Wall clock time and date at job start Tue Mar 31 2020 17:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35246 * 126.07120 * 2 1 4 4 C 1.40406 * 107.86201 * 180.15652 * 3 2 1 5 5 N 1.40198 * 125.96684 * 179.83172 * 4 3 2 6 6 C 1.34777 * 120.00325 * 359.71349 * 5 4 3 7 7 O 1.21593 * 119.99923 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00128 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27942 * 8 6 5 10 10 H 1.08998 * 110.66712 * 34.01809 * 9 8 6 11 11 C 1.55003 * 110.74706 * 270.80321 * 9 8 6 12 12 C 1.56249 * 102.58645 * 241.71509 * 11 9 8 13 13 H 1.09007 * 115.93245 * 158.37214 * 12 11 9 14 14 O 1.46533 * 101.32432 * 32.29728 * 12 11 9 15 15 C 1.46536 * 99.68231 * 305.89646 * 14 12 11 16 16 H 1.08991 * 115.68368 * 179.65477 * 15 14 12 17 17 C 1.55827 * 101.91903 * 305.65006 * 15 14 12 18 18 H 1.08996 * 118.19307 * 171.91963 * 17 15 14 19 19 C 1.58130 * 116.48136 * 332.02388 * 17 15 14 20 20 C 1.52998 * 60.49372 * 87.89195 * 19 17 15 21 21 H 1.08990 * 120.22715 * 113.46330 * 20 19 17 22 22 N 1.31199 * 108.05628 * 359.56570 * 4 3 2 23 23 N 1.34968 * 126.06906 * 179.67985 * 2 1 3 24 24 C 1.46498 * 125.97448 * 359.97438 * 23 2 1 25 25 C 1.50706 * 109.46661 * 269.99767 * 24 23 2 26 26 H 1.07999 * 120.00070 * 359.97438 * 25 24 23 27 27 C 1.37883 * 119.99592 * 180.02562 * 25 24 23 28 28 N 1.31514 * 119.99405 * 179.97438 * 27 25 24 29 29 Si 1.86795 * 120.00131 * 359.97438 * 27 25 24 30 30 H 1.48507 * 109.47162 * 90.00455 * 29 27 25 31 31 H 1.48502 * 109.47063 * 209.99903 * 29 27 25 32 32 H 1.48498 * 109.47272 * 330.00075 * 29 27 25 33 33 H 1.09002 * 109.47194 * 270.32266 * 1 2 3 34 34 H 1.09003 * 109.46867 * 30.31659 * 1 2 3 35 35 H 1.08995 * 109.47130 * 150.31722 * 1 2 3 36 36 H 1.07995 * 126.06713 * 359.97438 * 3 2 1 37 37 H 0.97000 * 120.00126 * 179.71984 * 5 4 3 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 39 39 H 1.08996 * 110.74617 * 0.02562 * 11 9 8 40 40 H 1.09005 * 110.74654 * 123.35085 * 11 9 8 41 41 H 1.09008 * 118.45356 * 340.73367 * 19 17 15 42 42 H 1.09000 * 116.59882 * 195.84419 * 19 17 15 43 43 H 1.08995 * 109.47476 * 29.99553 * 24 23 2 44 44 H 1.08998 * 109.47168 * 150.00266 * 24 23 2 45 45 H 0.97006 * 119.99518 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6371 0.6544 -0.0037 5 7 4.7738 1.4750 -0.0082 6 6 4.6371 2.8158 -0.0152 7 8 3.5279 3.3138 -0.0171 8 7 5.7299 3.6046 -0.0200 9 6 5.5813 5.0620 -0.0215 10 1 4.7033 5.3597 0.5518 11 6 5.5003 5.6043 -1.4713 12 6 6.7541 6.5326 -1.5581 13 1 7.1231 6.7426 -2.5621 14 8 7.6895 5.8366 -0.6705 15 6 6.8640 5.7483 0.5370 16 1 7.3261 5.2514 1.3899 17 6 6.4678 7.2379 0.7657 18 1 5.7304 7.4621 1.5364 19 6 7.4817 8.3272 0.2310 20 6 6.3973 7.7847 -0.7020 21 1 5.5983 8.4378 -1.0527 22 7 3.6336 -0.6575 0.0037 23 7 2.3017 -1.0909 0.0061 24 6 1.8500 -2.4845 0.0144 25 6 1.6958 -2.9540 1.4382 26 1 1.9129 -2.2817 2.2550 27 6 1.2784 -4.2423 1.6978 28 7 1.1443 -4.6521 2.9403 29 14 0.9036 -5.4053 0.2850 30 1 2.1364 -6.1448 -0.0878 31 1 -0.1450 -6.3702 0.7030 32 1 0.4216 -4.6257 -0.8834 33 1 -0.3634 0.0058 1.0277 34 1 -0.3633 0.8872 -0.5188 35 1 -0.3633 -0.8928 -0.5089 36 1 1.9721 2.1211 -0.0004 37 1 5.6588 1.0778 -0.0064 38 1 6.6148 3.2073 -0.0181 39 1 5.5701 4.7901 -2.1925 40 1 4.5834 6.1749 -1.6194 41 1 8.5106 8.0264 0.0331 42 1 7.3550 9.3406 0.6120 43 1 0.8912 -2.5589 -0.4985 44 1 2.5845 -3.1076 -0.4960 45 1 0.8504 -5.5583 3.1230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930632483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:04 Heat of formation + Delta-G solvation = 70.644899 kcal Electronic energy + Delta-G solvation = -27866.531823 eV Core-core repulsion = 23888.171622 eV Total energy + Delta-G solvation = -3978.360201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76534 -40.75378 -39.49297 -35.35239 -34.71541 -34.07931 -33.28389 -31.67289 -31.14243 -30.73865 -29.28431 -27.03934 -26.38217 -24.26418 -23.16025 -22.22759 -21.11033 -20.99911 -20.41342 -19.88989 -19.55721 -17.91382 -17.42196 -17.11020 -16.57168 -16.19084 -15.79050 -15.40147 -15.03201 -14.67304 -14.52483 -14.32886 -13.88582 -13.80980 -13.17966 -13.03537 -12.85889 -12.61095 -12.57938 -12.38850 -12.26360 -11.94795 -11.88141 -11.69187 -11.57180 -11.50260 -11.22576 -10.79553 -10.60398 -10.56901 -10.48481 -10.08254 -10.06806 -9.95373 -9.72566 -9.57566 -9.26399 -8.77625 -7.97032 -7.43175 -6.25612 -4.28447 2.26527 2.57881 3.00758 3.05172 3.15919 3.21736 3.23044 3.27617 3.53659 3.77867 3.98306 4.11133 4.12837 4.21921 4.32164 4.41789 4.50989 4.57312 4.75951 4.98769 5.02950 5.15402 5.24300 5.31675 5.34444 5.38994 5.42804 5.61075 5.65144 5.68657 5.80193 5.84185 6.02608 6.05687 6.16785 6.28668 6.37608 6.48663 6.49042 6.61590 6.78667 7.04618 7.29844 7.46667 7.87334 7.90214 8.32448 8.55641 8.61186 8.80137 9.29654 10.86918 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033496 B = 0.002076 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.714658 B =13485.654943 C =13665.455484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.094 3.906 3 C -0.286 4.286 4 C 0.287 3.713 5 N -0.643 5.643 6 C 0.714 3.286 7 O -0.566 6.566 8 N -0.734 5.734 9 C 0.145 3.855 10 H 0.106 0.894 11 C -0.153 4.153 12 C 0.089 3.911 13 H 0.133 0.867 14 O -0.369 6.369 15 C 0.085 3.915 16 H 0.136 0.864 17 C -0.201 4.201 18 H 0.131 0.869 19 C -0.128 4.128 20 C -0.193 4.193 21 H 0.122 0.878 22 N -0.321 5.321 23 N -0.318 5.318 24 C 0.232 3.768 25 C -0.540 4.540 26 H 0.081 0.919 27 C 0.078 3.922 28 N -0.887 5.887 29 Si 0.874 3.126 30 H -0.271 1.271 31 H -0.280 1.280 32 H -0.264 1.264 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.162 0.838 37 H 0.407 0.593 38 H 0.400 0.600 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.319 24.274 -8.415 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.317 4.317 4 C 0.033 3.967 5 N -0.293 5.293 6 C 0.414 3.586 7 O -0.441 6.441 8 N -0.390 5.390 9 C 0.039 3.961 10 H 0.124 0.876 11 C -0.192 4.192 12 C 0.032 3.968 13 H 0.151 0.849 14 O -0.287 6.287 15 C 0.027 3.973 16 H 0.154 0.846 17 C -0.220 4.220 18 H 0.149 0.851 19 C -0.165 4.165 20 C -0.211 4.211 21 H 0.140 0.860 22 N -0.152 5.152 23 N -0.100 5.100 24 C 0.113 3.887 25 C -0.578 4.578 26 H 0.099 0.901 27 C -0.126 4.126 28 N -0.524 5.524 29 Si 0.700 3.300 30 H -0.197 1.197 31 H -0.206 1.206 32 H -0.189 1.189 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.179 0.821 37 H 0.242 0.758 38 H 0.234 0.766 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.142 23.295 -8.341 26.741 hybrid contribution 0.028 -0.447 -0.440 0.628 sum 10.170 22.848 -8.781 26.506 Atomic orbital electron populations 1.20349 0.87833 1.02671 1.03436 1.21055 0.94887 0.86986 1.00735 1.21242 0.89644 0.99835 1.20958 1.18644 0.86617 0.89187 1.02271 1.41390 1.07625 1.03721 1.76569 1.15616 0.84739 0.80381 0.77883 1.90870 1.23483 1.73446 1.56269 1.44954 1.07784 1.05721 1.80551 1.22363 0.98964 0.78394 0.96399 0.87568 1.23703 0.98361 0.99698 0.97452 1.24370 0.88434 0.89233 0.94784 0.84937 1.90117 1.36756 1.78299 1.23578 1.24438 0.89548 0.93838 0.89523 0.84613 1.25324 1.05466 0.92476 0.98709 0.85088 1.23584 0.95952 0.96836 1.00131 1.24674 1.03361 1.00414 0.92634 0.86011 1.77249 0.99419 1.08471 1.30017 1.48481 1.01165 1.06973 1.53407 1.19989 0.95267 0.73783 0.99679 1.21183 1.47245 0.99008 0.90356 0.90121 1.24817 0.94517 0.97490 0.95781 1.69878 1.45770 1.18307 1.18415 0.86884 0.78963 0.81487 0.82622 1.19655 1.20561 1.18891 0.90095 0.90683 0.91146 0.82052 0.75821 0.76605 0.89782 0.89480 0.88031 0.87992 0.93233 0.93702 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.01 0.36 -1.06 16 2 C 0.09 1.96 6.93 -82.28 -0.57 1.39 16 3 C -0.29 -5.86 9.52 -39.83 -0.38 -6.24 16 4 C 0.29 5.81 8.11 -154.37 -1.25 4.56 16 5 N -0.64 -9.96 5.46 -15.51 -0.08 -10.05 16 6 C 0.71 10.37 8.53 -86.92 -0.74 9.63 16 7 O -0.57 -10.03 13.15 5.28 0.07 -9.96 16 8 N -0.73 -7.43 5.11 -56.18 -0.29 -7.71 16 9 C 0.14 1.31 2.82 -65.37 -0.18 1.12 16 10 H 0.11 1.10 7.50 -51.93 -0.39 0.71 16 11 C -0.15 -1.27 6.34 -23.93 -0.15 -1.42 16 12 C 0.09 0.64 5.66 -23.48 -0.13 0.50 16 13 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 14 O -0.37 -3.24 10.82 -35.23 -0.38 -3.62 16 15 C 0.08 0.64 5.20 -23.72 -0.12 0.51 16 16 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.20 -1.33 6.97 -84.24 -0.59 -1.91 16 18 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.13 -0.77 9.96 -23.91 -0.24 -1.00 16 20 C -0.19 -1.21 6.51 -87.07 -0.57 -1.77 16 21 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 22 N -0.32 -7.34 12.59 31.44 0.40 -6.95 16 23 N -0.32 -7.43 3.59 -58.32 -0.21 -7.64 16 24 C 0.23 5.61 5.06 -5.19 -0.03 5.58 16 25 C -0.54 -15.17 9.94 -34.43 -0.34 -15.52 16 26 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 27 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 28 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 29 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 30 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 31 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 32 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.14 7.07 -51.93 -0.37 0.78 16 36 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 37 H 0.41 5.06 8.84 -40.82 -0.36 4.70 16 38 H 0.40 3.15 8.66 -40.82 -0.35 2.79 16 39 H 0.08 0.79 7.99 -51.93 -0.41 0.37 16 40 H 0.09 0.70 8.04 -51.93 -0.42 0.28 16 41 H 0.10 0.68 7.72 -51.92 -0.40 0.28 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 1.12 6.10 -51.93 -0.32 0.80 16 44 H 0.05 1.08 7.57 -51.93 -0.39 0.68 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -34.54 368.77 -10.14 -44.68 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.27 Total: 9.29 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -5.03 Total: -3.53 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.59 Total: -57.96 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.31 Total: -13.57 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.54 -10.14 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.321 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds