Wall clock time and date at job start Tue Mar 31 2020 16:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38493 * 120.82085 * 2 1 4 4 C 1.39268 * 119.19272 * 179.77940 * 3 2 1 5 5 C 1.48330 * 119.56715 * 180.25271 * 4 3 2 6 6 O 1.21488 * 120.00255 * 0.25602 * 5 4 3 7 7 N 1.34777 * 119.99499 * 180.25289 * 5 4 3 8 8 C 1.46505 * 119.99984 * 180.02562 * 7 5 4 9 9 C 1.53037 * 109.45838 * 275.06661 * 8 7 5 10 10 C 1.53186 * 109.31681 * 178.61356 * 9 8 7 11 11 N 1.46927 * 108.77524 * 54.63359 * 10 9 8 12 12 C 1.36932 * 120.63034 * 126.41636 * 11 10 9 13 13 H 1.07996 * 120.00586 * 332.61787 * 12 11 10 14 14 C 1.38813 * 119.99913 * 152.61991 * 12 11 10 15 15 N 1.31620 * 120.00391 * 344.87361 * 14 12 11 16 16 Si 1.86800 * 120.00196 * 164.87223 * 14 12 11 17 17 H 1.48501 * 109.47064 * 59.99975 * 16 14 12 18 18 H 1.48501 * 109.47639 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47317 * 300.00318 * 16 14 12 20 20 C 1.46928 * 118.73667 * 306.39604 * 11 10 9 21 21 C 1.53034 * 109.46082 * 154.99671 * 8 7 5 22 22 N 1.32742 * 120.85416 * 0.50621 * 4 3 2 23 23 C 1.31380 * 121.80548 * 359.74883 * 22 4 3 24 24 C 1.39767 * 120.72119 * 359.97438 * 23 22 4 25 25 C 1.47998 * 120.46995 * 180.02562 * 24 23 22 26 26 N 1.34777 * 119.99595 * 354.13831 * 25 24 23 27 27 O 1.21528 * 120.00335 * 174.14021 * 25 24 23 28 28 H 1.09002 * 109.46943 * 263.31216 * 1 2 3 29 29 H 1.09009 * 109.46760 * 143.31854 * 1 2 3 30 30 H 1.08996 * 109.47498 * 23.32278 * 1 2 3 31 31 H 1.07997 * 120.40275 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00545 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.46060 * 35.02302 * 8 7 5 34 34 H 1.08999 * 109.49797 * 298.56497 * 9 8 7 35 35 H 1.09004 * 109.50030 * 58.65703 * 9 8 7 36 36 H 1.09005 * 109.58665 * 294.84880 * 10 9 8 37 37 H 1.08996 * 109.71013 * 174.49317 * 10 9 8 38 38 H 0.96995 * 120.00871 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.58597 * 293.81410 * 20 11 10 40 40 H 1.09003 * 109.70122 * 173.46636 * 20 11 10 41 41 H 1.08998 * 109.50356 * 301.33463 * 21 8 7 42 42 H 1.09004 * 109.49740 * 61.43663 * 21 8 7 43 43 H 1.08007 * 119.64091 * 179.97438 * 23 22 4 44 44 H 0.96998 * 120.00652 * 359.97438 * 26 25 24 45 45 H 0.97003 * 119.99698 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1893 0.0000 4 6 3.6087 1.1498 0.0047 5 6 4.3769 2.4186 0.0104 6 8 3.7916 3.4832 0.0157 7 7 5.7244 2.3904 0.0098 8 6 6.4833 3.6435 0.0160 9 6 6.6379 4.1530 -1.4187 10 6 7.4017 5.4808 -1.4054 11 7 8.6724 5.2883 -0.6932 12 6 9.8603 5.6340 -1.2800 13 1 9.9540 5.6254 -2.3559 14 6 10.9444 5.9954 -0.4919 15 7 10.7648 6.2955 0.7769 16 14 12.6584 6.0557 -1.2322 17 1 12.6820 7.0369 -2.3466 18 1 13.6335 6.4671 -0.1904 19 1 13.0223 4.7117 -1.7484 20 6 8.6440 4.7184 0.6607 21 6 7.8662 3.3991 0.6242 22 7 4.2568 -0.0086 -0.0010 23 6 3.6205 -1.1581 -0.0062 24 6 2.2235 -1.2008 -0.0055 25 6 1.5124 -2.4988 -0.0109 26 7 2.2070 -3.6471 -0.1357 27 8 0.3024 -2.5292 0.0972 28 1 -0.3633 -0.1197 1.0207 29 1 -0.3633 -0.8242 -0.6140 30 1 -0.3634 0.9436 -0.4068 31 1 1.6967 2.1359 -0.0004 32 1 6.1918 1.5404 0.0060 33 1 5.9517 4.3871 0.6099 34 1 7.1912 3.4210 -2.0071 35 1 5.6524 4.3046 -1.8592 36 1 6.8078 6.2389 -0.8947 37 1 7.6009 5.8006 -2.4282 38 1 11.5223 6.5477 1.3277 39 1 8.1515 5.4143 1.3399 40 1 9.6622 4.5330 1.0028 41 1 7.7551 3.0141 1.6379 42 1 8.4079 2.6742 0.0165 43 1 4.1831 -2.0800 -0.0111 44 1 3.1728 -3.6229 -0.2224 45 1 1.7409 -4.4978 -0.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003663566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:13 Heat of formation + Delta-G solvation = -18.762289 kcal Electronic energy + Delta-G solvation = -27784.923829 eV Core-core repulsion = 23802.686642 eV Total energy + Delta-G solvation = -3982.237187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33839 -39.89580 -38.86804 -37.29971 -34.86375 -34.49222 -34.02077 -32.22796 -31.64781 -30.12906 -29.37957 -28.34348 -25.99872 -24.67721 -23.30545 -22.35544 -22.12452 -21.47441 -20.24061 -19.38206 -18.43827 -18.03302 -17.54340 -16.64803 -16.58334 -15.71566 -15.61022 -15.50044 -15.02876 -14.89301 -14.70872 -14.11296 -13.93612 -13.70621 -13.52412 -13.22341 -13.16678 -13.05958 -12.92449 -12.61628 -12.58017 -12.36481 -11.48832 -11.10393 -10.91364 -10.71989 -10.64965 -10.51919 -10.33798 -10.29601 -10.25053 -10.03974 -9.96938 -9.84994 -9.72846 -9.67990 -9.51277 -8.75373 -8.45994 -6.69517 -5.78821 -3.21837 -0.12665 0.72868 2.09449 2.80090 2.87756 3.07741 3.38436 3.43957 3.44996 3.54571 3.70613 4.12903 4.23437 4.39218 4.49208 4.51678 4.78628 5.04152 5.27300 5.29391 5.34091 5.37276 5.43101 5.50101 5.56950 5.67369 5.86037 5.88686 6.05299 6.07593 6.22966 6.24920 6.31999 6.53096 6.53818 6.58507 6.71613 6.78265 6.85897 6.98292 7.19270 7.33489 7.61447 7.66406 7.70354 7.78837 8.22983 8.44678 9.20948 9.83830 10.40130 11.29703 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.002137 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.156604 B =13097.565388 C =13645.038235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.017 3.983 3 C -0.124 4.124 4 C 0.116 3.884 5 C 0.562 3.438 6 O -0.529 6.529 7 N -0.698 5.698 8 C 0.148 3.852 9 C -0.139 4.139 10 C 0.148 3.852 11 N -0.593 5.593 12 C -0.250 4.250 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.906 5.906 16 Si 0.905 3.095 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.173 3.827 21 C -0.146 4.146 22 N -0.466 5.466 23 C 0.139 3.861 24 C -0.188 4.188 25 C 0.570 3.430 26 N -0.849 5.849 27 O -0.529 6.529 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.407 0.593 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.255 0.745 39 H 0.020 0.980 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.165 0.835 44 H 0.402 0.598 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.854 -19.808 -0.605 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 C -0.145 4.145 4 C -0.022 4.022 5 C 0.345 3.655 6 O -0.406 6.406 7 N -0.347 5.347 8 C 0.045 3.955 9 C -0.179 4.179 10 C 0.021 3.979 11 N -0.316 5.316 12 C -0.380 4.380 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.551 5.551 16 Si 0.735 3.265 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.046 3.954 21 C -0.186 4.186 22 N -0.177 5.177 23 C -0.022 4.022 24 C -0.194 4.194 25 C 0.356 3.644 26 N -0.413 5.413 27 O -0.406 6.406 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.242 0.758 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.182 0.818 44 H 0.232 0.768 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -16.959 -18.713 -0.403 25.258 hybrid contribution 0.658 -0.875 -0.348 1.149 sum -16.302 -19.589 -0.751 25.496 Atomic orbital electron populations 1.21128 0.88467 1.04024 1.04329 1.20521 0.97861 0.90841 0.89909 1.22118 0.93779 0.99660 0.98926 1.21592 0.91851 0.92556 0.96158 1.17874 0.82930 0.86957 0.77739 1.90799 1.69704 1.29919 1.50144 1.46242 1.05328 1.11295 1.71860 1.21174 0.92174 0.84373 0.97775 1.22384 0.99813 1.00243 0.95504 1.20871 0.87750 0.92618 0.96688 1.44098 1.01072 1.71563 1.14869 1.19166 0.88090 1.39372 0.91358 0.91637 1.25052 0.99068 0.99282 0.96396 1.69981 1.29870 1.48893 1.06309 0.86333 0.84189 0.77929 0.78086 1.20907 1.21639 1.21066 1.20806 1.00123 0.88221 0.86238 1.22550 0.94273 1.02674 0.99136 1.67580 1.40543 0.97726 1.11872 1.22898 0.90135 0.96333 0.92859 1.20923 0.95258 0.94276 1.08902 1.18017 0.86750 0.83931 0.75720 1.43747 1.11852 1.08614 1.77081 1.90793 1.13572 1.87111 1.49163 0.89658 0.88258 0.91189 0.82492 0.75764 0.89792 0.92184 0.92696 0.96121 0.92495 0.93529 0.96144 0.88495 0.92639 0.92040 0.81845 0.76828 0.76051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.83 36.01 0.32 -0.70 16 2 C 0.02 0.16 5.95 -103.93 -0.62 -0.46 16 3 C -0.12 -1.34 9.30 -39.10 -0.36 -1.71 16 4 C 0.12 1.42 6.75 -82.94 -0.56 0.86 16 5 C 0.56 8.50 7.78 -12.11 -0.09 8.40 16 6 O -0.53 -9.51 15.97 5.38 0.09 -9.43 16 7 N -0.70 -10.32 5.07 -54.56 -0.28 -10.59 16 8 C 0.15 2.58 2.41 -67.89 -0.16 2.42 16 9 C -0.14 -2.54 5.65 -26.62 -0.15 -2.69 16 10 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 11 N -0.59 -14.74 3.00 -172.32 -0.52 -15.26 16 12 C -0.25 -6.79 9.60 -15.06 -0.14 -6.94 16 13 H 0.07 1.74 7.87 -52.49 -0.41 1.33 16 14 C 0.00 0.00 4.98 -17.43 -0.09 -0.08 16 15 N -0.91 -25.94 11.02 55.49 0.61 -25.33 16 16 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 21 C -0.15 -2.69 5.55 -26.61 -0.15 -2.83 16 22 N -0.47 -4.94 9.52 -9.48 -0.09 -5.03 16 23 C 0.14 1.07 10.69 -17.17 -0.18 0.89 16 24 C -0.19 -1.58 5.90 -104.73 -0.62 -2.20 16 25 C 0.57 4.45 8.00 -12.26 -0.10 4.36 16 26 N -0.85 -3.12 8.83 30.56 0.27 -2.85 16 27 O -0.53 -5.73 14.32 5.34 0.08 -5.66 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.91 5.95 -51.92 -0.31 0.60 16 30 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 31 H 0.16 1.64 7.63 -52.49 -0.40 1.24 16 32 H 0.41 5.31 7.93 -40.82 -0.32 4.98 16 33 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 2.52 5.94 -51.93 -0.31 2.21 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.16 0.58 6.46 -52.48 -0.34 0.24 16 44 H 0.40 0.44 6.92 -40.82 -0.28 0.16 16 45 H 0.41 1.00 8.93 -40.82 -0.36 0.63 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -33.43 368.33 -8.33 -41.76 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.06 Total: 3.93 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -2.95 Total: 6.47 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.00 Total: -59.06 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.16 Total: -15.08 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.43 -8.33 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003663566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.994 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds