 -3.3750 43 1 4.0516 -6.7612 -3.3504 44 1 3.5316 -4.8575 -1.7718 45 1 4.2009 -6.2933 -0.9527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602078043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:56 Heat of formation + Delta-G solvation = 3.800413 kcal Electronic energy + Delta-G solvation = -28183.883146 eV Core-core repulsion = 24202.624350 eV Total energy + Delta-G solvation = -3981.258795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73607 -40.38025 -38.89318 -37.74242 -36.07307 -34.51046 -33.70373 -32.43382 -30.91810 -30.58410 -28.63655 -28.22655 -26.14839 -25.02754 -23.83404 -22.94750 -22.39433 -21.79559 -20.84849 -19.65103 -18.18937 -17.84778 -17.01569 -16.56291 -16.50172 -16.40502 -16.08146 -15.26275 -14.91936 -14.83205 -14.64287 -14.42730 -14.29341 -14.02809 -13.81631 -13.59254 -13.48639 -13.28789 -13.15470 -12.95733 -12.54155 -12.16899 -11.97247 -11.61664 -11.45535 -11.31580 -11.11290 -10.88969 -10.80485 -10.64208 -10.61341 -9.95542 -9.86085 -9.77159 -9.45656 -9.21952 -8.71651 -8.61188 -8.48917 -7.37462 -6.08354 -4.10370 0.49390 0.84183 1.32212 1.94567 2.87923 3.18649 3.27799 3.35597 3.39730 3.49528 3.95772 4.20863 4.27067 4.31107 4.37527 4.55403 4.75839 4.84073 5.00000 5.03692 5.20101 5.26233 5.27775 5.35486 5.39171 5.51223 5.57554 5.62778 5.69989 5.74523 5.76188 5.81989 6.08335 6.21756 6.31929 6.39847 6.42972 6.49953 6.62351 7.14050 7.18683 7.24618 7.31777 7.69041 7.71676 7.73803 7.97900 8.08368 8.44365 8.97018 9.54380 11.02471 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.002242 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.527477 B =12487.805504 C =12908.838292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C -0.152 4.152 4 C 0.078 3.922 5 N -0.465 5.465 6 C 0.089 3.911 7 C 0.094 3.906 8 N -0.636 5.636 9 C 0.511 3.489 10 O -0.483 6.483 11 C 0.506 3.494 12 O -0.529 6.529 13 N -0.566 5.566 14 C 0.110 3.890 15 C 0.052 3.948 16 N -0.537 5.537 17 C 0.193 3.807 18 C -0.509 4.509 19 H 0.065 0.935 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.040 3.960 27 C 0.077 3.923 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.424 0.576 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.100 0.900 39 H -0.009 1.009 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.025 0.975 43 H 0.085 0.915 44 H 0.129 0.871 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.235 23.918 11.781 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.084 4.084 3 C -0.172 4.172 4 C -0.079 4.079 5 N -0.174 5.174 6 C -0.070 4.070 7 C -0.003 4.003 8 N -0.282 5.282 9 C 0.295 3.705 10 O -0.358 6.358 11 C 0.287 3.713 12 O -0.407 6.407 13 N -0.299 5.299 14 C -0.011 4.011 15 C -0.077 4.077 16 N -0.262 5.262 17 C 0.068 3.932 18 C -0.548 4.548 19 H 0.083 0.917 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.090 4.090 27 C -0.044 4.044 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.175 0.825 33 H 0.201 0.799 34 H 0.263 0.737 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.119 0.881 39 H 0.009 0.991 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.103 0.897 44 H 0.146 0.854 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.751 23.536 11.885 26.425 hybrid contribution -2.076 -0.728 -0.418 2.240 sum -3.827 22.808 11.467 25.814 Atomic orbital electron populations 1.20805 0.89809 1.03833 1.03251 1.20076 0.96898 0.91499 0.99899 1.21887 0.95429 0.97922 1.01993 1.22808 0.91742 0.96580 0.96740 1.67827 1.40408 0.98062 1.11114 1.23578 0.89833 0.97772 0.95827 1.18824 0.93521 0.84875 1.03087 1.43163 1.15991 1.04591 1.64406 1.20630 0.86342 0.85802 0.77694 1.90499 1.19068 1.85795 1.40435 1.19560 0.85500 0.84824 0.81380 1.90760 1.20071 1.86159 1.43717 1.48181 1.28251 1.05614 1.47814 1.22213 1.00205 0.80028 0.98668 1.22416 0.91321 1.01079 0.92923 1.62123 1.28712 1.07220 1.28157 1.19737 0.96430 0.91231 0.85769 1.21173 1.49491 0.90792 0.93348 0.91721 1.25002 0.95398 0.99396 0.94837 1.69968 1.50639 1.32908 1.00151 0.86433 0.77612 0.84488 0.78830 1.19617 1.21119 1.20990 1.22449 1.00897 0.90459 0.95155 1.23000 0.85619 1.04342 0.91433 0.90087 0.90177 0.91178 0.84312 0.82549 0.79914 0.73716 0.89938 0.88978 0.95537 0.88142 0.99089 0.94933 0.92909 0.95658 0.89702 0.85359 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 9.54 36.00 0.34 -0.27 16 2 C -0.07 -0.58 5.93 -104.12 -0.62 -1.19 16 3 C -0.15 -1.06 9.81 -39.47 -0.39 -1.44 16 4 C 0.08 0.66 11.17 -17.53 -0.20 0.47 16 5 N -0.47 -5.34 10.35 -13.07 -0.14 -5.48 16 6 C 0.09 1.04 9.96 -17.31 -0.17 0.87 16 7 C 0.09 0.95 6.51 -83.59 -0.54 0.40 16 8 N -0.64 -6.27 5.12 -10.20 -0.05 -6.33 16 9 C 0.51 6.18 7.58 -11.63 -0.09 6.09 16 10 O -0.48 -6.34 10.13 5.47 0.06 -6.28 16 11 C 0.51 7.00 7.74 -11.64 -0.09 6.91 16 12 O -0.53 -7.98 15.99 5.49 0.09 -7.89 16 13 N -0.57 -8.34 3.00 -172.72 -0.52 -8.85 16 14 C 0.11 1.68 6.65 -3.36 -0.02 1.66 16 15 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 16 N -0.54 -11.04 4.62 -235.46 -1.09 -12.13 16 17 C 0.19 4.87 4.72 -4.98 -0.02 4.85 16 18 C -0.51 -13.83 8.41 -34.44 -0.29 -14.12 16 19 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 20 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 22 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 27 C 0.08 1.13 6.11 -3.60 -0.02 1.11 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.31 8.10 -51.93 -0.42 -0.12 16 30 H 0.07 0.37 6.98 -51.92 -0.36 0.00 16 31 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.18 2.28 5.43 -52.49 -0.29 2.00 16 34 H 0.42 3.48 6.79 -40.82 -0.28 3.21 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.33 7.05 -51.92 -0.37 0.97 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 39 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 40 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 44 H 0.13 1.78 4.42 -54.37 -0.24 1.54 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -31.75 365.83 -8.69 -40.44 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.02 Total: 1.96 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.25 Total: 8.36 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -1.06 Total: -58.28 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.14 Total: -14.17 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.75 -8.69 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602078043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.239 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds