Wall clock time and date at job start Tue Mar 31 2020 16:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38499 * 120.81840 * 2 1 4 4 C 1.39255 * 119.18892 * 179.97438 * 3 2 1 5 5 C 1.48334 * 119.57264 * 179.97438 * 4 3 2 6 6 O 1.21494 * 119.99717 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00674 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00125 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.46949 * 35.00520 * 8 7 5 10 10 C 1.53000 * 109.47493 * 275.00307 * 8 7 5 11 11 C 1.52999 * 109.47006 * 155.00159 * 8 7 5 12 12 C 1.53942 * 113.74420 * 278.74299 * 11 8 7 13 13 N 1.47809 * 86.03932 * 222.08251 * 12 11 8 14 14 C 1.36937 * 134.45971 * 204.64360 * 13 12 11 15 15 H 1.08003 * 120.00482 * 179.86603 * 14 13 12 16 16 C 1.38818 * 119.99814 * 359.86598 * 14 13 12 17 17 N 1.31616 * 119.99947 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99902 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46776 * 60.00132 * 18 16 14 20 20 H 1.48499 * 109.47092 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47095 * 300.00022 * 18 16 14 22 22 C 1.47585 * 91.05000 * 24.54926 * 13 12 11 23 23 N 1.32741 * 120.86204 * 0.27864 * 4 3 2 24 24 C 1.31391 * 121.79800 * 359.43261 * 23 4 3 25 25 C 1.39763 * 120.71863 * 0.56361 * 24 23 4 26 26 C 1.48005 * 120.46638 * 179.75092 * 25 24 23 27 27 N 1.34773 * 119.99856 * 6.09983 * 26 25 24 28 28 O 1.21529 * 120.00038 * 186.10556 * 26 25 24 29 29 H 1.08999 * 109.47221 * 96.36688 * 1 2 3 30 30 H 1.09003 * 109.47156 * 216.36855 * 1 2 3 31 31 H 1.09005 * 109.47522 * 336.36827 * 1 2 3 32 32 H 1.07996 * 120.40242 * 359.95889 * 3 2 1 33 33 H 0.97003 * 119.99142 * 359.73295 * 7 5 4 34 34 H 1.09001 * 109.46998 * 60.00040 * 10 8 7 35 35 H 1.08993 * 109.47592 * 180.02562 * 10 8 7 36 36 H 1.09006 * 109.46809 * 300.00307 * 10 8 7 37 37 H 1.09007 * 112.94344 * 50.33402 * 11 8 7 38 38 H 1.08998 * 113.77271 * 336.34860 * 12 11 8 39 39 H 1.09005 * 113.76958 * 107.74217 * 12 11 8 40 40 H 0.97001 * 119.99818 * 180.02562 * 17 16 14 41 41 H 1.09003 * 113.76924 * 221.15532 * 22 13 12 42 42 H 1.08990 * 113.87349 * 89.76706 * 22 13 12 43 43 H 1.08004 * 119.64182 * 180.27253 * 24 23 4 44 44 H 0.97004 * 120.00306 * 0.02562 * 27 26 25 45 45 H 0.97004 * 120.00257 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1894 0.0000 4 6 3.6085 1.1498 0.0005 5 6 4.3770 2.4186 0.0000 6 8 3.7917 3.4832 -0.0005 7 7 5.7245 2.3905 0.0000 8 6 6.4833 3.6436 0.0000 9 1 5.9514 4.3904 0.5895 10 6 6.6399 4.1451 -1.4370 11 6 7.8658 3.4026 0.6096 12 6 7.8731 3.4036 2.1490 13 7 9.1210 4.1884 2.0404 14 6 10.2038 4.3858 2.8551 15 1 11.0123 5.0254 2.5332 16 6 10.2622 3.7639 4.0947 17 7 9.2771 2.9841 4.4869 18 14 11.7396 4.0327 5.2058 19 1 11.8637 5.4780 5.5233 20 1 11.5596 3.2638 6.4634 21 1 12.9697 3.5704 4.5142 22 6 8.7326 4.6716 0.7010 23 7 4.2568 -0.0085 -0.0045 24 6 3.6205 -1.1580 0.0009 25 6 2.2235 -1.2008 0.0005 26 6 1.5124 -2.4988 0.0010 27 7 2.2065 -3.6473 0.1260 28 8 0.3027 -2.5290 -0.1113 29 1 -0.3633 -0.1140 -1.0213 30 1 -0.3633 -0.8275 0.6094 31 1 -0.3634 0.9415 0.4120 32 1 1.6966 2.1360 -0.0007 33 1 6.1917 1.5404 0.0043 34 1 5.6550 4.3167 -1.8713 35 1 7.2048 5.0771 -1.4371 36 1 7.1717 3.3982 -2.0265 37 1 8.3817 2.5495 0.1688 38 1 7.0442 3.9555 2.5920 39 1 8.0109 2.4156 2.5883 40 1 9.3178 2.5498 5.3533 41 1 9.5554 4.6940 -0.0136 42 1 8.1567 5.5968 0.7158 43 1 4.1830 -2.0800 0.0010 44 1 3.1720 -3.6232 0.2160 45 1 1.7405 -4.4981 0.1260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970449657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:45 Heat of formation + Delta-G solvation = 15.543004 kcal Electronic energy + Delta-G solvation = -27711.872643 eV Core-core repulsion = 23731.123045 eV Total energy + Delta-G solvation = -3980.749598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28129 -39.89059 -38.91219 -37.92696 -34.97979 -34.62451 -34.01751 -32.22702 -31.75108 -30.25675 -28.28780 -27.50949 -25.80020 -24.69758 -23.92449 -23.20554 -22.00915 -21.12267 -20.27622 -19.20121 -18.37149 -17.90923 -17.38560 -16.70888 -16.55090 -15.83254 -15.57284 -15.48001 -15.05939 -14.92802 -14.78964 -14.22388 -13.87040 -13.83748 -13.51283 -13.21074 -13.13008 -13.00435 -12.90625 -12.57783 -12.41060 -12.11438 -11.65612 -11.33354 -11.27693 -10.89846 -10.73339 -10.59504 -10.37141 -10.30627 -10.22991 -9.94256 -9.89582 -9.75039 -9.66336 -9.61978 -9.39192 -8.82164 -8.77796 -6.85810 -5.74708 -3.06972 -0.06686 0.79433 2.14529 2.84064 2.93850 3.08158 3.40426 3.44399 3.45699 3.59672 3.76037 4.19348 4.29830 4.42192 4.46600 4.57624 4.82855 5.08066 5.11565 5.28177 5.29555 5.32591 5.38095 5.42200 5.54428 5.66049 5.71173 5.80882 5.94304 5.95930 6.03467 6.11231 6.23875 6.29165 6.35953 6.40889 6.58144 6.65844 6.78183 6.79006 7.24624 7.25564 7.38276 7.57886 7.67039 7.72903 7.99959 8.22974 9.06345 9.72768 10.62214 11.42211 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.002440 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.913637 B =11471.275526 C =12590.085691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.124 4.124 4 C 0.116 3.884 5 C 0.566 3.434 6 O -0.532 6.532 7 N -0.692 5.692 8 C 0.148 3.852 9 H 0.089 0.911 10 C -0.158 4.158 11 C -0.146 4.146 12 C 0.171 3.829 13 N -0.613 5.613 14 C -0.223 4.223 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.131 3.869 23 N -0.463 5.463 24 C 0.141 3.859 25 C -0.188 4.188 26 C 0.571 3.429 27 N -0.848 5.848 28 O -0.530 6.530 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.411 0.589 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.165 0.835 44 H 0.403 0.597 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 -11.966 -12.689 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 C -0.145 4.145 4 C -0.021 4.021 5 C 0.349 3.651 6 O -0.409 6.409 7 N -0.341 5.341 8 C 0.043 3.957 9 H 0.107 0.893 10 C -0.216 4.216 11 C -0.166 4.166 12 C 0.046 3.954 13 N -0.339 5.339 14 C -0.351 4.351 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.004 3.996 23 N -0.175 5.175 24 C -0.021 4.021 25 C -0.193 4.193 26 C 0.356 3.644 27 N -0.413 5.413 28 O -0.408 6.408 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.182 0.818 44 H 0.232 0.768 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.001 -10.998 -12.468 22.393 hybrid contribution 0.526 -0.665 0.825 1.184 sum -14.475 -11.663 -11.643 21.934 Atomic orbital electron populations 1.21122 0.88511 1.04049 1.04231 1.20506 0.97826 0.90855 0.90004 1.22094 0.93762 0.99618 0.99017 1.21520 0.91790 0.92528 0.96294 1.17841 0.82816 0.87000 0.77438 1.90786 1.69764 1.29970 1.50373 1.45969 1.05278 1.11046 1.71839 1.21207 0.92343 0.85424 0.96712 0.89250 1.22131 1.01686 1.01582 0.96247 1.23830 0.92755 1.00233 0.99827 1.22295 0.87499 0.97259 0.88396 1.45988 1.17967 1.54166 1.15762 1.18978 0.95010 1.24483 0.96597 0.90331 1.24784 0.98213 0.99992 0.97511 1.69810 1.31794 1.34264 1.20960 0.86208 0.81974 0.77545 0.80068 1.21220 1.21590 1.21102 1.22487 0.94648 0.93665 0.88796 1.67591 1.40485 0.97705 1.11677 1.22910 0.90109 0.96372 0.92715 1.20924 0.95276 0.94267 1.08838 1.18018 0.86733 0.83940 0.75703 1.43750 1.11943 1.08584 1.76987 1.90789 1.13595 1.87141 1.49226 0.89734 0.88258 0.91213 0.82544 0.75319 0.92743 0.91224 0.92601 0.89252 0.95655 0.90987 0.93652 0.93727 0.94742 0.81793 0.76769 0.76072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.83 36.01 0.32 -0.74 16 2 C 0.02 0.16 5.95 -103.93 -0.62 -0.45 16 3 C -0.12 -1.38 9.30 -39.11 -0.36 -1.75 16 4 C 0.12 1.46 6.75 -82.94 -0.56 0.90 16 5 C 0.57 8.44 7.78 -12.11 -0.09 8.34 16 6 O -0.53 -9.25 15.97 5.37 0.09 -9.16 16 7 N -0.69 -9.91 5.07 -54.60 -0.28 -10.19 16 8 C 0.15 2.28 2.38 -67.93 -0.16 2.12 16 9 H 0.09 1.57 7.42 -51.93 -0.39 1.18 16 10 C -0.16 -2.08 9.31 37.16 0.35 -1.74 16 11 C -0.15 -2.62 3.46 -89.70 -0.31 -2.93 16 12 C 0.17 3.99 7.08 -2.84 -0.02 3.97 16 13 N -0.61 -15.74 3.70 -177.70 -0.66 -16.40 16 14 C -0.22 -6.29 10.70 -15.06 -0.16 -6.46 16 15 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.92 -27.44 11.39 55.49 0.63 -26.81 16 18 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.13 2.61 7.64 -2.96 -0.02 2.58 16 23 N -0.46 -5.20 9.52 -9.48 -0.09 -5.29 16 24 C 0.14 1.18 10.69 -17.17 -0.18 1.00 16 25 C -0.19 -1.69 5.90 -104.73 -0.62 -2.31 16 26 C 0.57 4.80 8.00 -12.26 -0.10 4.71 16 27 N -0.85 -3.72 8.83 30.56 0.27 -3.45 16 28 O -0.53 -6.02 14.32 5.34 0.08 -5.94 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.96 5.95 -51.93 -0.31 0.65 16 31 H 0.07 0.50 8.06 -51.93 -0.42 0.09 16 32 H 0.16 1.65 7.63 -52.49 -0.40 1.25 16 33 H 0.41 5.42 7.92 -40.82 -0.32 5.10 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.87 7.51 -51.93 -0.39 0.48 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.03 0.63 7.99 -51.93 -0.41 0.21 16 39 H 0.07 1.86 7.17 -51.93 -0.37 1.49 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.17 0.72 6.46 -52.48 -0.34 0.38 16 44 H 0.40 0.77 6.93 -40.82 -0.28 0.49 16 45 H 0.41 1.27 8.93 -40.82 -0.36 0.91 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -35.42 375.87 -8.04 -43.47 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.08 Total: 3.99 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -2.64 Total: 6.91 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.12 Total: -62.13 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.16 Total: -15.10 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.42 -8.04 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970449657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.012 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds