Wall clock time and date at job start Tue Mar 31 2020 17:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42902 * 109.45904 * 289.41244 * 3 2 1 5 5 C 1.53044 * 109.45955 * 49.38693 * 3 2 1 6 6 C 1.53185 * 109.31238 * 58.63939 * 5 3 2 7 7 N 1.46931 * 108.77650 * 54.63660 * 6 5 3 8 8 C 1.34777 * 120.63462 * 126.36717 * 7 6 5 9 9 O 1.21587 * 120.00315 * 174.96394 * 8 7 6 10 10 N 1.34778 * 119.99852 * 354.96490 * 8 7 6 11 11 C 1.40188 * 119.99972 * 185.21362 * 10 8 7 12 12 C 1.40400 * 125.97534 * 359.97438 * 11 10 8 13 13 C 1.35244 * 107.86908 * 180.02562 * 12 11 10 14 14 C 1.50702 * 126.07060 * 179.97438 * 13 12 11 15 15 N 1.34956 * 107.85892 * 0.02562 * 13 12 11 16 16 C 1.46503 * 125.97442 * 180.02562 * 15 13 12 17 17 C 1.50691 * 109.47303 * 89.99672 * 16 15 13 18 18 H 1.07997 * 120.00226 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99856 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00194 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00152 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46882 * 59.99791 * 21 19 17 23 23 H 1.48497 * 109.47409 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46983 * 300.00205 * 21 19 17 25 25 N 1.31217 * 125.97322 * 179.69010 * 11 10 8 26 26 C 1.46925 * 118.73635 * 306.63860 * 7 6 5 27 27 C 1.52767 * 109.00590 * 53.31009 * 26 7 6 28 28 H 4.38424 * 5.44533 * 180.02562 * 4 1 2 29 29 H 0.96693 * 114.00224 * 299.97692 * 4 3 2 30 30 H 1.09001 * 109.49599 * 298.68943 * 5 3 2 31 31 H 1.08994 * 109.51785 * 178.60934 * 5 3 2 32 32 H 1.08999 * 109.59107 * 294.84856 * 6 5 3 33 33 H 1.09004 * 109.70755 * 174.48997 * 6 5 3 34 34 H 0.97007 * 119.99711 * 5.20705 * 10 8 7 35 35 H 1.08000 * 126.06261 * 0.02562 * 12 11 10 36 36 H 1.09002 * 109.46793 * 90.02447 * 14 13 12 37 37 H 1.08998 * 109.47401 * 210.02911 * 14 13 12 38 38 H 1.09001 * 109.47195 * 330.03860 * 14 13 12 39 39 H 1.09005 * 109.46544 * 209.99517 * 16 15 13 40 40 H 1.09001 * 109.47198 * 329.98952 * 16 15 13 41 41 H 0.97002 * 120.00584 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.59086 * 173.14183 * 26 7 6 43 43 H 1.09002 * 109.59238 * 293.57172 * 26 7 6 44 44 H 1.09006 * 109.56408 * 185.54811 * 27 26 7 45 45 H 1.09004 * 109.36075 * 65.49983 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1223 -0.4470 1.2708 5 6 3.1563 -0.9384 -1.0954 6 6 2.6155 -0.4757 -2.4519 7 7 2.9776 0.9346 -2.6492 8 6 3.6311 1.3268 -3.7608 9 8 3.8442 2.5078 -3.9559 10 7 4.0482 0.4099 -4.6561 11 6 4.8221 0.8056 -5.7560 12 6 5.2330 2.1164 -6.0465 13 6 5.9586 2.0806 -7.1872 14 6 6.5981 3.2625 -7.8695 15 7 6.0074 0.7989 -7.6067 16 6 6.6934 0.3113 -8.8059 17 6 8.1118 -0.0594 -8.4575 18 1 8.4670 0.0569 -7.4442 19 6 8.9561 -0.5471 -9.4323 20 7 8.5235 -0.6892 -10.6660 21 14 10.7147 -1.0061 -9.0006 22 1 10.7085 -2.0710 -7.9657 23 1 11.4100 -1.5003 -10.2161 24 1 11.4238 0.1891 -8.4768 25 7 5.2935 0.0151 -6.6912 26 6 2.6191 1.9082 -1.6088 27 6 3.1549 1.4195 -0.2643 28 1 -1.0499 -0.0002 0.0001 29 1 2.8370 0.1024 2.0135 30 1 2.8129 -1.9531 -0.8938 31 1 4.2460 -0.9198 -1.1126 32 1 1.5307 -0.5800 -2.4677 33 1 3.0523 -1.0797 -3.2472 34 1 3.8130 -0.5240 -4.5394 35 1 5.0094 2.9969 -5.4625 36 1 7.6086 3.4008 -7.4850 37 1 6.6393 3.0833 -8.9438 38 1 6.0089 4.1582 -7.6727 39 1 6.1727 -0.5655 -9.1910 40 1 6.6982 1.0935 -9.5651 41 1 9.1176 -1.0320 -11.3520 42 1 3.0603 2.8761 -1.8465 43 1 1.5345 2.0022 -1.5544 44 1 2.8106 2.0832 0.5289 45 1 4.2447 1.4165 -0.2891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930632672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:58 Heat of formation + Delta-G solvation = 46.689855 kcal Electronic energy + Delta-G solvation = -28104.299157 eV Core-core repulsion = 24124.900187 eV Total energy + Delta-G solvation = -3979.398969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41190 -41.51371 -39.83820 -37.00416 -36.41183 -35.33894 -33.98527 -33.13763 -32.63484 -32.20775 -31.81478 -28.58755 -27.86457 -26.38826 -25.07822 -24.50267 -23.32358 -22.05906 -21.30485 -20.71166 -19.33654 -19.06944 -18.75906 -17.82714 -17.42000 -17.15934 -16.88081 -16.49924 -16.08530 -16.01048 -15.84334 -15.67510 -15.28960 -14.90704 -14.66684 -14.30411 -14.19728 -13.82893 -13.69839 -13.58750 -13.42652 -13.13876 -13.04685 -12.86936 -12.65283 -12.62050 -12.44800 -12.22802 -12.13111 -12.10139 -11.61235 -11.57530 -11.48543 -11.37173 -11.12235 -10.89602 -10.72268 -9.93045 -9.55194 -9.06912 -8.31389 -6.49158 1.01676 1.04691 1.38894 1.40416 1.49369 1.63188 1.77241 1.82760 1.96390 2.33522 2.35465 2.73085 2.98058 3.17602 3.26162 3.61078 3.69052 3.84966 3.91500 4.14419 4.19460 4.31634 4.40419 4.43649 4.47320 4.69221 4.71465 4.73289 4.76804 4.85692 4.90525 4.93126 4.98103 4.99934 5.02063 5.15515 5.20131 5.21514 5.49174 5.54758 5.70105 5.82482 5.95982 6.27936 6.55399 6.62863 6.63936 6.70516 7.07236 7.21585 7.32332 8.74148 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.002423 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.569429 B =11554.300539 C =12176.802027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.246 4.246 3 C 0.250 3.750 4 O -0.560 6.560 5 C -0.119 4.119 6 C 0.111 3.889 7 N -0.616 5.616 8 C 0.715 3.285 9 O -0.595 6.595 10 N -0.637 5.637 11 C 0.291 3.709 12 C -0.297 4.297 13 C 0.088 3.912 14 C -0.081 4.081 15 N -0.343 5.343 16 C 0.276 3.724 17 C -0.553 4.553 18 H 0.049 0.951 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.970 3.030 22 H -0.276 1.276 23 H -0.273 1.273 24 H -0.266 1.266 25 N -0.359 5.359 26 C 0.133 3.867 27 C -0.148 4.148 28 H 0.245 0.755 29 H 0.396 0.604 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.417 0.583 35 H 0.166 0.834 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.024 0.976 40 H 0.053 0.947 41 H 0.274 0.726 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.431 3.752 22.382 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.246 4.246 3 C 0.209 3.791 4 O -0.369 6.369 5 C -0.157 4.157 6 C -0.012 4.012 7 N -0.353 5.353 8 C 0.417 3.583 9 O -0.473 6.473 10 N -0.291 5.291 11 C 0.036 3.964 12 C -0.328 4.328 13 C -0.043 4.043 14 C -0.139 4.139 15 N -0.126 5.126 16 C 0.157 3.843 17 C -0.591 4.591 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.794 3.206 22 H -0.201 1.201 23 H -0.197 1.197 24 H -0.190 1.190 25 N -0.190 5.190 26 C 0.010 3.990 27 C -0.187 4.187 28 H 0.261 0.739 29 H 0.247 0.753 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.257 0.743 35 H 0.183 0.817 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.843 2.840 21.201 26.036 hybrid contribution 0.271 0.093 0.526 0.599 sum -14.572 2.933 21.727 26.325 Atomic orbital electron populations 1.25775 0.96678 0.98505 0.96893 1.23829 0.95168 1.02312 1.03284 1.17864 0.82350 0.93865 0.84998 1.86593 1.76294 1.57788 1.16197 1.21852 1.01965 0.99931 0.91941 1.21843 1.01726 0.80180 0.97410 1.47276 1.59616 1.10102 1.18349 1.15654 0.78471 0.84068 0.80154 1.90827 1.62582 1.16567 1.77290 1.41601 1.53463 1.11733 1.22316 1.18954 0.95324 0.92590 0.89544 1.21370 1.12014 0.97820 1.01548 1.21729 0.98635 0.87846 0.96041 1.20465 1.00958 0.92751 0.99753 1.48770 1.39280 1.04278 1.20229 1.19239 0.90759 0.95518 0.78789 1.21407 0.96239 1.45642 0.95827 0.93251 1.25724 1.03236 0.94425 0.94411 1.69991 1.38258 1.45248 1.02124 0.85427 0.78419 0.78893 0.77876 1.20091 1.19743 1.19027 1.77168 1.18800 1.19001 1.04021 1.21461 1.00646 0.92169 0.84694 1.22516 1.02188 0.95984 0.97976 0.73904 0.75329 0.88481 0.90369 0.89087 0.88967 0.74280 0.81687 0.89819 0.91245 0.87602 0.95770 0.92960 0.91735 0.89381 0.89987 0.87515 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 19.25 74.32 1.43 -0.18 16 2 C -0.25 -3.16 9.68 31.12 0.30 -2.86 16 3 C 0.25 3.44 1.09 -12.57 -0.01 3.43 16 4 O -0.56 -7.82 12.95 -148.98 -1.93 -9.75 16 5 C -0.12 -1.77 5.25 30.67 0.16 -1.61 16 6 C 0.11 1.72 6.08 86.36 0.53 2.25 16 7 N -0.62 -12.98 2.98 -837.73 -2.50 -15.47 16 8 C 0.72 21.59 8.26 179.05 1.48 23.07 16 9 O -0.59 -21.74 12.93 -3.99 -0.05 -21.79 16 10 N -0.64 -20.48 5.36 -321.23 -1.72 -22.20 16 11 C 0.29 12.18 8.11 133.31 1.08 13.26 16 12 C -0.30 -12.46 9.52 22.11 0.21 -12.25 16 13 C 0.09 3.78 6.92 41.39 0.29 4.06 16 14 C -0.08 -2.76 10.11 71.24 0.72 -2.04 16 15 N -0.34 -16.88 3.59 -338.45 -1.22 -18.09 16 16 C 0.28 14.73 5.99 85.63 0.51 15.24 16 17 C -0.55 -31.23 9.39 25.60 0.24 -30.98 16 18 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 19 C 0.02 1.27 5.46 84.66 0.46 1.73 16 20 N -0.92 -52.09 13.29 21.45 0.28 -51.80 16 21 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 N -0.36 -17.18 12.59 -54.44 -0.69 -17.86 16 26 C 0.13 2.29 6.04 86.22 0.52 2.81 16 27 C -0.15 -1.97 5.21 30.53 0.16 -1.81 16 28 H 0.24 0.76 7.80 -4.42 -0.03 0.73 16 29 H 0.40 2.50 9.03 -74.06 -0.67 1.83 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.20 7.38 -2.39 -0.02 1.18 16 33 H 0.09 1.34 5.56 -2.38 -0.01 1.32 16 34 H 0.42 10.92 6.28 -92.70 -0.58 10.33 16 35 H 0.17 6.75 5.93 -2.91 -0.02 6.73 16 36 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.07 2.40 7.07 -2.39 -0.02 2.38 16 38 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.02 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 2.76 7.04 -2.39 -0.02 2.74 16 41 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.09 1.81 7.04 -2.39 -0.02 1.80 16 43 H 0.08 1.22 7.38 -2.39 -0.02 1.20 16 44 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.31 374.54 2.08 -72.23 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.21 Total: 25.34 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 8.08 Total: 14.13 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -5.83 Total: -125.43 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.98 Total: -31.54 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.31 2.08 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.917 kcal (2) G-P(sol) polarization free energy of solvation -74.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds