Wall clock time and date at job start Tue Mar 31 2020 16:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38498 * 120.82109 * 2 1 4 4 C 1.39255 * 119.19383 * 179.97438 * 3 2 1 5 5 C 1.48339 * 119.57051 * 179.97438 * 4 3 2 6 6 O 1.21492 * 119.99886 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99773 * 180.02562 * 5 4 3 8 8 C 1.46507 * 120.00054 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.46669 * 324.99630 * 8 7 5 10 10 C 1.52994 * 109.47276 * 84.99559 * 8 7 5 11 11 C 1.52993 * 109.47336 * 204.99922 * 8 7 5 12 12 C 1.53497 * 114.20650 * 179.97438 * 11 8 7 13 13 N 1.47071 * 87.98547 * 220.34232 * 12 11 8 14 14 C 1.36936 * 136.06050 * 207.07978 * 13 12 11 15 15 H 1.08000 * 119.99431 * 6.59091 * 14 13 12 16 16 C 1.38811 * 120.00273 * 186.58738 * 14 13 12 17 17 N 1.31626 * 119.99822 * 6.39664 * 16 14 13 18 18 Si 1.86793 * 120.00004 * 186.39357 * 16 14 13 19 19 H 1.48501 * 109.47129 * 265.01336 * 18 16 14 20 20 H 1.48496 * 109.47391 * 25.01569 * 18 16 14 21 21 H 1.48504 * 109.47212 * 145.01489 * 18 16 14 22 22 C 1.47066 * 87.88234 * 27.34258 * 13 12 11 23 23 N 1.32747 * 120.86032 * 0.25819 * 4 3 2 24 24 C 1.31386 * 121.79729 * 359.47080 * 23 4 3 25 25 C 1.39773 * 120.71788 * 0.52686 * 24 23 4 26 26 C 1.48009 * 120.46033 * 179.76448 * 25 24 23 27 27 N 1.34776 * 120.00177 * 6.28167 * 26 25 24 28 28 O 1.21527 * 119.99534 * 186.28464 * 26 25 24 29 29 H 1.09000 * 109.46925 * 96.57999 * 1 2 3 30 30 H 1.08999 * 109.46751 * 216.57062 * 1 2 3 31 31 H 1.08994 * 109.47219 * 336.57827 * 1 2 3 32 32 H 1.08000 * 120.40260 * 359.96006 * 3 2 1 33 33 H 0.97004 * 120.00546 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.47214 * 60.00404 * 10 8 7 35 35 H 1.08996 * 109.47285 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47782 * 300.00575 * 10 8 7 37 37 H 1.09007 * 113.41454 * 313.19872 * 11 8 7 38 38 H 1.09004 * 113.46387 * 105.56671 * 12 11 8 39 39 H 1.08997 * 113.52150 * 335.13189 * 12 11 8 40 40 H 0.96992 * 119.99704 * 180.02562 * 17 16 14 41 41 H 1.09000 * 113.46825 * 87.43803 * 22 13 12 42 42 H 1.09006 * 113.46771 * 217.87340 * 22 13 12 43 43 H 1.07998 * 119.64114 * 180.26901 * 24 23 4 44 44 H 0.96993 * 119.99795 * 0.02562 * 27 26 25 45 45 H 0.96996 * 119.99997 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1894 0.0000 4 6 3.6086 1.1498 0.0005 5 6 4.3770 2.4187 0.0000 6 8 3.7916 3.4833 -0.0005 7 7 5.7244 2.3905 0.0000 8 6 6.4834 3.6436 0.0000 9 1 5.9515 4.3904 -0.5895 10 6 6.6399 4.1451 1.4369 11 6 7.8658 3.4027 -0.6096 12 6 8.7562 4.6518 -0.6637 13 7 9.1998 4.2144 -1.9959 14 6 10.3209 4.3783 -2.7649 15 1 11.1911 4.8681 -2.3534 16 6 10.3391 3.9148 -4.0733 17 7 9.2412 3.4322 -4.6157 18 14 11.9214 3.9762 -5.0640 19 1 11.9480 5.2180 -5.8779 20 1 13.0844 3.9645 -4.1407 21 1 11.9898 2.7948 -5.9612 22 6 7.9068 3.5289 -2.1414 23 7 4.2569 -0.0086 -0.0041 24 6 3.6205 -1.1580 0.0010 25 6 2.2235 -1.2007 0.0005 26 6 1.5125 -2.4989 0.0010 27 7 2.2062 -3.6472 0.1296 28 8 0.3031 -2.5292 -0.1147 29 1 -0.3633 -0.1178 -1.0209 30 1 -0.3633 -0.8253 0.6123 31 1 -0.3633 0.9429 0.4085 32 1 1.6967 2.1360 -0.0006 33 1 6.1918 1.5405 0.0007 34 1 7.1718 3.3983 2.0264 35 1 7.2042 5.0776 1.4369 36 1 5.6551 4.3167 1.8713 37 1 8.3633 2.5154 -0.2178 38 1 9.5521 4.6501 0.0811 39 1 8.1947 5.5859 -0.6782 40 1 9.2539 3.1081 -5.5298 41 1 7.1206 4.1665 -2.5456 42 1 7.9791 2.5705 -2.6557 43 1 4.1831 -2.0799 0.0014 44 1 3.1714 -3.6228 0.2222 45 1 1.7402 -4.4978 0.1303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970449656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:41 Heat of formation + Delta-G solvation = 18.457389 kcal Electronic energy + Delta-G solvation = -27663.978877 eV Core-core repulsion = 23683.355656 eV Total energy + Delta-G solvation = -3980.623221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.29339 -39.91184 -38.96108 -38.06440 -35.02421 -34.64659 -34.03290 -32.26372 -31.77566 -30.28812 -28.29911 -27.55101 -25.80516 -24.58298 -23.95826 -23.22839 -22.03973 -21.15698 -20.29418 -19.28077 -18.38524 -17.92931 -17.40494 -16.73155 -16.54396 -15.75105 -15.67060 -15.50634 -14.98414 -14.98230 -14.80336 -14.22382 -13.89017 -13.86250 -13.52832 -13.26572 -13.12375 -12.99819 -12.94636 -12.58423 -12.42040 -12.13974 -11.68996 -11.40762 -11.20278 -10.99157 -10.77405 -10.60967 -10.38946 -10.31483 -10.24027 -9.98615 -9.90716 -9.79085 -9.68764 -9.63226 -9.21324 -8.83715 -8.77874 -6.88034 -5.78332 -3.09454 -0.07897 0.78219 2.13407 2.82975 2.92587 3.06490 3.38731 3.43619 3.46032 3.58336 3.74706 4.18094 4.28638 4.41034 4.45175 4.56467 4.81574 5.06409 5.10058 5.24403 5.31348 5.33783 5.37054 5.42070 5.53306 5.67520 5.70229 5.78323 5.92944 5.94304 6.03957 6.10090 6.22077 6.27872 6.36370 6.40558 6.54191 6.66780 6.76870 6.77495 7.19436 7.23359 7.34715 7.52686 7.65527 7.71781 7.96604 8.21613 9.03240 9.69874 10.64797 11.40258 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.002397 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.794990 B =11676.818266 C =12720.124954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.124 4.124 4 C 0.116 3.884 5 C 0.566 3.434 6 O -0.532 6.532 7 N -0.692 5.692 8 C 0.151 3.849 9 H 0.090 0.910 10 C -0.158 4.158 11 C -0.153 4.153 12 C 0.130 3.870 13 N -0.610 5.610 14 C -0.219 4.219 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.918 5.918 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.280 1.280 21 H -0.290 1.290 22 C 0.170 3.830 23 N -0.464 5.464 24 C 0.140 3.860 25 C -0.187 4.187 26 C 0.571 3.429 27 N -0.848 5.848 28 O -0.530 6.530 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.410 0.590 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.034 0.966 40 H 0.254 0.746 41 H 0.029 0.971 42 H 0.059 0.941 43 H 0.165 0.835 44 H 0.402 0.598 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.988 -12.852 13.790 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 C -0.145 4.145 4 C -0.022 4.022 5 C 0.349 3.651 6 O -0.408 6.408 7 N -0.342 5.342 8 C 0.047 3.953 9 H 0.108 0.892 10 C -0.216 4.216 11 C -0.174 4.174 12 C 0.003 3.997 13 N -0.336 5.336 14 C -0.346 4.346 15 H 0.099 0.901 16 C -0.205 4.205 17 N -0.565 5.565 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.205 1.205 21 H -0.216 1.216 22 C 0.044 3.956 23 N -0.175 5.175 24 C -0.021 4.021 25 C -0.193 4.193 26 C 0.356 3.644 27 N -0.413 5.413 28 O -0.407 6.407 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.182 0.818 44 H 0.232 0.768 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -14.998 -11.864 13.378 23.338 hybrid contribution 0.534 -0.760 -0.737 1.185 sum -14.464 -12.624 12.642 22.986 Atomic orbital electron populations 1.21116 0.88499 1.03907 1.04364 1.20507 0.97835 0.90854 0.89985 1.22097 0.93761 0.99627 0.98983 1.21522 0.91795 0.92519 0.96316 1.17837 0.82802 0.87006 0.77444 1.90788 1.69746 1.29964 1.50316 1.45976 1.05293 1.11021 1.71897 1.21113 0.92035 0.85410 0.96742 0.89167 1.22128 1.01706 1.01614 0.96180 1.23675 0.93042 1.00479 1.00158 1.22316 0.94167 0.93722 0.89523 1.45672 1.13677 1.58962 1.15273 1.18942 0.89159 1.33799 0.92738 0.90088 1.24841 0.97404 1.01864 0.96389 1.69859 1.25709 1.46833 1.14098 0.86100 0.82475 0.77210 0.79969 1.21619 1.20506 1.21612 1.22041 0.87451 0.97137 0.88971 1.67589 1.40494 0.97709 1.11702 1.22909 0.90110 0.96363 0.92744 1.20928 0.95274 0.94267 1.08824 1.18020 0.86734 0.83940 0.75717 1.43744 1.11946 1.08604 1.76986 1.90792 1.13628 1.87139 1.49135 0.89626 0.88332 0.91246 0.82525 0.75347 0.92578 0.91181 0.92726 0.88890 0.94052 0.94891 0.93651 0.95362 0.92273 0.81802 0.76800 0.76068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.82 36.00 0.32 -0.73 16 2 C 0.02 0.16 5.95 -103.93 -0.62 -0.46 16 3 C -0.12 -1.37 9.30 -39.11 -0.36 -1.73 16 4 C 0.12 1.44 6.75 -82.94 -0.56 0.88 16 5 C 0.57 8.36 7.78 -12.10 -0.09 8.26 16 6 O -0.53 -9.18 15.97 5.37 0.09 -9.10 16 7 N -0.69 -9.80 5.07 -54.60 -0.28 -10.08 16 8 C 0.15 2.32 2.47 -67.93 -0.17 2.16 16 9 H 0.09 1.58 7.32 -51.93 -0.38 1.20 16 10 C -0.16 -2.07 9.29 37.15 0.35 -1.72 16 11 C -0.15 -2.73 3.67 -89.97 -0.33 -3.06 16 12 C 0.13 2.60 7.33 -8.51 -0.06 2.54 16 13 N -0.61 -15.74 3.76 -184.59 -0.69 -16.44 16 14 C -0.22 -6.18 10.73 -15.06 -0.16 -6.35 16 15 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -27.60 11.81 55.49 0.66 -26.95 16 18 Si 0.91 22.18 29.56 -169.99 -5.02 17.16 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.17 3.98 6.80 -8.38 -0.06 3.92 16 23 N -0.46 -5.13 9.52 -9.48 -0.09 -5.22 16 24 C 0.14 1.16 10.69 -17.17 -0.18 0.98 16 25 C -0.19 -1.66 5.90 -104.72 -0.62 -2.28 16 26 C 0.57 4.74 8.00 -12.26 -0.10 4.64 16 27 N -0.85 -3.58 8.83 30.57 0.27 -3.31 16 28 O -0.53 -5.98 14.33 5.34 0.08 -5.91 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.92 5.97 -51.93 -0.31 0.61 16 31 H 0.07 0.48 8.06 -51.93 -0.42 0.07 16 32 H 0.16 1.64 7.63 -52.49 -0.40 1.24 16 33 H 0.41 5.31 7.93 -40.82 -0.32 4.98 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.03 0.71 7.93 -51.93 -0.41 0.29 16 42 H 0.06 1.53 7.58 -51.93 -0.39 1.13 16 43 H 0.16 0.69 6.47 -52.49 -0.34 0.35 16 44 H 0.40 0.67 6.93 -40.82 -0.28 0.39 16 45 H 0.41 1.21 8.93 -40.82 -0.36 0.85 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -35.70 376.34 -8.17 -43.87 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.09 Total: 3.55 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -2.75 Total: 6.73 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.14 Total: -61.98 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.16 Total: -15.00 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.70 -8.17 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970449656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.325 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds