Wall clock time and date at job start Tue Mar 31 2020 16:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32170 * 120.53900 * 2 1 4 4 C 1.31851 * 120.96832 * 180.02562 * 3 2 1 5 5 N 1.31888 * 122.09720 * 0.02562 * 4 3 2 6 6 C 1.32130 * 120.96438 * 359.69435 * 5 4 3 7 7 C 1.39927 * 120.53864 * 180.02562 * 2 1 3 8 8 C 1.47832 * 120.93980 * 359.97438 * 7 2 1 9 9 O 1.21547 * 120.00006 * 323.97802 * 8 7 2 10 10 N 1.34776 * 120.00021 * 143.97355 * 8 7 2 11 11 C 1.47498 * 125.66302 * 355.07759 * 10 8 7 12 12 C 1.55020 * 104.89608 * 203.99996 * 11 10 8 13 13 C 1.54503 * 101.52469 * 323.62515 * 12 11 10 14 14 C 1.47189 * 125.66476 * 175.05601 * 10 8 7 15 15 C 1.52518 * 110.05507 * 153.10658 * 13 12 11 16 16 N 1.47298 * 108.38943 * 72.02041 * 15 13 12 17 17 C 1.36935 * 121.06426 * 229.38903 * 16 15 13 18 18 H 1.07995 * 120.00600 * 152.92471 * 17 16 15 19 19 C 1.38814 * 119.99576 * 332.92934 * 17 16 15 20 20 N 1.31621 * 120.00089 * 159.47836 * 19 17 16 21 21 Si 1.86797 * 120.00107 * 339.46823 * 19 17 16 22 22 H 1.48503 * 109.47015 * 90.57732 * 21 19 17 23 23 H 1.48502 * 109.47294 * 210.57582 * 21 19 17 24 24 H 1.48496 * 109.47343 * 330.57557 * 21 19 17 25 25 C 1.47174 * 117.88088 * 49.40964 * 16 15 13 26 26 C 1.53278 * 108.54117 * 308.90011 * 25 16 15 27 27 O 1.42070 * 110.33641 * 276.05042 * 13 12 11 28 28 H 1.08998 * 109.46919 * 264.39648 * 1 2 3 29 29 H 1.09005 * 109.47371 * 24.39405 * 1 2 3 30 30 H 1.09003 * 109.47434 * 144.39544 * 1 2 3 31 31 H 1.07994 * 118.95035 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.54164 * 180.31495 * 6 5 4 33 33 H 1.09000 * 110.35500 * 85.14626 * 11 10 8 34 34 H 1.08999 * 110.35820 * 322.85462 * 11 10 8 35 35 H 1.09004 * 111.01273 * 81.68922 * 12 11 10 36 36 H 1.09007 * 111.01337 * 205.52386 * 12 11 10 37 37 H 1.08997 * 109.90959 * 59.14767 * 14 10 8 38 38 H 1.08995 * 110.06118 * 297.96352 * 14 10 8 39 39 H 1.09000 * 109.67927 * 191.74621 * 15 13 12 40 40 H 1.09001 * 109.67937 * 312.25861 * 15 13 12 41 41 H 0.96999 * 119.99929 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.62468 * 68.61129 * 25 16 15 43 43 H 1.08997 * 109.62339 * 188.99093 * 25 16 15 44 44 H 1.09005 * 109.51139 * 172.80194 * 26 25 16 45 45 H 1.09002 * 109.50875 * 292.93971 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1482 -0.0005 5 7 4.2062 0.0362 -0.0015 6 6 3.6164 -1.1462 0.0039 7 6 2.2179 -1.2052 -0.0005 8 6 1.5121 -2.5041 -0.0006 9 8 0.4741 -2.6317 0.6189 10 7 2.0194 -3.5468 -0.6875 11 6 3.2078 -3.5051 -1.5602 12 6 3.0176 -4.6839 -2.5489 13 6 2.3585 -5.7456 -1.6403 14 6 1.4800 -4.9162 -0.6910 15 6 1.5010 -6.6899 -2.4764 16 7 2.3956 -7.5584 -3.2606 17 6 2.2122 -7.7302 -4.6067 18 1 3.0523 -7.9762 -5.2392 19 6 0.9463 -7.5882 -5.1583 20 7 0.8124 -7.3495 -6.4458 21 14 -0.5672 -7.7360 -4.0736 22 1 -0.9313 -6.3962 -3.5466 23 1 -1.6968 -8.2780 -4.8709 24 1 -0.2770 -8.6513 -2.9409 25 6 3.4926 -8.2362 -2.5513 26 6 4.2661 -7.1918 -1.7385 27 8 3.3503 -6.4609 -0.9171 28 1 -0.3633 -0.1003 1.0227 29 1 -0.3634 0.9359 -0.4244 30 1 -0.3634 -0.8355 -0.5983 31 1 4.0127 2.0971 -0.0001 32 1 4.2038 -2.0524 0.0082 33 1 4.1149 -3.6458 -0.9725 34 1 3.2482 -2.5595 -2.1009 35 1 2.3547 -4.4042 -3.3677 36 1 3.9775 -5.0346 -2.9282 37 1 0.4506 -4.9088 -1.0494 38 1 1.5200 -5.3364 0.3139 39 1 0.8798 -7.2995 -1.8203 40 1 0.8673 -6.1118 -3.1490 41 1 -0.0722 -7.2499 -6.8312 42 1 3.0834 -8.9920 -1.8809 43 1 4.1584 -8.7090 -3.2732 44 1 5.0010 -7.6925 -1.1080 45 1 4.7741 -6.5061 -2.4166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972279249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:00 Heat of formation + Delta-G solvation = 18.387613 kcal Electronic energy + Delta-G solvation = -29677.655149 eV Core-core repulsion = 25697.028902 eV Total energy + Delta-G solvation = -3980.626247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.63440 -40.35706 -38.90753 -36.51490 -34.79679 -34.67367 -33.18513 -31.68592 -31.65339 -29.92849 -29.06945 -27.86637 -26.30896 -25.13432 -23.88795 -23.25721 -23.04403 -21.39759 -19.99696 -19.31520 -18.26872 -17.46688 -17.34794 -17.11609 -16.44160 -15.94518 -15.60181 -15.23385 -15.01946 -14.80980 -14.33453 -14.24832 -14.06943 -13.84755 -13.48835 -13.27620 -13.20141 -13.04051 -12.67398 -12.60949 -12.44779 -12.32986 -11.95220 -11.86389 -11.62051 -11.30138 -11.21792 -10.93483 -10.81220 -10.49933 -10.32379 -10.12351 -9.86834 -9.83290 -9.64212 -9.63449 -9.48490 -8.78689 -8.66659 -7.12505 -6.09014 -3.46909 0.19020 0.67429 2.49481 2.70410 3.20563 3.40173 3.40782 3.41744 3.66518 3.74971 3.86482 4.02531 4.17427 4.38966 4.52234 4.57840 4.61339 4.89850 4.97205 5.04822 5.11361 5.21783 5.28283 5.38742 5.38901 5.47267 5.49150 5.57773 5.67212 5.71965 5.73078 5.82534 5.96611 6.00851 6.02080 6.10392 6.17000 6.26723 6.36160 6.37814 6.54074 6.60509 7.28062 7.54291 7.65958 7.74225 7.88477 8.17177 8.73981 9.55136 9.91308 11.06357 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.003622 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.762773 B = 7729.067708 C = 8351.211640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.231 3.769 3 N -0.524 5.524 4 C 0.314 3.686 5 N -0.526 5.526 6 C 0.184 3.816 7 C -0.235 4.235 8 C 0.583 3.417 9 O -0.527 6.527 10 N -0.606 5.606 11 C 0.095 3.905 12 C -0.144 4.144 13 C 0.095 3.905 14 C 0.124 3.876 15 C 0.112 3.888 16 N -0.604 5.604 17 C -0.263 4.263 18 H 0.089 0.911 19 C 0.028 3.972 20 N -0.903 5.903 21 Si 0.875 3.125 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.270 1.270 25 C 0.111 3.889 26 C 0.044 3.956 27 O -0.372 6.372 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.202 0.798 32 H 0.176 0.824 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.085 0.915 41 H 0.264 0.736 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 12.241 12.294 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.084 3.916 3 N -0.239 5.239 4 C 0.027 3.973 5 N -0.240 5.240 6 C 0.018 3.982 7 C -0.243 4.243 8 C 0.370 3.630 9 O -0.404 6.404 10 N -0.339 5.339 11 C -0.027 4.027 12 C -0.182 4.182 13 C 0.053 3.947 14 C 0.002 3.998 15 C -0.014 4.014 16 N -0.329 5.329 17 C -0.391 4.391 18 H 0.106 0.894 19 C -0.172 4.172 20 N -0.545 5.545 21 Si 0.705 3.295 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.195 1.195 25 C -0.014 4.014 26 C -0.034 4.034 27 O -0.291 6.291 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.218 0.782 32 H 0.193 0.807 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.914 13.107 12.676 19.169 hybrid contribution -1.147 -0.956 0.163 1.502 sum 4.767 12.151 12.839 18.308 Atomic orbital electron populations 1.20893 0.86727 1.04058 1.04731 1.21919 0.98034 0.86500 0.85147 1.68408 1.10329 1.29509 1.15604 1.25224 0.86753 0.97332 0.88009 1.68496 1.41375 0.98888 1.15242 1.23715 0.90828 0.96876 0.86831 1.21570 0.96503 0.95903 1.10315 1.17358 0.84217 0.82125 0.79301 1.90803 1.22618 1.83282 1.43674 1.48438 1.29849 1.09491 1.46112 1.22637 0.87815 1.00213 0.92044 1.23219 1.03756 0.93772 0.97446 1.22322 0.89800 0.91601 0.90999 1.21850 0.97418 0.79635 1.00940 1.21802 0.92887 0.92500 0.94196 1.44372 1.32491 1.50228 1.05804 1.18870 0.94325 1.45447 0.80412 0.89350 1.25258 0.97315 0.99328 0.95259 1.69817 1.23352 1.49939 1.11439 0.87092 0.83791 0.78055 0.80548 1.21383 1.22741 1.19480 1.21640 0.91129 0.93448 0.95219 1.23164 0.91464 0.94386 0.94366 1.87699 1.43054 1.64925 1.33443 0.88570 0.89965 0.89388 0.78198 0.80731 0.90730 0.90734 0.89025 0.88508 0.89580 0.89841 0.94672 0.89726 0.92562 0.95026 0.90815 0.89269 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 8.93 36.00 0.32 -0.81 16 2 C 0.23 2.74 6.86 -81.82 -0.56 2.18 16 3 N -0.52 -5.89 10.36 -10.48 -0.11 -6.00 16 4 C 0.31 3.04 12.27 -92.03 -1.13 1.91 16 5 N -0.53 -5.63 10.42 -14.24 -0.15 -5.78 16 6 C 0.18 1.98 9.48 -16.77 -0.16 1.82 16 7 C -0.24 -2.87 5.43 -104.69 -0.57 -3.44 16 8 C 0.58 8.26 7.02 -12.34 -0.09 8.17 16 9 O -0.53 -8.71 15.36 5.32 0.08 -8.63 16 10 N -0.61 -8.37 3.33 -171.79 -0.57 -8.95 16 11 C 0.10 1.14 5.24 -2.43 -0.01 1.13 16 12 C -0.14 -2.14 5.91 -24.88 -0.15 -2.29 16 13 C 0.09 1.56 0.83 -89.74 -0.07 1.49 16 14 C 0.12 1.90 6.25 -3.33 -0.02 1.88 16 15 C 0.11 2.29 2.92 -3.85 -0.01 2.28 16 16 N -0.60 -13.25 2.71 -172.18 -0.47 -13.72 16 17 C -0.26 -6.83 10.09 -15.06 -0.15 -6.99 16 18 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 19 C 0.03 0.77 5.24 -17.43 -0.09 0.68 16 20 N -0.90 -26.40 13.97 55.49 0.78 -25.62 16 21 Si 0.88 21.41 24.30 -169.99 -4.13 17.28 16 22 H -0.29 -6.70 6.55 56.52 0.37 -6.33 16 23 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.27 -6.56 6.69 56.52 0.38 -6.18 16 25 C 0.11 2.00 6.72 -3.53 -0.02 1.97 16 26 C 0.04 0.64 6.76 37.30 0.25 0.90 16 27 O -0.37 -6.00 10.23 -35.23 -0.36 -6.36 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.02 6.86 -51.93 -0.36 0.66 16 31 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.18 1.58 5.84 -52.49 -0.31 1.27 16 33 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 34 H 0.07 0.81 7.26 -51.93 -0.38 0.43 16 35 H 0.09 1.52 7.86 -51.93 -0.41 1.11 16 36 H 0.10 1.42 5.98 -51.92 -0.31 1.11 16 37 H 0.09 1.38 7.79 -51.93 -0.40 0.97 16 38 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 39 H 0.04 0.74 6.87 -51.93 -0.36 0.39 16 40 H 0.08 1.88 4.63 -51.93 -0.24 1.64 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.77 6.13 -51.93 -0.32 0.45 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -31.49 350.17 -8.12 -39.60 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.00 Total: 2.02 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -2.46 Total: 10.88 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.52 Total: -60.07 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.28 Total: -14.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.13 Total: 17.28 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.49 -8.12 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972279249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.989 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds