Wall clock time and date at job start Tue Mar 31 2020 17:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32221 * 120.50903 * 2 1 4 4 C 1.31905 * 121.14014 * 180.02562 * 3 2 1 5 5 N 1.31757 * 122.19571 * 359.97438 * 4 3 2 6 6 C 1.32744 * 120.87240 * 0.02562 * 5 4 3 7 7 O 1.35275 * 120.61247 * 180.02562 * 6 5 4 8 8 C 1.39771 * 120.50939 * 180.02562 * 2 1 3 9 9 C 1.47538 * 120.97661 * 359.95281 * 8 2 1 10 10 O 1.21588 * 119.99608 * 90.00655 * 9 8 2 11 11 N 1.34773 * 120.00218 * 269.99649 * 9 8 2 12 12 C 1.46494 * 120.00136 * 180.02562 * 11 9 8 13 13 C 1.51231 * 111.07525 * 78.36852 * 12 11 9 14 14 C 1.56580 * 104.17729 * 84.75637 * 13 12 11 15 15 C 1.56291 * 106.07064 * 6.57682 * 14 13 12 16 16 C 1.50513 * 101.75507 * 24.68152 * 15 14 13 17 17 H 1.08997 * 107.74502 * 66.76563 * 16 15 14 18 18 N 1.42703 * 128.17037 * 198.66984 * 16 15 14 19 19 C 1.36933 * 127.09986 * 331.69629 * 18 16 15 20 20 H 1.07995 * 120.00188 * 8.14285 * 19 18 16 21 21 C 1.38817 * 119.99832 * 188.14359 * 19 18 16 22 22 N 1.31621 * 119.99637 * 7.94878 * 21 19 18 23 23 Si 1.86798 * 120.00099 * 187.95550 * 21 19 18 24 24 H 1.48500 * 109.47284 * 94.78067 * 23 21 19 25 25 H 1.48494 * 109.47104 * 214.78168 * 23 21 19 26 26 H 1.48499 * 109.47013 * 334.77944 * 23 21 19 27 27 C 1.49298 * 105.79324 * 151.73402 * 18 16 15 28 28 C 1.52131 * 111.09319 * 298.98765 * 12 11 9 29 29 H 1.09002 * 109.47318 * 89.99448 * 1 2 3 30 30 H 1.09004 * 109.47006 * 210.00118 * 1 2 3 31 31 H 1.09004 * 109.46885 * 329.99461 * 1 2 3 32 32 H 1.07997 * 118.90069 * 179.97438 * 4 3 2 33 33 H 0.96708 * 114.00501 * 269.97525 * 7 6 5 34 34 H 0.97009 * 119.99633 * 0.02562 * 11 9 8 35 35 H 1.08999 * 110.41309 * 202.67716 * 13 12 11 36 36 H 1.09002 * 110.40446 * 325.11255 * 13 12 11 37 37 H 1.09000 * 109.73772 * 247.60870 * 14 13 12 38 38 H 1.09000 * 110.50901 * 125.95752 * 14 13 12 39 39 H 1.08992 * 110.97037 * 266.56228 * 15 14 13 40 40 H 1.08996 * 110.96867 * 142.79485 * 15 14 13 41 41 H 0.97010 * 119.99190 * 180.02562 * 22 21 19 42 42 H 1.08998 * 110.04845 * 232.07772 * 27 18 16 43 43 H 1.09001 * 110.04742 * 110.60035 * 27 18 16 44 44 H 1.08996 * 111.15128 * 43.91556 * 28 12 11 45 45 H 1.09008 * 111.14892 * 168.14024 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1392 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2115 0.0465 -0.0005 6 6 3.6233 -1.1435 -0.0006 7 8 4.3618 -2.2769 -0.0001 8 6 2.2166 -1.2042 -0.0005 9 6 1.5123 -2.5006 -0.0001 10 8 1.2215 -3.0348 -1.0529 11 7 1.1915 -3.0928 1.1673 12 6 0.4926 -4.3804 1.1677 13 6 1.4478 -5.5177 0.8827 14 6 2.0635 -5.8609 2.2809 15 6 1.2833 -4.9944 3.3216 16 6 -0.0206 -4.7581 2.6080 17 1 -0.5314 -5.7172 2.5232 18 7 -1.0001 -3.7540 2.8702 19 6 -1.2650 -3.1522 4.0713 20 1 -0.6191 -3.3298 4.9184 21 6 -2.3639 -2.3138 4.2001 22 7 -3.2375 -2.2188 3.2202 23 14 -2.6026 -1.3204 5.7639 24 1 -2.0288 0.0370 5.5806 25 1 -4.0528 -1.2085 6.0628 26 1 -1.9158 -1.9999 6.8917 27 6 -1.6770 -3.4959 1.5647 28 6 -0.8601 -4.2693 0.4806 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 4.0087 2.1048 -0.0009 33 1 4.5766 -2.6069 -0.8834 34 1 1.4233 -2.6665 2.0072 35 1 0.9067 -6.3803 0.4941 36 1 2.2164 -5.2008 0.1777 37 1 3.1214 -5.5988 2.2916 38 1 1.9370 -6.9203 2.5041 39 1 1.8002 -4.0538 3.5116 40 1 1.1263 -5.5457 4.2487 41 1 -4.0052 -1.6326 3.3102 42 1 -1.6714 -2.4282 1.3456 43 1 -2.7016 -3.8663 1.5954 44 1 -0.7866 -3.6932 -0.4417 45 1 -1.2884 -5.2542 0.2938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992129792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:51 Heat of formation + Delta-G solvation = 16.291029 kcal Electronic energy + Delta-G solvation = -30595.077137 eV Core-core repulsion = 26614.359976 eV Total energy + Delta-G solvation = -3980.717161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50363 -40.37579 -38.13921 -37.82389 -34.48930 -34.25997 -33.12406 -32.12162 -31.55172 -29.92970 -28.60571 -27.00172 -26.06945 -25.04279 -24.07050 -22.91600 -21.39980 -20.54573 -19.70257 -19.04960 -18.86946 -18.13162 -17.64204 -16.52758 -16.43182 -15.87308 -15.26298 -14.77658 -14.63591 -14.49590 -14.29637 -14.15959 -13.96629 -13.42141 -13.25471 -12.86024 -12.66053 -12.63338 -12.39255 -12.13705 -11.96533 -11.52487 -11.43954 -11.29072 -11.08308 -10.93592 -10.87880 -10.58280 -10.45283 -10.31082 -10.10871 -10.07389 -9.82845 -9.75222 -9.54537 -9.47048 -9.21561 -8.71844 -8.60175 -6.90578 -5.82809 -3.16483 0.48853 0.77405 2.67681 3.09955 3.30944 3.33634 3.40123 3.41681 3.58431 3.87983 4.13181 4.39725 4.54332 4.70762 4.87321 5.05596 5.16240 5.19864 5.26350 5.40870 5.55012 5.61950 5.65822 5.72895 5.76390 5.85184 5.89327 5.92105 6.07735 6.16113 6.23301 6.25507 6.30479 6.35122 6.44544 6.59582 6.68745 6.76751 6.82653 7.04687 7.11366 7.40093 7.54090 7.68810 7.83776 7.84491 8.12178 8.44354 9.06088 9.73210 10.42455 11.30654 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.005477 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.558307 B = 5111.380772 C = 6448.001577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.234 3.766 3 N -0.526 5.526 4 C 0.330 3.670 5 N -0.546 5.546 6 C 0.394 3.606 7 O -0.469 6.469 8 C -0.245 4.245 9 C 0.579 3.421 10 O -0.536 6.536 11 N -0.673 5.673 12 C 0.129 3.871 13 C -0.110 4.110 14 C -0.116 4.116 15 C -0.116 4.116 16 C 0.160 3.840 17 H 0.024 0.976 18 N -0.582 5.582 19 C -0.234 4.234 20 H 0.078 0.922 21 C -0.001 4.001 22 N -0.914 5.914 23 Si 0.906 3.094 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.180 3.820 28 C -0.142 4.142 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.204 0.796 33 H 0.411 0.589 34 H 0.402 0.598 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.253 0.747 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.949 0.126 -7.351 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.088 3.912 3 N -0.242 5.242 4 C 0.043 3.957 5 N -0.271 5.271 6 C 0.206 3.794 7 O -0.277 6.277 8 C -0.254 4.254 9 C 0.362 3.638 10 O -0.414 6.414 11 N -0.321 5.321 12 C 0.041 3.959 13 C -0.149 4.149 14 C -0.155 4.155 15 C -0.155 4.155 16 C 0.050 3.950 17 H 0.041 0.959 18 N -0.305 5.305 19 C -0.362 4.362 20 H 0.096 0.904 21 C -0.198 4.198 22 N -0.560 5.560 23 Si 0.736 3.264 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.056 3.944 28 C -0.181 4.181 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.220 0.780 33 H 0.272 0.728 34 H 0.238 0.762 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.966 0.691 -7.363 14.067 hybrid contribution -0.274 0.008 0.828 0.872 sum 11.693 0.699 -6.536 13.414 Atomic orbital electron populations 1.21007 0.86345 1.05830 1.04317 1.21939 0.98020 0.85865 0.85361 1.68317 1.10047 1.29616 1.16205 1.24929 0.86400 0.96012 0.88396 1.68016 1.42694 0.98694 1.17717 1.19354 0.85539 0.85865 0.88640 1.84631 1.72574 1.36061 1.34422 1.21912 0.94938 0.97422 1.11140 1.17422 0.78690 0.83050 0.84667 1.90772 1.54720 1.64707 1.31227 1.45679 1.56840 1.21950 1.07670 1.21654 0.90825 0.81872 1.01534 1.22034 0.98630 0.97482 0.96784 1.22961 0.99105 0.99399 0.94001 1.21850 0.96199 0.99509 0.97907 1.20803 0.90270 0.93292 0.90658 0.95899 1.43622 1.37718 1.43362 1.05806 1.18981 1.07794 1.21957 0.87420 0.90431 1.24779 0.96437 1.00800 0.97797 1.69934 1.13253 1.40879 1.31965 0.86202 0.77160 0.80332 0.82682 1.21647 1.21720 1.20625 1.21946 0.94337 0.97189 0.80902 1.22838 0.93980 1.01565 0.99733 0.88910 0.88696 0.88963 0.77950 0.72815 0.76208 0.91048 0.91486 0.92147 0.91820 0.91864 0.91577 0.93642 0.93827 0.93104 0.90503 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.85 36.01 0.35 -1.36 16 2 C 0.23 3.48 6.86 -81.85 -0.56 2.91 16 3 N -0.53 -7.26 10.36 -10.52 -0.11 -7.37 16 4 C 0.33 3.93 12.27 -92.09 -1.13 2.80 16 5 N -0.55 -7.24 10.45 -14.32 -0.15 -7.39 16 6 C 0.39 5.46 7.85 -16.19 -0.13 5.34 16 7 O -0.47 -5.68 13.10 -17.52 -0.23 -5.90 16 8 C -0.25 -3.70 5.67 -104.56 -0.59 -4.29 16 9 C 0.58 9.56 4.90 -12.47 -0.06 9.49 16 10 O -0.54 -9.92 15.22 5.29 0.08 -9.84 16 11 N -0.67 -11.28 4.48 -47.60 -0.21 -11.49 16 12 C 0.13 2.21 0.42 -130.70 -0.06 2.15 16 13 C -0.11 -1.63 6.24 -25.69 -0.16 -1.79 16 14 C -0.12 -1.57 6.95 -23.03 -0.16 -1.73 16 15 C -0.12 -1.86 6.46 -26.21 -0.17 -2.03 16 16 C 0.16 3.06 2.65 -68.72 -0.18 2.87 16 17 H 0.02 0.47 7.98 -51.93 -0.41 0.06 16 18 N -0.58 -13.45 3.16 -162.68 -0.51 -13.97 16 19 C -0.23 -6.00 10.26 -15.06 -0.15 -6.15 16 20 H 0.08 1.95 7.84 -52.49 -0.41 1.54 16 21 C 0.00 -0.02 5.45 -17.43 -0.10 -0.12 16 22 N -0.91 -25.35 10.80 55.49 0.60 -24.75 16 23 Si 0.91 21.19 29.56 -169.99 -5.03 16.17 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.18 4.07 5.28 -0.76 0.00 4.06 16 28 C -0.14 -2.67 6.10 -25.44 -0.16 -2.83 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.61 6.36 -51.93 -0.33 1.28 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.20 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.41 3.14 9.06 45.56 0.41 3.56 16 34 H 0.40 6.99 7.54 -40.82 -0.31 6.68 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.03 7.17 -51.93 -0.37 0.66 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.04 1.06 6.94 -51.93 -0.36 0.70 16 43 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 44 H 0.08 1.48 6.27 -51.93 -0.33 1.15 16 45 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -30.83 363.45 -8.76 -39.58 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.42 Total: 10.15 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -3.25 Total: 9.34 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.39 Total: -64.97 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.15 Total: -15.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.83 -8.76 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992129792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.874 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds