Wall clock time and date at job start Tue Mar 31 2020 17:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39800 * 120.08537 * 2 1 4 4 C 1.36027 * 119.08812 * 179.72577 * 3 2 1 5 5 C 1.50693 * 120.41100 * 180.27535 * 4 3 2 6 6 N 1.35869 * 119.18217 * 0.50177 * 4 3 2 7 7 C 1.46504 * 119.93512 * 179.77292 * 6 4 3 8 8 C 1.50696 * 109.47141 * 270.39517 * 7 6 4 9 9 O 1.21283 * 120.00192 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00259 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00324 * 179.97438 * 10 8 7 12 12 H 1.09000 * 115.49049 * 9.63195 * 11 10 8 13 13 C 1.52998 * 117.44444 * 224.24432 * 11 10 8 14 14 H 1.08993 * 120.26655 * 3.82831 * 13 11 10 15 15 C 1.54390 * 118.12086 * 160.81487 * 13 11 10 16 16 N 1.48140 * 104.62293 * 87.18727 * 15 13 11 17 17 C 1.36941 * 127.84184 * 140.40878 * 16 15 13 18 18 H 1.07999 * 120.00449 * 194.50506 * 17 16 15 19 19 C 1.38816 * 119.99449 * 14.51191 * 17 16 15 20 20 N 1.31616 * 120.00006 * 9.22537 * 19 17 16 21 21 Si 1.86799 * 119.99694 * 189.22639 * 19 17 16 22 22 H 1.48500 * 109.46944 * 60.00221 * 21 19 17 23 23 H 1.48499 * 109.47010 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47480 * 299.99967 * 21 19 17 25 25 C 1.48150 * 104.32464 * 320.41587 * 16 15 13 26 26 C 1.53003 * 117.44214 * 154.99904 * 11 10 8 27 27 H 1.09000 * 120.26209 * 356.18362 * 26 11 10 28 28 C 1.34620 * 120.13085 * 359.49412 * 6 4 3 29 29 O 1.21956 * 119.52379 * 180.23475 * 28 6 4 30 30 N 1.31766 * 120.08507 * 179.97438 * 2 1 3 31 31 H 1.09010 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47564 * 300.01629 * 1 2 3 33 33 H 1.08999 * 109.47460 * 60.02621 * 1 2 3 34 34 H 1.08007 * 120.45810 * 359.97438 * 3 2 1 35 35 H 1.09009 * 109.47054 * 235.22132 * 5 4 3 36 36 H 1.09004 * 109.47052 * 355.21503 * 5 4 3 37 37 H 1.08997 * 109.47617 * 115.21870 * 5 4 3 38 38 H 1.09000 * 109.47355 * 150.39119 * 7 6 4 39 39 H 1.08999 * 109.46996 * 30.39776 * 7 6 4 40 40 H 0.97001 * 119.99652 * 0.02562 * 10 8 7 41 41 H 1.09009 * 110.40335 * 328.40301 * 15 13 11 42 42 H 1.08999 * 110.40752 * 205.97400 * 15 13 11 43 43 H 0.97007 * 119.99646 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.40762 * 158.36428 * 25 16 15 45 45 H 1.09003 * 110.40755 * 280.68194 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5678 1.1860 0.0057 5 6 4.3531 2.4721 0.0121 6 7 4.2096 -0.0116 0.0008 7 6 5.6739 -0.0563 0.0018 8 6 6.1775 -0.0554 -1.4185 9 8 5.3906 -0.0214 -2.3409 10 7 7.5022 -0.0926 -1.6640 11 6 7.9917 -0.0923 -3.0448 12 1 7.2395 0.1032 -3.8091 13 6 9.1152 -1.0701 -3.3948 14 1 9.4805 -1.7767 -2.6497 15 6 9.3396 -1.4185 -4.8820 16 7 10.2564 -0.3661 -5.3785 17 6 11.3082 -0.5080 -6.2438 18 1 12.0358 0.2838 -6.3440 19 6 11.4391 -1.6697 -6.9924 20 7 10.4648 -2.5545 -7.0101 21 14 12.9981 -1.9772 -7.9744 22 1 14.1639 -2.0095 -7.0551 23 1 12.8894 -3.2788 -8.6810 24 1 13.1806 -0.8882 -8.9673 25 6 9.7773 0.8749 -4.7263 26 6 9.4038 0.4421 -3.2922 27 1 9.9841 0.8618 -2.4705 28 6 3.5025 -1.1571 0.0008 29 8 4.0900 -2.2259 0.0008 30 7 2.1675 -1.1401 0.0005 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5141 0.8898 33 1 -0.3634 0.5134 -0.8902 34 1 1.6766 2.1501 -0.0004 35 1 5.0463 2.4788 -0.8291 36 1 3.6687 3.3161 -0.0745 37 1 4.9122 2.5519 0.9443 38 1 6.0095 -0.9627 0.5057 39 1 6.0637 0.8163 0.5260 40 1 8.1315 -0.1202 -0.9263 41 1 8.3955 -1.3878 -5.4262 42 1 9.8020 -2.4010 -4.9767 43 1 10.5562 -3.3661 -7.5335 44 1 10.5700 1.6226 -4.7034 45 1 8.9029 1.2649 -5.2474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962154693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:37 Heat of formation + Delta-G solvation = 44.828901 kcal Electronic energy + Delta-G solvation = -28012.178311 eV Core-core repulsion = 24032.698644 eV Total energy + Delta-G solvation = -3979.479666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18407 -39.88873 -38.44963 -37.56196 -36.34882 -34.60627 -32.85325 -32.56312 -31.02027 -30.30938 -28.99313 -27.33642 -27.18273 -25.56863 -23.40660 -22.67274 -21.80655 -20.78287 -20.30564 -19.33632 -18.74587 -17.78438 -17.76513 -16.88848 -16.34704 -16.15699 -15.93123 -15.35010 -14.75779 -14.51234 -14.31651 -14.11971 -13.98916 -13.75718 -13.62703 -13.54247 -13.31111 -12.87906 -12.81948 -12.68471 -12.49050 -12.28070 -11.75873 -11.62937 -11.51369 -11.08663 -11.03308 -10.96364 -10.83587 -10.47155 -10.27394 -10.23116 -10.02872 -9.84117 -9.75429 -9.24714 -8.79403 -8.69274 -8.45177 -6.91254 -5.80883 -3.16067 0.31099 1.40409 1.96464 2.32257 2.90332 3.37703 3.42009 3.43891 3.57545 3.72410 3.84068 4.13389 4.22114 4.33381 4.38239 4.46075 4.66836 4.75003 4.81049 4.83888 5.04732 5.06645 5.14340 5.15397 5.24238 5.29784 5.32544 5.49878 5.52029 5.62378 5.77135 5.82131 5.95259 6.00967 6.19107 6.19177 6.43626 6.61402 6.68461 6.81809 7.31328 7.34916 7.51340 7.60620 7.69755 7.97944 8.01163 8.18277 9.08290 9.71297 10.47162 11.32885 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002205 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.766362 B =12693.715178 C =13091.448110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.272 3.728 3 C -0.295 4.295 4 C 0.223 3.777 5 C -0.133 4.133 6 N -0.498 5.498 7 C 0.070 3.930 8 C 0.504 3.496 9 O -0.523 6.523 10 N -0.690 5.690 11 C 0.098 3.902 12 H 0.132 0.868 13 C -0.180 4.180 14 H 0.104 0.896 15 C 0.183 3.817 16 N -0.593 5.593 17 C -0.230 4.230 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.914 5.914 21 Si 0.914 3.086 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.156 3.844 26 C -0.182 4.182 27 H 0.105 0.895 28 C 0.638 3.362 29 O -0.528 6.528 30 N -0.550 5.550 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.401 0.599 41 H 0.026 0.974 42 H 0.094 0.906 43 H 0.256 0.744 44 H 0.052 0.948 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 13.751 20.568 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 C -0.320 4.320 4 C 0.105 3.895 5 C -0.190 4.190 6 N -0.213 5.213 7 C -0.057 4.057 8 C 0.288 3.712 9 O -0.398 6.398 10 N -0.340 5.340 11 C -0.008 4.008 12 H 0.149 0.851 13 C -0.201 4.201 14 H 0.122 0.878 15 C 0.057 3.943 16 N -0.316 5.316 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.209 1.209 25 C 0.029 3.971 26 C -0.203 4.203 27 H 0.123 0.877 28 C 0.341 3.659 29 O -0.402 6.402 30 N -0.285 5.285 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.235 0.765 41 H 0.043 0.957 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.709 11.889 19.675 27.843 hybrid contribution 1.640 0.512 -0.079 1.720 sum -14.069 12.401 19.596 27.124 Atomic orbital electron populations 1.20955 0.87565 1.05165 1.03747 1.22210 0.97842 0.88211 0.80715 1.21218 0.91795 1.00710 1.18298 1.21137 0.93485 0.87646 0.87245 1.21222 1.01322 0.92209 1.04265 1.46061 1.08194 1.07416 1.59656 1.21822 0.79370 1.07700 0.96847 1.20484 0.82956 0.77043 0.90767 1.90779 1.55104 1.48472 1.45468 1.45262 1.06181 1.73959 1.08567 1.21877 0.91597 1.04242 0.83037 0.85054 1.24744 1.00534 0.92483 1.02349 0.87811 1.21102 0.93159 0.95512 0.84540 1.45188 1.33711 1.01326 1.51384 1.18939 0.99568 1.02556 1.14765 0.90497 1.24912 0.98189 0.98197 0.98969 1.69884 1.30881 1.11219 1.44019 0.86171 0.82459 0.77303 0.79639 1.21075 1.21505 1.20947 1.21114 0.96814 0.90753 0.88417 1.24337 0.96251 0.99169 1.00560 0.87729 1.18149 0.85313 0.83186 0.79277 1.91009 1.68741 1.27387 1.53080 1.69824 1.05258 1.28046 1.25328 0.89591 0.89076 0.88971 0.82509 0.89027 0.88161 0.88930 0.84819 0.85909 0.76519 0.95654 0.88802 0.93375 0.92914 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.19 36.00 0.37 -0.28 16 2 C 0.27 2.64 6.84 -82.04 -0.56 2.08 16 3 C -0.29 -2.16 9.41 -39.79 -0.37 -2.53 16 4 C 0.22 1.84 6.68 -81.60 -0.55 1.30 16 5 C -0.13 -0.55 8.73 36.00 0.31 -0.23 16 6 N -0.50 -5.84 2.08 -118.41 -0.25 -6.08 16 7 C 0.07 0.66 5.36 -5.19 -0.03 0.63 16 8 C 0.50 6.78 7.64 -10.99 -0.08 6.70 16 9 O -0.52 -9.58 16.00 5.55 0.09 -9.49 16 10 N -0.69 -8.58 5.56 -53.81 -0.30 -8.88 16 11 C 0.10 1.61 5.98 -67.93 -0.41 1.21 16 12 H 0.13 2.51 7.40 -51.93 -0.38 2.12 16 13 C -0.18 -3.43 7.06 -89.21 -0.63 -4.06 16 14 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 15 C 0.18 4.49 5.72 -2.41 -0.01 4.48 16 16 N -0.59 -15.19 3.38 -168.85 -0.57 -15.76 16 17 C -0.23 -6.40 10.36 -15.06 -0.16 -6.55 16 18 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 19 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 20 N -0.91 -27.12 10.81 55.49 0.60 -26.52 16 21 Si 0.91 21.97 29.56 -169.99 -5.03 16.95 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.16 3.20 7.04 -2.41 -0.02 3.19 16 26 C -0.18 -3.07 7.06 -89.21 -0.63 -3.70 16 27 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 28 C 0.64 10.32 8.35 -88.18 -0.74 9.58 16 29 O -0.53 -10.54 16.73 4.96 0.08 -10.46 16 30 N -0.55 -8.10 10.39 -12.80 -0.13 -8.23 16 31 H 0.09 0.56 8.12 -51.92 -0.42 0.13 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.16 0.54 7.96 -52.48 -0.42 0.12 16 35 H 0.09 0.51 7.75 -51.92 -0.40 0.11 16 36 H 0.10 0.20 7.90 -51.93 -0.41 -0.21 16 37 H 0.09 0.17 7.70 -51.93 -0.40 -0.23 16 38 H 0.13 1.27 7.37 -51.93 -0.38 0.88 16 39 H 0.12 0.54 6.66 -51.93 -0.35 0.19 16 40 H 0.40 3.52 8.83 -40.82 -0.36 3.16 16 41 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.09 2.58 6.44 -51.93 -0.33 2.24 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -40.23 376.89 -9.78 -50.01 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.36 Total: 1.23 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -3.59 Total: 11.56 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.65 Total: -65.47 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.17 Total: -19.95 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -40.23 -9.78 -50.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962154693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.841 kcal (2) G-P(sol) polarization free energy of solvation -40.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds