Wall clock time and date at job start Tue Mar 31 2020 17:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32209 * 120.51526 * 2 1 4 4 C 1.31903 * 121.14466 * 179.97438 * 3 2 1 5 5 N 1.31751 * 122.19883 * 0.02562 * 4 3 2 6 6 C 1.32744 * 120.86799 * 359.97438 * 5 4 3 7 7 O 1.35287 * 120.61603 * 179.72996 * 6 5 4 8 8 C 1.39775 * 120.50367 * 179.97438 * 2 1 3 9 9 C 1.47538 * 120.98214 * 0.04507 * 8 2 1 10 10 O 1.21591 * 119.99383 * 269.97715 * 9 8 2 11 11 N 1.34775 * 120.00170 * 89.97150 * 9 8 2 12 12 C 1.46497 * 119.99587 * 179.97438 * 11 9 8 13 13 C 1.51230 * 111.08122 * 281.64742 * 12 11 9 14 14 C 1.56590 * 104.17670 * 275.23345 * 13 12 11 15 15 C 1.56278 * 106.06955 * 353.42234 * 14 13 12 16 16 C 1.50516 * 101.75940 * 335.32315 * 15 14 13 17 17 H 1.08995 * 107.73869 * 293.23315 * 16 15 14 18 18 N 1.42695 * 128.18051 * 161.34017 * 16 15 14 19 19 C 1.36935 * 127.10687 * 28.24706 * 18 16 15 20 20 H 1.07994 * 120.00176 * 0.02584 * 19 18 16 21 21 C 1.38815 * 120.00177 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47122 * 89.99881 * 23 21 19 25 25 H 1.48496 * 109.47289 * 209.99760 * 23 21 19 26 26 H 1.48498 * 109.47506 * 330.00081 * 23 21 19 27 27 C 1.49295 * 105.79327 * 208.25130 * 18 16 15 28 28 C 1.52136 * 111.09792 * 61.02154 * 12 11 9 29 29 H 1.09002 * 109.47478 * 89.99337 * 1 2 3 30 30 H 1.08996 * 109.47671 * 210.00029 * 1 2 3 31 31 H 1.09004 * 109.46475 * 329.99455 * 1 2 3 32 32 H 1.08005 * 118.90411 * 180.02562 * 4 3 2 33 33 H 0.96692 * 114.00127 * 90.00137 * 7 6 5 34 34 H 0.96997 * 120.00138 * 0.02562 * 11 9 8 35 35 H 1.09002 * 110.40486 * 34.87906 * 13 12 11 36 36 H 1.09000 * 110.41422 * 157.31730 * 13 12 11 37 37 H 1.08999 * 110.44453 * 234.07716 * 14 13 12 38 38 H 1.08998 * 109.80023 * 112.42675 * 14 13 12 39 39 H 1.09003 * 110.97525 * 217.20762 * 15 14 13 40 40 H 1.09004 * 110.96876 * 93.43856 * 15 14 13 41 41 H 0.97006 * 120.00209 * 180.02562 * 22 21 19 42 42 H 1.09001 * 110.05208 * 249.39987 * 27 18 16 43 43 H 1.08999 * 110.10061 * 127.94442 * 27 18 16 44 44 H 1.09003 * 111.15363 * 191.86490 * 28 12 11 45 45 H 1.09002 * 111.14588 * 316.04616 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4972 1.1535 0.0005 5 7 4.2115 0.0464 0.0005 6 6 3.6233 -1.1436 0.0006 7 8 4.3617 -2.2772 -0.0049 8 6 2.2165 -1.2043 0.0005 9 6 1.5122 -2.5007 0.0001 10 8 1.2216 -3.0350 1.0530 11 7 1.1907 -3.0926 -1.1672 12 6 0.4919 -4.3802 -1.1675 13 6 1.4470 -5.5176 -0.8828 14 6 2.0620 -5.8611 -2.2814 15 6 1.2816 -4.9945 -3.3217 16 6 -0.0220 -4.7579 -2.6075 17 1 -0.5329 -5.7169 -2.5224 18 7 -1.0016 -3.7539 -2.8693 19 6 -1.2666 -3.1514 -4.0701 20 1 -0.7033 -3.4280 -4.9490 21 6 -2.2594 -2.1851 -4.1577 22 7 -2.9457 -1.8477 -3.0866 23 14 -2.6214 -1.3638 -5.7959 24 1 -3.6594 -2.1405 -6.5204 25 1 -3.1120 0.0176 -5.5594 26 1 -1.3807 -1.3158 -6.6105 27 6 -1.6779 -3.4958 -1.5636 28 6 -0.8606 -4.2693 -0.4798 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5140 32 1 4.0089 2.1046 0.0009 33 1 4.5800 -2.6086 0.8768 34 1 1.4228 -2.6666 -2.0071 35 1 2.2159 -5.2008 -0.1782 36 1 0.9059 -6.3802 -0.4940 37 1 1.9342 -6.9204 -2.5037 38 1 3.1202 -5.6001 -2.2935 39 1 1.1240 -5.5458 -4.2488 40 1 1.7985 -4.0539 -3.5120 41 1 -3.6397 -1.1727 -3.1479 42 1 -2.7026 -3.8662 -1.5938 43 1 -1.6732 -2.4282 -1.3438 44 1 -1.2888 -5.2542 -0.2929 45 1 -0.7866 -3.6938 0.4430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992129802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:54 Heat of formation + Delta-G solvation = 16.789774 kcal Electronic energy + Delta-G solvation = -30642.711637 eV Core-core repulsion = 26662.016103 eV Total energy + Delta-G solvation = -3980.695534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46742 -40.35215 -38.11443 -37.79919 -34.48780 -34.21352 -33.09300 -32.09587 -31.53162 -29.92198 -28.55314 -26.99706 -26.03274 -25.01844 -24.07261 -22.87630 -21.36636 -20.52511 -19.69676 -19.02202 -18.84431 -18.09351 -17.60790 -16.53801 -16.40137 -15.85460 -15.23412 -14.72069 -14.61186 -14.46533 -14.27357 -14.16870 -13.95052 -13.39913 -13.23575 -12.75713 -12.65266 -12.58061 -12.37500 -12.10149 -11.95563 -11.50998 -11.41649 -11.26800 -11.05513 -10.98546 -10.86764 -10.56348 -10.40973 -10.32626 -10.07966 -10.05657 -9.78169 -9.73905 -9.50026 -9.44932 -9.20198 -8.72588 -8.57881 -6.92620 -5.80916 -3.15395 0.52332 0.81502 2.70970 3.13334 3.33684 3.34962 3.39876 3.41143 3.61367 3.91569 4.16839 4.39647 4.55704 4.73913 4.91380 5.07887 5.16742 5.21671 5.30207 5.42084 5.54487 5.66759 5.75101 5.76221 5.76815 5.88120 5.92222 5.95132 6.08742 6.18758 6.24360 6.30657 6.31404 6.36285 6.45092 6.61296 6.72050 6.77473 6.83880 7.07471 7.13917 7.45501 7.53638 7.70805 7.87388 7.87910 8.12966 8.47867 9.07347 9.73516 10.42119 11.31000 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.005556 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.318033 B = 5038.495117 C = 6396.500764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.235 3.765 3 N -0.526 5.526 4 C 0.330 3.670 5 N -0.547 5.547 6 C 0.393 3.607 7 O -0.469 6.469 8 C -0.245 4.245 9 C 0.580 3.420 10 O -0.539 6.539 11 N -0.670 5.670 12 C 0.129 3.871 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.116 4.116 16 C 0.160 3.840 17 H 0.024 0.976 18 N -0.583 5.583 19 C -0.231 4.231 20 H 0.078 0.922 21 C -0.002 4.002 22 N -0.917 5.917 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.178 3.822 28 C -0.143 4.143 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.204 0.796 33 H 0.411 0.589 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.253 0.747 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.346 -0.504 6.960 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.089 3.911 3 N -0.242 5.242 4 C 0.042 3.958 5 N -0.272 5.272 6 C 0.205 3.795 7 O -0.277 6.277 8 C -0.254 4.254 9 C 0.363 3.637 10 O -0.417 6.417 11 N -0.319 5.319 12 C 0.042 3.958 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.155 4.155 16 C 0.050 3.950 17 H 0.041 0.959 18 N -0.306 5.306 19 C -0.359 4.359 20 H 0.096 0.904 21 C -0.199 4.199 22 N -0.564 5.564 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.055 3.945 28 C -0.182 4.182 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.220 0.780 33 H 0.271 0.729 34 H 0.238 0.762 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.384 0.096 6.982 13.355 hybrid contribution -0.341 -0.134 -0.894 0.966 sum 11.043 -0.037 6.088 12.610 Atomic orbital electron populations 1.20985 0.86170 1.04583 1.05590 1.21966 0.98096 0.85830 0.85161 1.68309 1.10018 1.29633 1.16277 1.24920 0.86422 0.95994 0.88429 1.68010 1.42695 0.98693 1.17808 1.19359 0.85561 0.85860 0.88697 1.84635 1.72563 1.36062 1.34431 1.21905 0.94897 0.97451 1.11170 1.17412 0.78650 0.83018 0.84648 1.90771 1.54944 1.64725 1.31235 1.45643 1.56677 1.21886 1.07683 1.21643 0.90819 0.81903 1.01483 1.22041 0.98657 0.97500 0.96766 1.22962 0.99124 0.99362 0.94021 1.21858 0.96243 0.99529 0.97853 1.20818 0.90138 0.93322 0.90754 0.95930 1.43651 1.37234 1.43617 1.06116 1.18993 1.15609 1.15705 0.85555 0.90401 1.24759 0.98500 0.99418 0.97236 1.69905 1.25289 1.34509 1.26676 0.86204 0.78093 0.78798 0.83149 1.21601 1.21675 1.20775 1.22019 0.93157 0.98526 0.80821 1.22851 0.94079 1.01405 0.99854 0.87602 0.89475 0.89366 0.77986 0.72869 0.76205 0.91490 0.91085 0.91856 0.92139 0.91639 0.91809 0.93659 0.94685 0.91642 0.91592 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.85 36.00 0.35 -1.39 16 2 C 0.23 3.57 6.86 -81.86 -0.56 3.01 16 3 N -0.53 -7.42 10.36 -10.52 -0.11 -7.53 16 4 C 0.33 4.01 12.27 -92.10 -1.13 2.88 16 5 N -0.55 -7.39 10.45 -14.32 -0.15 -7.54 16 6 C 0.39 5.56 7.85 -16.19 -0.13 5.43 16 7 O -0.47 -5.78 13.10 -17.55 -0.23 -6.01 16 8 C -0.25 -3.77 5.67 -104.56 -0.59 -4.37 16 9 C 0.58 9.73 4.90 -12.47 -0.06 9.67 16 10 O -0.54 -10.09 15.22 5.29 0.08 -10.01 16 11 N -0.67 -11.43 4.48 -47.60 -0.21 -11.64 16 12 C 0.13 2.23 0.42 -130.70 -0.06 2.18 16 13 C -0.11 -1.64 6.24 -25.69 -0.16 -1.80 16 14 C -0.12 -1.57 6.95 -23.04 -0.16 -1.74 16 15 C -0.12 -1.87 6.46 -26.21 -0.17 -2.04 16 16 C 0.16 3.06 2.65 -68.72 -0.18 2.87 16 17 H 0.02 0.46 7.98 -51.93 -0.41 0.05 16 18 N -0.58 -13.46 3.16 -162.69 -0.51 -13.97 16 19 C -0.23 -5.89 10.29 -15.06 -0.15 -6.05 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 22 N -0.92 -25.02 10.55 55.49 0.59 -24.43 16 23 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.18 4.04 5.33 -0.76 0.00 4.04 16 28 C -0.14 -2.70 6.10 -25.44 -0.16 -2.86 16 29 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.09 1.39 7.18 -51.93 -0.37 1.02 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.20 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.41 3.23 9.06 45.56 0.41 3.64 16 34 H 0.40 7.15 7.54 -40.82 -0.31 6.84 16 35 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.05 7.17 -51.93 -0.37 0.68 16 41 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.03 0.88 7.99 -51.93 -0.41 0.46 16 43 H 0.07 1.62 7.05 -51.93 -0.37 1.25 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.49 6.27 -51.93 -0.33 1.16 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -30.39 364.68 -8.82 -39.21 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.49 Total: 10.66 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -3.26 Total: 9.68 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.40 Total: -65.11 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.15 Total: -16.02 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.39 -8.82 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992129802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.004 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds