Wall clock time and date at job start Tue Mar 31 2020 17:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38042 * 126.28908 * 2 1 4 4 C 1.47433 * 126.41632 * 0.02562 * 3 2 1 5 5 O 1.21611 * 119.99768 * 327.77903 * 4 3 2 6 6 N 1.34770 * 120.00443 * 147.77558 * 4 3 2 7 7 C 1.47265 * 121.35878 * 175.15992 * 6 4 3 8 8 C 1.52985 * 108.18976 * 118.21984 * 7 6 4 9 9 N 1.45658 * 110.77181 * 46.73001 * 8 7 6 10 10 C 1.46500 * 117.70675 * 158.09807 * 9 8 7 11 11 C 1.53001 * 117.49655 * 7.36110 * 10 9 8 12 12 C 1.53001 * 117.49616 * 298.74052 * 10 9 8 13 13 C 1.33378 * 124.58754 * 338.12031 * 9 8 7 14 14 O 1.21280 * 118.48665 * 184.29818 * 13 9 8 15 15 C 1.47051 * 121.34894 * 354.87588 * 6 4 3 16 16 C 1.41289 * 107.17171 * 179.75995 * 3 2 1 17 17 N 1.30448 * 108.02365 * 0.24370 * 16 3 2 18 18 N 1.34261 * 126.29490 * 180.18271 * 2 1 3 19 19 C 1.46501 * 125.75455 * 0.02758 * 18 2 1 20 20 C 1.50701 * 109.47160 * 270.27675 * 19 18 2 21 21 H 1.07994 * 119.99999 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99770 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00346 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99764 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47304 * 60.00075 * 24 22 20 26 26 H 1.48509 * 109.47080 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47279 * 300.00285 * 24 22 20 28 28 H 1.09003 * 109.47063 * 90.00482 * 1 2 3 29 29 H 1.09001 * 109.46846 * 209.99612 * 1 2 3 30 30 H 1.08999 * 109.47692 * 329.99677 * 1 2 3 31 31 H 1.08996 * 109.71945 * 237.89642 * 7 6 4 32 32 H 1.08998 * 109.71325 * 358.50418 * 7 6 4 33 33 H 1.09000 * 109.21653 * 167.06071 * 8 7 6 34 34 H 1.09000 * 109.22230 * 286.39695 * 8 7 6 35 35 H 1.08997 * 115.54855 * 153.06893 * 10 9 8 36 36 H 1.08994 * 117.50031 * 0.02562 * 11 10 9 37 37 H 1.09003 * 117.49389 * 145.02050 * 11 10 9 38 38 H 1.08998 * 117.49343 * 214.97835 * 12 10 9 39 39 H 1.08999 * 117.50049 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.57025 * 342.83564 * 15 6 4 41 41 H 1.09004 * 109.56985 * 103.19230 * 15 6 4 42 42 H 1.07998 * 125.98906 * 180.23979 * 16 3 2 43 43 H 1.09004 * 109.46616 * 30.27645 * 19 18 2 44 44 H 1.08998 * 109.47452 * 150.27222 * 19 18 2 45 45 H 0.96997 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 0.0005 5 8 0.8540 2.8361 -0.5606 6 7 2.6283 3.4572 0.6228 7 6 2.2757 4.8853 0.5533 8 6 1.9843 5.3749 1.9731 9 7 3.0179 4.9268 2.8964 10 6 3.1849 5.6729 4.1461 11 6 2.1522 6.7555 4.4659 12 6 3.5680 7.1504 4.0410 13 6 3.8233 3.8852 2.6837 14 8 4.5935 3.5605 3.5625 15 6 3.8201 3.0942 1.4040 16 6 3.6590 0.6500 0.0057 17 7 3.6341 -0.6543 0.0035 18 7 2.3017 -1.0821 -0.0035 19 6 1.8502 -2.4758 -0.0085 20 6 1.6883 -2.9565 1.4106 21 1 1.9001 -2.2904 2.2338 22 6 1.2688 -4.2464 1.6578 23 7 1.0104 -5.0574 0.6553 24 14 1.0688 -4.8425 3.4168 25 1 0.0651 -3.9989 4.1144 26 1 0.6098 -6.2548 3.4117 27 1 2.3717 -4.7474 4.1229 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.1082 5.4496 0.1333 32 1 1.3912 5.0157 -0.0702 33 1 1.9479 6.4643 1.9766 34 1 1.0199 4.9834 2.2969 35 1 3.5943 5.1049 4.9815 36 1 1.3483 6.9124 3.7467 37 1 1.8819 6.9000 5.5120 38 1 4.2291 7.5546 4.8075 39 1 3.6962 7.5672 3.0420 40 1 3.7959 2.0287 1.6332 41 1 4.7173 3.3255 0.8299 42 1 4.5448 1.2678 0.0108 43 1 0.8941 -2.5460 -0.5272 44 1 2.5874 -3.0948 -0.5199 45 1 0.7149 -5.9648 0.8293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889353040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:20 Heat of formation + Delta-G solvation = 47.723726 kcal Electronic energy + Delta-G solvation = -28803.110196 eV Core-core repulsion = 24823.756059 eV Total energy + Delta-G solvation = -3979.354137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26364 -40.60462 -38.86990 -37.61406 -36.09752 -34.05504 -33.44402 -32.12534 -31.35957 -30.31138 -27.98478 -27.29419 -26.61812 -24.47735 -23.33846 -22.76285 -22.55813 -21.51734 -20.12029 -19.23669 -18.40935 -17.57058 -17.26025 -16.86313 -16.49554 -16.08620 -15.70180 -15.28963 -15.15790 -14.72554 -14.61822 -14.24084 -14.23861 -13.99782 -13.33223 -13.07547 -13.01751 -12.63028 -12.57796 -12.42307 -12.28493 -12.06278 -11.89458 -11.80528 -11.74927 -11.53260 -11.28628 -11.15258 -10.90573 -10.86675 -10.51152 -10.35671 -10.23948 -9.96734 -9.55402 -8.93294 -8.75405 -8.72470 -8.62529 -7.98364 -6.35317 -4.43751 2.09925 2.30889 2.46304 2.71246 2.82019 3.19366 3.23566 3.24933 3.35124 3.48165 3.59867 4.14551 4.23049 4.32783 4.41264 4.53048 4.61008 4.71814 4.83336 4.97364 5.02992 5.05269 5.13609 5.22370 5.25254 5.33013 5.43683 5.50653 5.53861 5.61994 5.64648 5.67247 5.82409 6.01975 6.04789 6.26177 6.34016 6.48904 6.72957 6.87168 7.09285 7.12205 7.28270 7.53076 7.73590 7.75069 7.87446 8.27701 8.36225 8.61677 9.23592 10.72747 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003107 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.177592 B = 9010.803887 C = 9842.964886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.163 3.837 3 C -0.335 4.335 4 C 0.615 3.385 5 O -0.543 6.543 6 N -0.622 5.622 7 C 0.102 3.898 8 C 0.096 3.904 9 N -0.576 5.576 10 C 0.072 3.928 11 C -0.186 4.186 12 C -0.190 4.190 13 C 0.515 3.485 14 O -0.539 6.539 15 C 0.096 3.904 16 C 0.052 3.948 17 N -0.290 5.290 18 N -0.311 5.311 19 C 0.251 3.749 20 C -0.543 4.543 21 H 0.065 0.935 22 C 0.069 3.931 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.105 0.895 42 H 0.179 0.821 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 23.265 1.737 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.026 3.974 3 C -0.351 4.351 4 C 0.407 3.593 5 O -0.421 6.421 6 N -0.358 5.358 7 C -0.021 4.021 8 C -0.028 4.028 9 N -0.307 5.307 10 C -0.033 4.033 11 C -0.224 4.224 12 C -0.229 4.229 13 C 0.303 3.697 14 O -0.415 6.415 15 C -0.030 4.030 16 C -0.135 4.135 17 N -0.110 5.110 18 N -0.088 5.088 19 C 0.134 3.866 20 C -0.581 4.581 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.151 0.849 41 H 0.122 0.878 42 H 0.195 0.805 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.853 21.724 1.780 21.875 hybrid contribution -0.443 0.416 0.943 1.122 sum 1.410 22.140 2.724 22.351 Atomic orbital electron populations 1.20502 0.86913 1.04142 1.03496 1.21389 0.94846 0.86454 0.94687 1.19574 0.93443 0.92147 1.29896 1.17352 0.81831 0.83824 0.76258 1.90721 1.24087 1.81790 1.45480 1.47950 1.28505 1.06578 1.52762 1.21881 1.03516 0.81069 0.95678 1.21866 0.91293 1.00241 0.89360 1.46719 1.35111 1.29759 1.19156 1.21744 1.03975 0.88091 0.89446 1.23393 0.93232 1.02519 1.03241 1.23373 0.98089 0.98162 1.03270 1.20412 0.79873 0.79823 0.89596 1.90757 1.39703 1.67378 1.43646 1.22193 0.89588 1.02426 0.88749 1.23865 0.96239 0.92620 1.00749 1.77177 0.98586 1.12111 1.23112 1.49391 1.02425 1.08315 1.48663 1.19872 0.96469 0.70810 0.99448 1.21213 1.47696 0.98217 0.90982 0.91666 1.24916 0.94396 0.95967 0.98278 1.69902 1.44313 1.07295 1.31115 0.86388 0.78953 0.77770 0.83469 1.19864 1.20851 1.19815 0.90017 0.89621 0.90042 0.90454 0.86748 0.89492 0.90804 0.84626 0.88048 0.87756 0.87961 0.88543 0.84857 0.87777 0.80459 0.92517 0.92392 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.26 36.01 0.33 -1.26 16 2 C 0.16 3.22 7.00 -81.60 -0.57 2.65 16 3 C -0.34 -5.93 5.43 -105.07 -0.57 -6.50 16 4 C 0.62 9.65 7.47 -12.52 -0.09 9.56 16 5 O -0.54 -9.54 15.44 5.27 0.08 -9.46 16 6 N -0.62 -7.50 2.98 -175.42 -0.52 -8.03 16 7 C 0.10 0.89 6.52 -3.63 -0.02 0.86 16 8 C 0.10 0.76 5.53 -4.50 -0.02 0.74 16 9 N -0.58 -5.99 3.14 -167.29 -0.53 -6.52 16 10 C 0.07 0.67 6.04 -67.93 -0.41 0.26 16 11 C -0.19 -1.21 9.67 -26.73 -0.26 -1.47 16 12 C -0.19 -1.30 10.06 -26.73 -0.27 -1.57 16 13 C 0.52 6.66 7.58 -11.73 -0.09 6.57 16 14 O -0.54 -8.78 16.33 5.56 0.09 -8.69 16 15 C 0.10 1.12 5.08 -5.02 -0.03 1.10 16 16 C 0.05 0.89 9.65 -16.98 -0.16 0.73 16 17 N -0.29 -6.15 12.50 30.86 0.39 -5.76 16 18 N -0.31 -6.90 3.56 -57.77 -0.21 -7.10 16 19 C 0.25 6.16 5.78 -5.19 -0.03 6.13 16 20 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 21 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 22 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 23 N -0.89 -24.39 13.29 55.43 0.74 -23.66 16 24 Si 0.91 20.73 29.54 -169.99 -5.02 15.70 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 30 H 0.08 1.32 7.47 -51.93 -0.39 0.93 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.11 1.03 7.08 -51.93 -0.37 0.67 16 33 H 0.09 0.47 6.30 -51.93 -0.33 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.14 1.48 7.40 -51.93 -0.38 1.10 16 36 H 0.10 0.57 6.41 -51.93 -0.33 0.24 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.61 7.97 -51.93 -0.41 0.19 16 40 H 0.13 1.82 5.14 -51.93 -0.27 1.55 16 41 H 0.10 0.94 7.98 -51.93 -0.41 0.52 16 42 H 0.18 2.30 6.64 -52.49 -0.35 1.95 16 43 H 0.06 1.38 7.64 -51.93 -0.40 0.98 16 44 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -32.47 370.74 -8.13 -40.60 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.12 Total: 2.56 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.62 Total: 4.77 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.13 Total: -51.07 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.17 Total: -18.15 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.47 -8.13 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889353040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.327 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds