Wall clock time and date at job start Tue Mar 31 2020 17:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39864 * 125.89715 * 2 1 4 4 C 1.35315 * 107.91727 * 179.71644 * 3 2 1 5 5 C 1.50709 * 126.12810 * 180.26129 * 4 3 2 6 6 N 1.34948 * 107.74770 * 0.41874 * 4 3 2 7 7 C 1.46502 * 126.03805 * 179.84218 * 6 4 3 8 8 C 1.53003 * 109.47023 * 269.71526 * 7 6 4 9 9 O 1.45200 * 109.46730 * 180.02562 * 8 7 6 10 10 C 1.34756 * 116.99417 * 180.02562 * 9 8 7 11 11 O 1.21520 * 120.00292 * 359.97438 * 10 9 8 12 12 C 1.47291 * 119.99648 * 180.02562 * 10 9 8 13 13 C 1.41344 * 126.42578 * 0.03822 * 12 10 9 14 14 N 1.30427 * 108.01038 * 179.68626 * 13 12 10 15 15 N 1.39939 * 108.92113 * 0.44175 * 14 13 12 16 16 C 1.46491 * 125.74450 * 179.81281 * 15 14 13 17 17 C 1.50702 * 109.46957 * 269.69080 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.34222 * 108.50592 * 359.54733 * 15 14 13 26 26 C 1.50707 * 126.29232 * 180.23890 * 25 15 14 27 27 N 1.30833 * 125.89595 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47394 * 270.00923 * 1 2 3 29 29 H 1.09004 * 109.47173 * 30.00438 * 1 2 3 30 30 H 1.08994 * 109.47312 * 150.00212 * 1 2 3 31 31 H 1.07999 * 126.04433 * 359.96862 * 3 2 1 32 32 H 1.08995 * 109.46882 * 270.18646 * 5 4 3 33 33 H 1.09004 * 109.46899 * 30.18573 * 5 4 3 34 34 H 1.09002 * 109.47157 * 150.18091 * 5 4 3 35 35 H 1.09001 * 109.47042 * 149.71324 * 7 6 4 36 36 H 1.08997 * 109.46752 * 29.71692 * 7 6 4 37 37 H 1.08996 * 109.46514 * 60.00074 * 8 7 6 38 38 H 1.08996 * 109.46848 * 300.00102 * 8 7 6 39 39 H 1.08000 * 125.99491 * 359.96182 * 13 12 10 40 40 H 1.09004 * 109.47166 * 149.69346 * 16 15 14 41 41 H 1.08994 * 109.47507 * 29.69052 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.46792 * 89.99868 * 26 25 15 44 44 H 1.08995 * 109.47272 * 209.99987 * 26 25 15 45 45 H 1.08999 * 109.47175 * 330.00300 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0064 5 6 4.8351 1.5989 0.0143 6 7 3.6087 -0.6341 0.0009 7 6 4.7899 -1.5008 0.0015 8 6 5.2019 -1.8024 -1.4408 9 8 6.3722 -2.6619 -1.4401 10 6 6.8664 -3.0233 -2.6406 11 8 6.3336 -2.6314 -3.6600 12 6 8.0516 -3.8944 -2.7170 13 6 8.7733 -4.4274 -1.6248 14 7 9.7483 -5.1514 -2.1005 15 7 9.7046 -5.1091 -3.4986 16 6 10.6325 -5.7902 -4.4047 17 6 11.7927 -4.8793 -4.7134 18 1 11.8349 -3.8919 -4.2778 19 6 12.8036 -5.3087 -5.5470 20 7 12.7525 -6.5111 -6.0772 21 14 14.2455 -4.1824 -5.9235 22 1 14.0666 -2.8933 -5.2082 23 1 15.5065 -4.8259 -5.4751 24 1 14.3100 -3.9327 -7.3859 25 6 8.6659 -4.3443 -3.8694 26 6 8.2472 -4.0330 -5.2833 27 7 2.2741 -1.0599 0.0005 28 1 -0.3634 0.0002 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 1.9923 2.1598 -0.0005 32 1 5.1330 1.8160 -1.0115 33 1 4.6058 2.5308 0.5311 34 1 5.6494 1.0888 0.5290 35 1 4.5560 -2.4333 0.5152 36 1 5.6090 -0.9982 0.5159 37 1 5.4357 -0.8699 -1.9543 38 1 4.3827 -2.3050 -1.9551 39 1 8.5531 -4.2672 -0.5797 40 1 10.1153 -6.0459 -5.3296 41 1 11.0010 -6.7000 -3.9310 42 1 13.4635 -6.8131 -6.6640 43 1 7.5374 -4.7858 -5.6261 44 1 7.7778 -3.0498 -5.3151 45 1 9.1236 -4.0383 -5.9313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892583413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:22 Heat of formation + Delta-G solvation = 49.219621 kcal Electronic energy + Delta-G solvation = -27112.622503 eV Core-core repulsion = 23133.333233 eV Total energy + Delta-G solvation = -3979.289271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59108 -40.95625 -39.70581 -36.47942 -34.69917 -33.97391 -32.54668 -32.19328 -31.35843 -30.67136 -28.11135 -27.37781 -27.09767 -26.72913 -23.95577 -23.25032 -22.23886 -20.71812 -20.43509 -19.55293 -18.96585 -17.59119 -16.88407 -16.67338 -16.50988 -16.48501 -15.55066 -15.08574 -14.85466 -14.54857 -14.33666 -14.15236 -13.79401 -13.62231 -13.51576 -13.32775 -13.28245 -12.85914 -12.76537 -12.60755 -12.59920 -12.22034 -12.16582 -12.01252 -11.90326 -11.88087 -11.59967 -11.16730 -10.96850 -10.78826 -10.61638 -10.49962 -10.36604 -9.98757 -9.90644 -9.36322 -8.78682 -8.77429 -8.70384 -8.14763 -6.39706 -4.48053 1.51054 1.82991 1.93791 2.50295 2.64606 2.88858 3.13112 3.21436 3.25364 3.37402 3.58475 4.15464 4.19292 4.28980 4.45382 4.58834 4.69371 4.86662 4.94578 5.03613 5.06409 5.10432 5.14209 5.21488 5.29595 5.31737 5.37443 5.41805 5.50856 5.56639 5.60871 5.64638 5.88530 5.93034 5.95802 6.27268 6.39338 6.42164 6.60516 6.69974 6.72340 6.82371 7.07073 7.47304 7.48019 7.65907 7.69942 8.05901 8.27765 8.57709 9.19400 10.68515 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.001959 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.660184 B =14286.057415 C =14550.377332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.073 3.927 3 C -0.273 4.273 4 C 0.089 3.911 5 C -0.097 4.097 6 N -0.368 5.368 7 C 0.135 3.865 8 C 0.057 3.943 9 O -0.354 6.354 10 C 0.554 3.446 11 O -0.526 6.526 12 C -0.319 4.319 13 C 0.081 3.919 14 N -0.296 5.296 15 N -0.309 5.309 16 C 0.249 3.751 17 C -0.542 4.542 18 H 0.067 0.933 19 C 0.068 3.932 20 N -0.888 5.888 21 Si 0.909 3.091 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C 0.175 3.825 26 C -0.102 4.102 27 N -0.293 5.293 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.185 0.815 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.269 0.731 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.604 13.722 11.168 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.302 4.302 4 C -0.038 4.038 5 C -0.155 4.155 6 N -0.152 5.152 7 C 0.013 3.987 8 C -0.019 4.019 9 O -0.270 6.270 10 C 0.401 3.599 11 O -0.416 6.416 12 C -0.333 4.333 13 C -0.107 4.107 14 N -0.115 5.115 15 N -0.085 5.085 16 C 0.132 3.868 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.205 1.205 25 C 0.036 3.964 26 C -0.160 4.160 27 N -0.115 5.115 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.165 0.835 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.202 0.798 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.351 11.484 10.962 23.518 hybrid contribution 0.153 1.889 -0.461 1.950 sum -17.198 13.372 10.501 24.184 Atomic orbital electron populations 1.20177 0.86628 1.03344 1.02915 1.22361 0.96994 0.90803 0.99151 1.21122 0.90892 0.99789 1.18408 1.21183 0.97524 0.84500 1.00563 1.20525 0.92988 0.98251 1.03748 1.48304 1.05086 1.03959 1.57831 1.21359 0.84472 0.96196 0.96630 1.23118 0.87278 0.94736 0.96760 1.86447 1.43492 1.62905 1.34177 1.20046 0.82105 0.77367 0.80348 1.90779 1.60181 1.55031 1.35621 1.18777 1.04209 1.16799 0.93467 1.23921 0.92317 0.95105 0.99330 1.77222 1.21807 1.23268 0.89203 1.49445 1.20430 1.33819 1.04834 1.19930 0.86821 0.93552 0.86454 1.21283 1.05369 1.01380 1.30047 0.91514 1.24933 0.98254 0.95467 0.94997 1.69922 1.34001 1.17380 1.31210 0.86255 0.81443 0.80522 0.78230 1.19501 1.20513 1.20516 1.21455 0.87885 0.90656 0.96378 1.20676 1.02618 1.03719 0.88942 1.77385 0.86028 1.22616 1.25492 0.90552 0.90430 0.90893 0.83541 0.89879 0.89466 0.90801 0.87345 0.87621 0.90927 0.90469 0.79771 0.92395 0.92220 0.92082 0.90118 0.88696 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.01 0.38 -0.11 16 2 C 0.07 0.76 7.22 -82.41 -0.59 0.17 16 3 C -0.27 -2.54 10.65 -40.02 -0.43 -2.97 16 4 C 0.09 0.83 6.93 -82.26 -0.57 0.26 16 5 C -0.10 -0.58 10.12 36.01 0.36 -0.22 16 6 N -0.37 -3.98 3.61 -57.14 -0.21 -4.19 16 7 C 0.14 1.25 6.63 -4.04 -0.03 1.22 16 8 C 0.06 0.66 5.80 37.16 0.22 0.88 16 9 O -0.35 -4.86 10.07 -40.64 -0.41 -5.27 16 10 C 0.55 9.33 7.95 34.41 0.27 9.60 16 11 O -0.53 -9.68 14.63 -19.28 -0.28 -9.96 16 12 C -0.32 -5.84 6.13 -105.08 -0.64 -6.49 16 13 C 0.08 1.43 11.87 -16.97 -0.20 1.23 16 14 N -0.30 -6.28 12.50 30.87 0.39 -5.90 16 15 N -0.31 -6.83 3.56 -57.77 -0.21 -7.04 16 16 C 0.25 6.04 5.78 -5.20 -0.03 6.01 16 17 C -0.54 -14.26 9.39 -34.44 -0.32 -14.59 16 18 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 21 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.17 3.46 7.01 -81.59 -0.57 2.89 16 26 C -0.10 -1.75 9.34 36.01 0.34 -1.41 16 27 N -0.29 -3.66 12.58 33.67 0.42 -3.23 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.39 7.08 -51.93 -0.37 0.02 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 0.73 7.04 -51.93 -0.37 0.37 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.19 2.49 8.06 -52.49 -0.42 2.06 16 40 H 0.06 1.38 7.62 -51.93 -0.40 0.99 16 41 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.09 1.59 6.51 -51.93 -0.34 1.25 16 45 H 0.09 1.56 7.70 -51.93 -0.40 1.16 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -31.75 391.39 -7.08 -38.83 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.48 Total: 0.68 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.92 Total: -1.86 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 1.13 Total: -43.70 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.69 Total: -15.23 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.75 -7.08 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892583413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.052 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds