Wall clock time and date at job start Tue Mar 31 2020 16:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 119.99686 * 2 1 4 4 O 1.21277 * 120.00576 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00150 * 180.02562 * 3 2 1 6 6 C 1.53002 * 110.30258 * 300.70322 * 5 3 2 7 7 C 1.54277 * 110.34847 * 178.52676 * 5 3 2 8 8 C 1.54386 * 104.96387 * 241.02542 * 7 5 3 9 9 N 1.48154 * 104.61705 * 23.86279 * 8 7 5 10 10 C 1.34768 * 127.83713 * 140.39559 * 9 8 7 11 11 O 1.21583 * 119.99874 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00169 * 359.97438 * 10 9 8 13 13 C 1.39254 * 120.00094 * 174.85799 * 12 10 9 14 14 C 1.39678 * 119.57477 * 185.40855 * 13 12 10 15 15 C 1.38651 * 119.49416 * 179.75072 * 14 13 12 16 16 C 1.38355 * 118.66966 * 0.51829 * 15 14 13 17 17 C 1.40578 * 119.12894 * 359.72277 * 16 15 14 18 18 C 1.41330 * 119.78271 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00898 * 0.02562 * 18 17 16 20 20 C 1.40033 * 119.99766 * 180.02562 * 18 17 16 21 21 N 1.30739 * 119.99884 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47259 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46848 * 120.00380 * 22 20 18 25 25 H 1.48502 * 109.47303 * 239.99967 * 22 20 18 26 26 N 1.31904 * 119.57391 * 5.68057 * 13 12 10 27 27 C 1.48145 * 104.32146 * 320.41976 * 9 8 7 28 28 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47234 * 299.99557 * 1 2 3 30 30 H 1.08996 * 109.47567 * 59.99424 * 1 2 3 31 31 H 0.96993 * 120.00225 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47279 * 297.82420 * 6 5 3 33 33 H 1.09000 * 109.47317 * 177.81972 * 6 5 3 34 34 H 1.09005 * 109.47275 * 57.82448 * 6 5 3 35 35 H 1.09004 * 110.33930 * 359.89434 * 7 5 3 36 36 H 1.08999 * 110.34597 * 122.15332 * 7 5 3 37 37 H 1.08995 * 110.41024 * 142.65028 * 8 7 5 38 38 H 1.09001 * 110.40608 * 264.96382 * 8 7 5 39 39 H 0.96998 * 120.00336 * 354.86043 * 12 10 9 40 40 H 1.08000 * 120.25414 * 359.97438 * 14 13 12 41 41 H 1.07998 * 120.66620 * 180.24379 * 15 14 13 42 42 H 1.08001 * 120.43586 * 179.75509 * 16 15 14 43 43 H 0.97002 * 120.00216 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.40459 * 280.79701 * 27 9 8 45 45 H 1.08999 * 110.40943 * 158.36992 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1772 0.4344 1.2329 7 6 4.1822 2.6134 -0.0377 8 6 4.9977 2.7027 -1.3455 9 7 4.4327 1.6418 -2.2116 10 6 4.1976 1.6950 -3.5375 11 8 3.7262 0.7318 -4.1105 12 7 4.4850 2.8159 -4.2285 13 6 4.3432 2.8357 -5.6136 14 6 4.7503 3.9621 -6.3323 15 6 4.6132 3.9779 -7.7119 16 6 4.0631 2.8729 -8.3370 17 6 3.6679 1.7719 -7.5575 18 6 3.1049 0.6357 -8.1817 19 1 2.9799 0.6151 -9.2542 20 6 2.7092 -0.4634 -7.4095 21 7 2.8601 -0.4383 -6.1111 22 14 1.9644 -1.9648 -8.2345 23 1 1.9022 -1.7437 -9.7015 24 1 2.8056 -3.1547 -7.9488 25 1 0.5939 -2.1897 -7.7087 26 7 3.8212 1.7926 -6.2296 27 6 4.1843 0.5094 -1.2893 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 3.8538 0.9566 2.1332 33 1 5.2664 0.4088 1.1991 34 1 3.7901 -0.5845 1.2449 35 1 3.3555 3.3237 -0.0573 36 1 4.8242 2.8017 0.8228 37 1 4.8676 3.6808 -1.8086 38 1 6.0530 2.5135 -1.1490 39 1 4.7906 3.6089 -3.7609 40 1 5.1721 4.8128 -5.8177 41 1 4.9254 4.8373 -8.2867 42 1 3.9395 2.8563 -9.4098 43 1 2.5856 -1.1994 -5.5761 44 1 5.1122 -0.0244 -1.0844 45 1 3.4405 -0.1673 -1.7099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881148522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:17 Heat of formation + Delta-G solvation = 8.917416 kcal Electronic energy + Delta-G solvation = -29381.898124 eV Core-core repulsion = 25400.861218 eV Total energy + Delta-G solvation = -3981.036905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.69248 -39.26421 -37.94275 -36.69740 -34.73538 -34.04072 -33.06246 -32.65485 -30.25268 -29.57648 -28.98077 -27.02649 -26.42134 -25.37247 -23.87656 -21.94272 -21.72231 -21.10641 -19.59561 -19.12782 -18.13792 -17.37571 -16.63381 -16.10996 -15.99939 -15.69473 -14.97429 -14.75126 -14.49480 -14.38175 -14.19574 -13.88304 -13.55787 -13.27913 -13.18103 -12.97507 -12.81592 -12.51024 -12.43678 -12.28684 -12.08030 -11.89847 -11.83046 -11.47552 -11.15133 -11.13441 -10.90390 -10.77804 -10.59085 -10.42657 -9.87393 -9.83958 -9.66187 -9.20386 -9.10280 -8.99119 -8.22144 -7.90823 -7.17845 -6.89770 -6.07254 -4.34776 2.59977 2.86801 3.03887 3.12129 3.16641 3.19165 3.23059 3.30326 4.09755 4.14622 4.25781 4.44314 4.57888 4.65756 4.87162 4.98962 5.12059 5.14691 5.24230 5.32616 5.41394 5.48979 5.60558 5.68247 5.71346 5.73632 5.82209 5.86968 6.09441 6.10856 6.15086 6.31994 6.37616 6.55058 6.78285 6.85557 6.89536 7.26134 7.37421 7.45155 7.66557 7.79624 7.85992 8.16407 8.21152 8.32540 8.68007 8.83076 9.10603 9.59684 10.31326 10.53724 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.004176 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.816483 B = 6702.764219 C = 8311.115719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.531 3.469 4 O -0.534 6.534 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.122 4.122 8 C 0.103 3.897 9 N -0.649 5.649 10 C 0.690 3.310 11 O -0.458 6.458 12 N -0.669 5.669 13 C 0.387 3.613 14 C -0.357 4.357 15 C -0.035 4.035 16 C -0.307 4.307 17 C 0.272 3.728 18 C -0.426 4.426 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.649 5.649 22 Si 0.894 3.106 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.276 1.276 26 N -0.472 5.472 27 C 0.143 3.857 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.075 0.925 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -0.766 17.264 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.384 5.384 3 C 0.317 3.683 4 O -0.410 6.410 5 C -0.104 4.104 6 C -0.190 4.190 7 C -0.160 4.160 8 C -0.022 4.022 9 N -0.392 5.392 10 C 0.391 3.609 11 O -0.322 6.322 12 N -0.318 5.318 13 C 0.148 3.852 14 C -0.383 4.383 15 C -0.060 4.060 16 C -0.330 4.330 17 C 0.147 3.853 18 C -0.457 4.457 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.267 5.267 22 Si 0.718 3.282 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.202 1.202 26 N -0.190 5.190 27 C 0.018 3.982 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.235 0.765 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.228 0.772 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.196 -1.674 17.341 17.463 hybrid contribution 0.334 0.202 -0.481 0.620 sum 1.530 -1.472 16.860 16.994 Atomic orbital electron populations 1.21528 0.79549 1.02196 1.02304 1.45708 1.07796 1.08714 1.76203 1.20286 0.89609 0.83540 0.74900 1.90666 1.69995 1.31333 1.49031 1.21773 0.92007 0.98930 0.97723 1.21816 1.01927 0.99796 0.95503 1.22641 1.00815 0.94928 0.97662 1.22249 0.97041 0.92380 0.90492 1.48287 1.69239 1.15826 1.05866 1.15876 0.80943 0.84953 0.79125 1.91389 1.43036 1.33506 1.64247 1.42536 1.70020 1.13525 1.05694 1.18339 0.93140 0.91635 0.82134 1.20430 1.22997 1.00167 0.94679 1.20540 0.95748 0.96357 0.93317 1.21624 1.14902 0.97575 0.98871 1.18391 0.88792 0.91412 0.86738 1.19601 1.33722 0.97751 0.94576 0.89953 1.26197 0.96257 0.99734 0.95067 1.70369 1.25375 1.27108 1.03895 0.86493 0.79150 0.81845 0.80681 1.18596 1.20129 1.20158 1.68675 1.18540 1.22337 1.09478 1.22011 1.00710 0.89427 0.86087 0.90688 0.92414 0.92043 0.76480 0.91730 0.90848 0.91990 0.88705 0.90050 0.90934 0.91529 0.77178 0.89163 0.88599 0.88578 0.91849 0.90680 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.70 59.85 0.64 1.54 16 2 N -0.73 -8.01 5.33 -67.08 -0.36 -8.37 16 3 C 0.53 7.22 6.47 -10.98 -0.07 7.14 16 4 O -0.53 -9.39 15.26 5.56 0.08 -9.31 16 5 C -0.10 -1.08 0.86 -154.26 -0.13 -1.21 16 6 C -0.13 -0.92 8.17 37.16 0.30 -0.62 16 7 C -0.12 -1.31 6.24 -25.34 -0.16 -1.47 16 8 C 0.10 1.21 6.94 -2.41 -0.02 1.20 16 9 N -0.65 -10.58 3.32 -175.02 -0.58 -11.16 16 10 C 0.69 15.17 8.53 -86.92 -0.74 14.43 16 11 O -0.46 -12.16 12.37 5.29 0.07 -12.10 16 12 N -0.67 -14.33 5.36 -15.79 -0.08 -14.41 16 13 C 0.39 9.90 7.43 -154.99 -1.15 8.75 16 14 C -0.36 -8.33 9.95 -38.89 -0.39 -8.71 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16 17 C 0.27 7.85 6.55 -85.00 -0.56 7.29 16 18 C -0.43 -11.99 9.14 -37.73 -0.34 -12.34 16 19 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 20 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 21 N -0.65 -18.41 8.99 55.55 0.50 -17.91 16 22 Si 0.89 19.57 29.56 -169.99 -5.02 14.55 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 N -0.47 -13.72 5.74 -10.26 -0.06 -13.78 16 27 C 0.14 1.87 6.12 -2.41 -0.01 1.85 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.40 3.27 8.14 -40.82 -0.33 2.94 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.06 0.35 7.54 -51.93 -0.39 -0.04 16 35 H 0.09 1.26 6.46 -51.93 -0.34 0.92 16 36 H 0.08 0.64 7.71 -51.93 -0.40 0.24 16 37 H 0.07 0.83 6.82 -51.93 -0.35 0.47 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.39 6.80 7.08 -40.82 -0.29 6.51 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 44 H 0.08 0.83 7.83 -51.93 -0.41 0.42 16 45 H 0.08 1.27 7.29 -51.93 -0.38 0.89 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -37.34 367.82 -9.66 -47.00 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.24 Total: 10.19 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -3.51 Total: 9.75 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -0.58 Total: -65.63 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.15 Total: -21.41 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.34 -9.66 -47.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.917 kcal (2) G-P(sol) polarization free energy of solvation -37.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds