Wall clock time and date at job start Tue Mar 31 2020 17:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42902 * 109.45904 * 289.41244 * 3 2 1 5 5 C 1.53044 * 109.45955 * 49.38693 * 3 2 1 6 6 C 1.53185 * 109.31238 * 58.63939 * 5 3 2 7 7 N 1.46931 * 108.77650 * 54.63660 * 6 5 3 8 8 C 1.34777 * 120.63462 * 126.36717 * 7 6 5 9 9 O 1.21587 * 120.00315 * 174.96394 * 8 7 6 10 10 N 1.34778 * 119.99852 * 354.96490 * 8 7 6 11 11 C 1.40188 * 119.99972 * 185.21362 * 10 8 7 12 12 C 1.40400 * 125.97534 * 359.97438 * 11 10 8 13 13 C 1.35244 * 107.86908 * 180.02562 * 12 11 10 14 14 C 1.50702 * 126.07060 * 179.97438 * 13 12 11 15 15 N 1.34956 * 107.85892 * 0.02562 * 13 12 11 16 16 C 1.46503 * 125.97442 * 180.02562 * 15 13 12 17 17 C 1.50691 * 109.47303 * 89.99672 * 16 15 13 18 18 H 1.07997 * 120.00226 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99856 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00194 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00152 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46882 * 59.99791 * 21 19 17 23 23 H 1.48497 * 109.47409 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46983 * 300.00205 * 21 19 17 25 25 N 1.31217 * 125.97322 * 179.69010 * 11 10 8 26 26 C 1.46925 * 118.73635 * 306.63860 * 7 6 5 27 27 C 1.52767 * 109.00590 * 53.31009 * 26 7 6 28 28 H 4.38424 * 5.44533 * 180.02562 * 4 1 2 29 29 H 0.96693 * 114.00224 * 299.97692 * 4 3 2 30 30 H 1.09001 * 109.49599 * 298.68943 * 5 3 2 31 31 H 1.08994 * 109.51785 * 178.60934 * 5 3 2 32 32 H 1.08999 * 109.59107 * 294.84856 * 6 5 3 33 33 H 1.09004 * 109.70755 * 174.48997 * 6 5 3 34 34 H 0.97007 * 119.99711 * 5.20705 * 10 8 7 35 35 H 1.08000 * 126.06261 * 0.02562 * 12 11 10 36 36 H 1.09002 * 109.46793 * 90.02447 * 14 13 12 37 37 H 1.08998 * 109.47401 * 210.02911 * 14 13 12 38 38 H 1.09001 * 109.47195 * 330.03860 * 14 13 12 39 39 H 1.09005 * 109.46544 * 209.99517 * 16 15 13 40 40 H 1.09001 * 109.47198 * 329.98952 * 16 15 13 41 41 H 0.97002 * 120.00584 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.59086 * 173.14183 * 26 7 6 43 43 H 1.09002 * 109.59238 * 293.57172 * 26 7 6 44 44 H 1.09006 * 109.56408 * 185.54811 * 27 26 7 45 45 H 1.09004 * 109.36075 * 65.49983 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1223 -0.4470 1.2708 5 6 3.1563 -0.9384 -1.0954 6 6 2.6155 -0.4757 -2.4519 7 7 2.9776 0.9346 -2.6492 8 6 3.6311 1.3268 -3.7608 9 8 3.8442 2.5078 -3.9559 10 7 4.0482 0.4099 -4.6561 11 6 4.8221 0.8056 -5.7560 12 6 5.2330 2.1164 -6.0465 13 6 5.9586 2.0806 -7.1872 14 6 6.5981 3.2625 -7.8695 15 7 6.0074 0.7989 -7.6067 16 6 6.6934 0.3113 -8.8059 17 6 8.1118 -0.0594 -8.4575 18 1 8.4670 0.0569 -7.4442 19 6 8.9561 -0.5471 -9.4323 20 7 8.5235 -0.6892 -10.6660 21 14 10.7147 -1.0061 -9.0006 22 1 10.7085 -2.0710 -7.9657 23 1 11.4100 -1.5003 -10.2161 24 1 11.4238 0.1891 -8.4768 25 7 5.2935 0.0151 -6.6912 26 6 2.6191 1.9082 -1.6088 27 6 3.1549 1.4195 -0.2643 28 1 -1.0499 -0.0002 0.0001 29 1 2.8370 0.1024 2.0135 30 1 2.8129 -1.9531 -0.8938 31 1 4.2460 -0.9198 -1.1126 32 1 1.5307 -0.5800 -2.4677 33 1 3.0523 -1.0797 -3.2472 34 1 3.8130 -0.5240 -4.5394 35 1 5.0094 2.9969 -5.4625 36 1 7.6086 3.4008 -7.4850 37 1 6.6393 3.0833 -8.9438 38 1 6.0089 4.1582 -7.6727 39 1 6.1727 -0.5655 -9.1910 40 1 6.6982 1.0935 -9.5651 41 1 9.1176 -1.0320 -11.3520 42 1 3.0603 2.8761 -1.8465 43 1 1.5345 2.0022 -1.5544 44 1 2.8106 2.0832 0.5289 45 1 4.2447 1.4165 -0.2891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930632672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:58 Heat of formation + Delta-G solvation = 70.032926 kcal Electronic energy + Delta-G solvation = -28103.286925 eV Core-core repulsion = 24124.900187 eV Total energy + Delta-G solvation = -3978.386738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06177 -40.25288 -38.90611 -36.16431 -34.93885 -33.51521 -33.21166 -31.86089 -31.43268 -31.10814 -30.57022 -26.72620 -26.31691 -25.45282 -23.97893 -23.07488 -22.33907 -20.91535 -19.80314 -19.49623 -18.58785 -17.89456 -16.87667 -16.66708 -16.38682 -15.78691 -15.65521 -15.39318 -15.21983 -14.77185 -14.48363 -14.31083 -14.14747 -13.87062 -13.40722 -13.01582 -12.85143 -12.46514 -12.40838 -12.25003 -12.16687 -11.94395 -11.80329 -11.60216 -11.51250 -11.36403 -11.10445 -11.05501 -10.95851 -10.79846 -10.45713 -10.35671 -10.22444 -9.99323 -9.63497 -9.53195 -8.94733 -8.62396 -7.89489 -7.38584 -6.23686 -4.31275 2.26998 2.27209 2.33586 2.64302 3.07384 3.24442 3.28154 3.30917 3.37421 3.68571 3.75119 3.85940 4.02668 4.28593 4.32306 4.33470 4.59407 4.83743 5.00939 5.02754 5.09215 5.10256 5.33572 5.36784 5.39358 5.47378 5.55870 5.63448 5.73228 5.80136 5.94403 6.09998 6.14457 6.29868 6.48011 6.61544 6.63741 6.92927 7.04168 7.08787 7.10400 7.11434 7.52937 7.68806 7.86786 7.91323 8.09096 8.54650 8.69016 8.77484 9.34843 10.83444 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.002423 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.569429 B =11554.300539 C =12176.802027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.215 4.215 3 C 0.247 3.753 4 O -0.547 6.547 5 C -0.119 4.119 6 C 0.113 3.887 7 N -0.628 5.628 8 C 0.719 3.281 9 O -0.563 6.563 10 N -0.644 5.644 11 C 0.281 3.719 12 C -0.289 4.289 13 C 0.091 3.909 14 C -0.083 4.083 15 N -0.318 5.318 16 C 0.259 3.741 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.066 3.934 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.274 1.274 25 N -0.324 5.324 26 C 0.135 3.865 27 C -0.156 4.156 28 H 0.219 0.781 29 H 0.381 0.619 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.405 0.595 35 H 0.160 0.840 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.268 0.732 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.849 3.521 20.618 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.216 4.216 3 C 0.207 3.793 4 O -0.353 6.353 5 C -0.157 4.157 6 C -0.011 4.011 7 N -0.366 5.366 8 C 0.420 3.580 9 O -0.438 6.438 10 N -0.296 5.296 11 C 0.028 3.972 12 C -0.320 4.320 13 C -0.040 4.040 14 C -0.142 4.142 15 N -0.101 5.101 16 C 0.142 3.858 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.154 5.154 26 C 0.012 3.988 27 C -0.195 4.195 28 H 0.235 0.765 29 H 0.229 0.771 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.242 0.758 35 H 0.177 0.823 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.219 2.619 19.376 24.176 hybrid contribution 0.242 0.153 0.937 0.980 sum -13.977 2.772 20.313 24.812 Atomic orbital electron populations 1.25069 0.95945 0.99983 0.98326 1.23777 0.94941 1.00934 1.01925 1.17997 0.81906 0.94292 0.85131 1.86631 1.75962 1.57060 1.15616 1.21874 1.02629 0.99208 0.91983 1.21659 1.00762 0.81832 0.96853 1.47204 1.61275 1.08551 1.19617 1.15488 0.78334 0.84702 0.79523 1.90863 1.61199 1.15298 1.76412 1.41592 1.54003 1.10688 1.23295 1.18673 0.96331 0.92780 0.89445 1.21205 1.11813 0.97479 1.01479 1.21049 0.99225 0.87826 0.95928 1.20328 1.00347 0.93087 1.00409 1.48963 1.37862 1.03250 1.19980 1.19668 0.91592 0.96699 0.77877 1.21286 0.95095 1.44699 0.96320 0.91822 1.24924 0.99274 0.94930 0.94647 1.69907 1.36736 1.45068 1.01319 0.86418 0.83319 0.79096 0.77863 1.19997 1.20973 1.19941 1.77248 1.17243 1.17965 1.02958 1.21307 0.99868 0.93146 0.84503 1.22583 1.03001 0.95390 0.98520 0.76450 0.77080 0.89310 0.89293 0.90609 0.89399 0.75794 0.82307 0.90463 0.90892 0.90837 0.93056 0.92806 0.92219 0.87943 0.91389 0.89830 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 19.25 29.55 0.57 -0.57 16 2 C -0.22 -1.65 9.68 -37.12 -0.36 -2.01 16 3 C 0.25 1.92 1.09 -93.37 -0.10 1.82 16 4 O -0.55 -4.28 12.95 -35.23 -0.46 -4.73 16 5 C -0.12 -0.96 5.25 -26.61 -0.14 -1.10 16 6 C 0.11 0.96 6.08 -3.71 -0.02 0.93 16 7 N -0.63 -6.94 2.98 -178.76 -0.53 -7.48 16 8 C 0.72 11.00 8.26 -86.92 -0.72 10.29 16 9 O -0.56 -10.32 12.93 5.29 0.07 -10.25 16 10 N -0.64 -10.40 5.36 -15.51 -0.08 -10.49 16 11 C 0.28 5.83 8.11 -154.36 -1.25 4.58 16 12 C -0.29 -6.05 9.52 -39.83 -0.38 -6.43 16 13 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 14 C -0.08 -1.45 10.11 36.01 0.36 -1.08 16 15 N -0.32 -7.63 3.59 -58.33 -0.21 -7.84 16 16 C 0.26 6.69 5.99 -5.20 -0.03 6.66 16 17 C -0.54 -14.82 9.39 -34.44 -0.32 -15.15 16 18 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 21 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 N -0.32 -7.55 12.59 31.44 0.40 -7.15 16 26 C 0.13 1.25 6.04 -3.93 -0.02 1.23 16 27 C -0.16 -1.16 5.21 -26.83 -0.14 -1.30 16 28 H 0.22 0.74 7.80 -54.10 -0.42 0.32 16 29 H 0.38 1.56 9.03 45.56 0.41 1.97 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.59 7.38 -51.93 -0.38 0.20 16 33 H 0.09 0.69 5.56 -51.93 -0.29 0.40 16 34 H 0.40 5.37 6.28 -40.82 -0.26 5.11 16 35 H 0.16 3.26 5.93 -52.49 -0.31 2.95 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.10 1.08 7.04 -51.93 -0.37 0.72 16 43 H 0.07 0.58 7.38 -51.93 -0.38 0.19 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -34.28 374.54 -7.92 -42.20 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.24 Total: 7.39 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.22 Total: 0.94 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.31 Total: -57.37 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.39 Total: -14.98 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.28 -7.92 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.230 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds