Wall clock time and date at job start Tue Mar 31 2020 17:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35246 * 126.07120 * 2 1 4 4 C 1.40406 * 107.86201 * 180.15652 * 3 2 1 5 5 N 1.40198 * 125.96684 * 179.83172 * 4 3 2 6 6 C 1.34777 * 120.00325 * 359.71349 * 5 4 3 7 7 O 1.21593 * 119.99923 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00128 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27942 * 8 6 5 10 10 H 1.08998 * 110.66712 * 34.01809 * 9 8 6 11 11 C 1.55003 * 110.74706 * 270.80321 * 9 8 6 12 12 C 1.56249 * 102.58645 * 241.71509 * 11 9 8 13 13 H 1.09007 * 115.93245 * 158.37214 * 12 11 9 14 14 O 1.46533 * 101.32432 * 32.29728 * 12 11 9 15 15 C 1.46536 * 99.68231 * 305.89646 * 14 12 11 16 16 H 1.08991 * 115.68368 * 179.65477 * 15 14 12 17 17 C 1.55827 * 101.91903 * 305.65006 * 15 14 12 18 18 H 1.08996 * 118.19307 * 171.91963 * 17 15 14 19 19 C 1.58130 * 116.48136 * 332.02388 * 17 15 14 20 20 C 1.52998 * 60.49372 * 87.89195 * 19 17 15 21 21 H 1.08990 * 120.22715 * 113.46330 * 20 19 17 22 22 N 1.31199 * 108.05628 * 359.56570 * 4 3 2 23 23 N 1.34968 * 126.06906 * 179.67985 * 2 1 3 24 24 C 1.46498 * 125.97448 * 359.97438 * 23 2 1 25 25 C 1.50706 * 109.46661 * 269.99767 * 24 23 2 26 26 H 1.07999 * 120.00070 * 359.97438 * 25 24 23 27 27 C 1.37883 * 119.99592 * 180.02562 * 25 24 23 28 28 N 1.31514 * 119.99405 * 179.97438 * 27 25 24 29 29 Si 1.86795 * 120.00131 * 359.97438 * 27 25 24 30 30 H 1.48507 * 109.47162 * 90.00455 * 29 27 25 31 31 H 1.48502 * 109.47063 * 209.99903 * 29 27 25 32 32 H 1.48498 * 109.47272 * 330.00075 * 29 27 25 33 33 H 1.09002 * 109.47194 * 270.32266 * 1 2 3 34 34 H 1.09003 * 109.46867 * 30.31659 * 1 2 3 35 35 H 1.08995 * 109.47130 * 150.31722 * 1 2 3 36 36 H 1.07995 * 126.06713 * 359.97438 * 3 2 1 37 37 H 0.97000 * 120.00126 * 179.71984 * 5 4 3 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 39 39 H 1.08996 * 110.74617 * 0.02562 * 11 9 8 40 40 H 1.09005 * 110.74654 * 123.35085 * 11 9 8 41 41 H 1.09008 * 118.45356 * 340.73367 * 19 17 15 42 42 H 1.09000 * 116.59882 * 195.84419 * 19 17 15 43 43 H 1.08995 * 109.47476 * 29.99553 * 24 23 2 44 44 H 1.08998 * 109.47168 * 150.00266 * 24 23 2 45 45 H 0.97006 * 119.99518 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6371 0.6544 -0.0037 5 7 4.7738 1.4750 -0.0082 6 6 4.6371 2.8158 -0.0152 7 8 3.5279 3.3138 -0.0171 8 7 5.7299 3.6046 -0.0200 9 6 5.5813 5.0620 -0.0215 10 1 4.7033 5.3597 0.5518 11 6 5.5003 5.6043 -1.4713 12 6 6.7541 6.5326 -1.5581 13 1 7.1231 6.7426 -2.5621 14 8 7.6895 5.8366 -0.6705 15 6 6.8640 5.7483 0.5370 16 1 7.3261 5.2514 1.3899 17 6 6.4678 7.2379 0.7657 18 1 5.7304 7.4621 1.5364 19 6 7.4817 8.3272 0.2310 20 6 6.3973 7.7847 -0.7020 21 1 5.5983 8.4378 -1.0527 22 7 3.6336 -0.6575 0.0037 23 7 2.3017 -1.0909 0.0061 24 6 1.8500 -2.4845 0.0144 25 6 1.6958 -2.9540 1.4382 26 1 1.9129 -2.2817 2.2550 27 6 1.2784 -4.2423 1.6978 28 7 1.1443 -4.6521 2.9403 29 14 0.9036 -5.4053 0.2850 30 1 2.1364 -6.1448 -0.0878 31 1 -0.1450 -6.3702 0.7030 32 1 0.4216 -4.6257 -0.8834 33 1 -0.3634 0.0058 1.0277 34 1 -0.3633 0.8872 -0.5188 35 1 -0.3633 -0.8928 -0.5089 36 1 1.9721 2.1211 -0.0004 37 1 5.6588 1.0778 -0.0064 38 1 6.6148 3.2073 -0.0181 39 1 5.5701 4.7901 -2.1925 40 1 4.5834 6.1749 -1.6194 41 1 8.5106 8.0264 0.0331 42 1 7.3550 9.3406 0.6120 43 1 0.8912 -2.5589 -0.4985 44 1 2.5845 -3.1076 -0.4960 45 1 0.8504 -5.5583 3.1230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930632483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:03 Heat of formation + Delta-G solvation = 46.551985 kcal Electronic energy + Delta-G solvation = -27867.576570 eV Core-core repulsion = 23888.171622 eV Total energy + Delta-G solvation = -3979.404948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51178 -42.19018 -40.74010 -36.53162 -35.88273 -35.23578 -34.71722 -33.24785 -32.79045 -31.60921 -30.03160 -28.84223 -27.88260 -25.08909 -24.51562 -23.56562 -22.08856 -21.72368 -21.25471 -20.98403 -20.93061 -19.23097 -19.14731 -18.06394 -17.77153 -17.26913 -16.89356 -16.76039 -16.30540 -16.21230 -15.61954 -15.45255 -15.26640 -14.88055 -14.56228 -14.39873 -13.86631 -13.83398 -13.72268 -13.58579 -13.39460 -13.29592 -13.14342 -12.86774 -12.57171 -12.48088 -12.35144 -12.25058 -12.10071 -11.82443 -11.60580 -11.43861 -11.25309 -11.15238 -11.00324 -10.89376 -10.62024 -10.18817 -9.58594 -9.05516 -8.39909 -6.50856 0.96507 1.06265 1.35970 1.37948 1.47610 1.63094 2.00085 2.27057 2.34865 2.52860 2.70998 2.92552 3.09512 3.40800 3.57954 3.63833 3.82784 3.85340 3.87611 4.02682 4.11108 4.19172 4.31872 4.40527 4.52382 4.60930 4.63717 4.75890 4.76691 4.80572 4.82531 4.88819 4.93968 4.98637 5.00324 5.04245 5.13192 5.18831 5.24103 5.31868 5.40396 5.55354 5.81187 5.88951 6.01550 6.37902 6.52530 6.68734 7.08168 7.12905 7.38448 8.76729 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033496 B = 0.002076 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.714658 B =13485.654943 C =13665.455484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.090 3.910 3 C -0.297 4.297 4 C 0.294 3.706 5 N -0.636 5.636 6 C 0.714 3.286 7 O -0.597 6.597 8 N -0.713 5.713 9 C 0.140 3.860 10 H 0.094 0.906 11 C -0.151 4.151 12 C 0.090 3.910 13 H 0.148 0.852 14 O -0.384 6.384 15 C 0.089 3.911 16 H 0.146 0.854 17 C -0.210 4.210 18 H 0.138 0.862 19 C -0.121 4.121 20 C -0.192 4.192 21 H 0.134 0.866 22 N -0.358 5.358 23 N -0.343 5.343 24 C 0.241 3.759 25 C -0.549 4.549 26 H 0.023 0.977 27 C 0.020 3.980 28 N -0.937 5.937 29 Si 0.952 3.048 30 H -0.266 1.266 31 H -0.274 1.274 32 H -0.233 1.233 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.167 0.833 37 H 0.421 0.579 38 H 0.413 0.587 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.472 25.375 -10.421 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.328 4.328 4 C 0.039 3.961 5 N -0.288 5.288 6 C 0.414 3.586 7 O -0.475 6.475 8 N -0.369 5.369 9 C 0.034 3.966 10 H 0.112 0.888 11 C -0.190 4.190 12 C 0.033 3.967 13 H 0.166 0.834 14 O -0.303 6.303 15 C 0.031 3.969 16 H 0.164 0.836 17 C -0.228 4.228 18 H 0.156 0.844 19 C -0.158 4.158 20 C -0.210 4.210 21 H 0.152 0.848 22 N -0.188 5.188 23 N -0.126 5.126 24 C 0.121 3.879 25 C -0.588 4.588 26 H 0.041 0.959 27 C -0.180 4.180 28 N -0.576 5.576 29 Si 0.773 3.227 30 H -0.191 1.191 31 H -0.199 1.199 32 H -0.156 1.156 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.184 0.816 37 H 0.258 0.742 38 H 0.250 0.750 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.356 24.452 -10.355 28.502 hybrid contribution 0.067 -0.615 0.278 0.678 sum 10.423 23.837 -10.076 27.900 Atomic orbital electron populations 1.20504 0.85156 1.04706 1.03809 1.21755 0.96709 0.86359 0.99203 1.21421 0.89935 0.99982 1.21420 1.18942 0.88076 0.88915 1.00201 1.41395 1.07132 1.03839 1.76439 1.15756 0.85258 0.80054 0.77579 1.90838 1.25063 1.73838 1.57717 1.44844 1.07237 1.05980 1.78854 1.22514 0.99560 0.77353 0.97128 0.88807 1.23649 0.99303 0.99669 0.96378 1.24505 0.87449 0.89197 0.95543 0.83426 1.90108 1.37357 1.78623 1.24178 1.24477 0.88478 0.94496 0.89467 0.83628 1.25381 1.06234 0.91915 0.99305 0.84392 1.23645 0.95362 0.97317 0.99492 1.24738 1.03894 1.00248 0.92142 0.84821 1.77160 0.99797 1.09778 1.32101 1.48413 1.01768 1.07061 1.55323 1.19785 0.96437 0.74650 0.96999 1.21252 1.47649 0.98697 0.91157 0.95868 1.25851 0.93777 0.99310 0.99023 1.70040 1.46987 1.19194 1.21360 0.85664 0.79017 0.78748 0.79276 1.19093 1.19941 1.15631 0.90408 0.87382 0.90364 0.81581 0.74172 0.75034 0.90923 0.89239 0.88720 0.86370 0.90758 0.93390 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.70 10.11 71.24 0.72 -1.98 16 2 C 0.09 3.72 6.93 41.39 0.29 4.01 16 3 C -0.30 -12.17 9.52 22.11 0.21 -11.96 16 4 C 0.29 11.99 8.11 133.32 1.08 13.07 16 5 N -0.64 -19.53 5.46 -321.23 -1.75 -21.28 16 6 C 0.71 20.40 8.53 179.05 1.53 21.93 16 7 O -0.60 -21.06 13.15 -4.01 -0.05 -21.11 16 8 N -0.71 -13.78 5.11 -449.91 -2.30 -16.08 16 9 C 0.14 2.40 2.82 46.65 0.13 2.53 16 10 H 0.09 1.89 7.50 -2.39 -0.02 1.88 16 11 C -0.15 -2.35 6.34 32.41 0.21 -2.14 16 12 C 0.09 1.13 5.66 32.70 0.19 1.32 16 13 H 0.15 1.37 8.14 -2.38 -0.02 1.35 16 14 O -0.38 -6.12 10.82 -148.98 -1.61 -7.73 16 15 C 0.09 1.21 5.20 32.55 0.17 1.38 16 16 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 17 C -0.21 -2.40 6.97 -6.66 -0.05 -2.45 16 18 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 19 C -0.12 -1.19 9.96 32.42 0.32 -0.87 16 20 C -0.19 -2.02 6.51 -8.49 -0.06 -2.07 16 21 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 22 N -0.36 -16.59 12.59 -54.44 -0.69 -17.27 16 23 N -0.34 -16.12 3.59 -338.44 -1.22 -17.34 16 24 C 0.24 11.56 5.06 85.64 0.43 11.99 16 25 C -0.55 -31.73 9.94 25.60 0.25 -31.48 16 26 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 27 C 0.02 1.13 5.47 84.66 0.46 1.59 16 28 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 29 Si 0.95 40.96 27.47 68.60 1.88 42.84 16 30 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 31 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 32 H -0.23 -8.84 6.54 99.48 0.65 -8.18 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.08 2.38 7.07 -2.39 -0.02 2.37 16 36 H 0.17 6.65 5.91 -2.91 -0.02 6.63 16 37 H 0.42 10.24 8.84 -92.71 -0.82 9.42 16 38 H 0.41 5.95 8.66 -92.71 -0.80 5.15 16 39 H 0.07 1.31 7.99 -2.39 -0.02 1.29 16 40 H 0.09 1.35 8.04 -2.38 -0.02 1.33 16 41 H 0.09 1.09 7.72 -2.38 -0.02 1.07 16 42 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 3.17 6.10 -2.39 -0.01 3.16 16 44 H 0.05 2.26 7.57 -2.39 -0.02 2.24 16 45 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -77.32 368.77 -0.17 -77.49 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -0.63 Total: 32.62 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.89 Total: 4.85 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -5.65 Total: -128.96 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.66 Total: -28.85 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.84 kcal Total: -77.32 -0.17 -77.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.044 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds