Wall clock time and date at job start Tue Mar 31 2020 17:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32218 * 120.50986 * 2 1 4 4 C 1.31912 * 121.14405 * 180.26465 * 3 2 1 5 5 N 1.31752 * 122.19360 * 359.72121 * 4 3 2 6 6 C 1.32745 * 120.87179 * 0.02562 * 5 4 3 7 7 O 1.35284 * 120.61894 * 180.02562 * 6 5 4 8 8 C 1.39767 * 120.51241 * 179.73098 * 2 1 3 9 9 C 1.47536 * 120.97450 * 0.02928 * 8 2 1 10 10 O 1.21587 * 119.99864 * 269.71005 * 9 8 2 11 11 N 1.34773 * 120.00139 * 89.72201 * 9 8 2 12 12 C 1.47215 * 126.70378 * 359.96467 * 11 9 8 13 13 C 1.53773 * 106.38061 * 148.76066 * 12 11 9 14 14 H 1.09004 * 111.70799 * 256.37767 * 13 12 11 15 15 C 1.54318 * 109.06174 * 132.43044 * 13 12 11 16 16 C 1.55061 * 103.93850 * 222.03466 * 15 13 12 17 17 C 1.55049 * 102.10879 * 40.05325 * 16 15 13 18 18 H 1.09002 * 110.53554 * 78.70380 * 17 16 15 19 19 N 1.46499 * 110.53624 * 201.33419 * 17 16 15 20 20 C 1.36939 * 119.99547 * 273.54938 * 19 17 16 21 21 H 1.07993 * 120.00716 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99459 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99635 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99668 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99848 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99841 * 24 22 20 28 28 C 1.54325 * 103.93803 * 319.94817 * 17 16 15 29 29 H 1.09003 * 111.68602 * 262.78961 * 28 17 16 30 30 C 1.47216 * 126.70380 * 180.02562 * 11 9 8 31 31 H 1.08992 * 109.47319 * 270.26670 * 1 2 3 32 32 H 1.09006 * 109.47232 * 30.26763 * 1 2 3 33 33 H 1.09006 * 109.46851 * 150.26034 * 1 2 3 34 34 H 1.07996 * 118.90350 * 179.74970 * 4 3 2 35 35 H 0.96699 * 113.99911 * 269.98127 * 7 6 5 36 36 H 1.09003 * 110.06824 * 29.53247 * 12 11 9 37 37 H 1.08997 * 110.12215 * 268.02346 * 12 11 9 38 38 H 1.09001 * 110.53873 * 103.42076 * 15 13 12 39 39 H 1.09002 * 110.53672 * 340.64688 * 15 13 12 40 40 H 1.08999 * 110.89694 * 281.85578 * 16 15 13 41 41 H 1.08997 * 110.93342 * 158.27232 * 16 15 13 42 42 H 0.96998 * 120.00185 * 93.54321 * 19 17 16 43 43 H 0.96993 * 120.00007 * 0.02562 * 23 22 20 44 44 H 1.09005 * 110.07324 * 330.47088 * 30 11 9 45 45 H 1.09000 * 110.07179 * 92.00850 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1537 -0.0052 5 7 4.2115 0.0466 -0.0052 6 6 3.6234 -1.1434 -0.0004 7 8 4.3618 -2.2770 0.0001 8 6 2.2166 -1.2041 0.0057 9 6 1.5123 -2.5005 0.0111 10 8 1.2264 -3.0325 1.0663 11 7 1.1862 -3.0951 -1.1536 12 6 1.4583 -2.5861 -2.5078 13 6 1.6564 -3.8203 -3.4034 14 1 2.7093 -3.9906 -3.6282 15 6 0.8191 -3.6502 -4.6885 16 6 0.1973 -5.0521 -4.9175 17 6 -0.1730 -5.4832 -3.4749 18 1 -1.0958 -4.9985 -3.1560 19 7 -0.3041 -6.9399 -3.3915 20 6 -1.4985 -7.5382 -3.6927 21 1 -2.3439 -6.9363 -3.9913 22 6 -1.6225 -8.9186 -3.6143 23 7 -0.5920 -9.6524 -3.2508 24 14 -3.2519 -9.7347 -4.0244 25 1 -4.0767 -9.8396 -2.7939 26 1 -3.0018 -11.0931 -4.5699 27 1 -3.9728 -8.9204 -5.0355 28 6 1.0193 -4.9974 -2.6241 29 1 1.7368 -5.7975 -2.4421 30 6 0.4871 -4.3800 -1.3200 31 1 -0.3633 0.0048 1.0276 32 1 -0.3634 0.8876 -0.5180 33 1 -0.3633 -0.8924 -0.5098 34 1 4.0087 2.1049 -0.0091 35 1 4.5734 -2.6089 -0.8832 36 1 2.3626 -1.9776 -2.5040 37 1 0.6130 -1.9972 -2.8639 38 1 1.4579 -3.3736 -5.5273 39 1 0.0376 -2.9050 -4.5398 40 1 0.9273 -5.7349 -5.3521 41 1 -0.6921 -4.9860 -5.5441 42 1 0.4551 -7.4806 -3.1231 43 1 0.2540 -9.2285 -3.0375 44 1 0.7063 -5.0369 -0.4782 45 1 -0.5875 -4.2141 -1.3958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026338934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:29 Heat of formation + Delta-G solvation = -7.628599 kcal Electronic energy + Delta-G solvation = -29084.477640 eV Core-core repulsion = 25102.723246 eV Total energy + Delta-G solvation = -3981.754394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86160 -40.35209 -38.58840 -38.17132 -35.47913 -34.64278 -33.73001 -32.42512 -31.12579 -29.81193 -28.93534 -28.49881 -25.81897 -24.91058 -23.63734 -23.25940 -22.95754 -20.64984 -19.81242 -19.38332 -19.34414 -18.53609 -17.78231 -17.27425 -16.78499 -16.26886 -15.95525 -15.41642 -15.03684 -14.67007 -14.55892 -14.27022 -13.85774 -13.74206 -13.65591 -13.31776 -13.29274 -13.10448 -12.79189 -12.72153 -12.47613 -12.22229 -11.73564 -11.67755 -11.28716 -11.05423 -10.81556 -10.77679 -10.59910 -10.55607 -10.48478 -10.27327 -10.16739 -10.03518 -9.91425 -9.77479 -9.21625 -8.93671 -8.89904 -7.08395 -6.14631 -3.15465 0.14080 0.42157 2.19361 2.64334 2.82061 3.11697 3.48920 3.49244 3.53657 3.67440 3.76598 4.01484 4.33372 4.46567 4.55785 4.61586 4.64960 4.69864 4.84539 5.02911 5.10095 5.18968 5.20704 5.21543 5.38807 5.44528 5.54095 5.56816 5.64094 5.74402 5.75612 5.77204 5.85130 5.98532 6.03807 6.12236 6.18580 6.32836 6.34376 6.44610 6.63770 6.84546 6.86294 7.25993 7.50728 7.76555 7.83390 8.70897 9.16762 10.03078 10.17016 11.33618 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.002787 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.069125 B =10042.785233 C =10148.607447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.228 3.772 3 N -0.524 5.524 4 C 0.334 3.666 5 N -0.541 5.541 6 C 0.398 3.602 7 O -0.465 6.465 8 C -0.242 4.242 9 C 0.592 3.408 10 O -0.518 6.518 11 N -0.609 5.609 12 C 0.106 3.894 13 C -0.099 4.099 14 H 0.087 0.913 15 C -0.117 4.117 16 C -0.142 4.142 17 C 0.190 3.810 18 H 0.057 0.943 19 N -0.732 5.732 20 C -0.333 4.333 21 H 0.065 0.935 22 C -0.043 4.043 23 N -0.943 5.943 24 Si 1.081 2.919 25 H -0.295 1.295 26 H -0.288 1.288 27 H -0.295 1.295 28 C -0.105 4.105 29 H 0.089 0.911 30 C 0.116 3.884 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.207 0.793 35 H 0.412 0.588 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.367 0.633 43 H 0.255 0.745 44 H 0.082 0.918 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 22.814 0.742 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.082 3.918 3 N -0.241 5.241 4 C 0.047 3.953 5 N -0.266 5.266 6 C 0.210 3.790 7 O -0.273 6.273 8 C -0.251 4.251 9 C 0.377 3.623 10 O -0.393 6.393 11 N -0.342 5.342 12 C -0.017 4.017 13 C -0.118 4.118 14 H 0.105 0.895 15 C -0.155 4.155 16 C -0.183 4.183 17 C 0.079 3.921 18 H 0.075 0.925 19 N -0.373 5.373 20 C -0.464 4.464 21 H 0.083 0.917 22 C -0.241 4.241 23 N -0.588 5.588 24 Si 0.912 3.088 25 H -0.223 1.223 26 H -0.214 1.214 27 H -0.222 1.222 28 C -0.126 4.126 29 H 0.108 0.892 30 C -0.006 4.006 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.224 0.776 35 H 0.272 0.728 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.201 0.799 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.582 22.011 1.839 23.048 hybrid contribution 0.962 0.518 -0.313 1.137 sum 7.544 22.530 1.526 23.808 Atomic orbital electron populations 1.20937 0.86820 1.04683 1.04774 1.21822 0.97814 0.85894 0.86293 1.68315 1.10204 1.29244 1.16297 1.25004 0.86241 0.96139 0.87925 1.68074 1.42566 0.98618 1.17324 1.19370 0.85467 0.86011 0.88120 1.84705 1.72491 1.35849 1.34293 1.21699 0.95135 0.96699 1.11598 1.17130 0.78797 0.83352 0.82986 1.90864 1.53904 1.64362 1.30136 1.48624 1.57640 1.22921 1.05040 1.22337 1.00742 0.96871 0.81777 1.22564 1.00366 0.93557 0.95327 0.89499 1.22510 0.98381 0.98928 0.95694 1.23281 1.00215 0.94207 1.00551 1.21171 0.93682 0.85923 0.91312 0.92466 1.42446 1.12288 1.00261 1.82347 1.20035 0.89991 0.92850 1.43476 0.91716 1.25755 1.05126 0.92771 1.00465 1.70855 1.02171 1.37098 1.48661 0.83218 0.73882 0.75791 0.75910 1.22280 1.21401 1.22157 1.22894 0.98985 0.96786 0.93895 0.89220 1.22254 0.96443 0.83196 0.98676 0.88548 0.88792 0.89871 0.77634 0.72756 0.91983 0.90653 0.92026 0.91563 0.91632 0.91964 0.79929 0.93325 0.89978 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.85 36.00 0.35 -0.60 16 2 C 0.23 2.36 6.86 -81.86 -0.56 1.80 16 3 N -0.52 -5.10 10.36 -10.52 -0.11 -5.20 16 4 C 0.33 2.87 12.27 -92.09 -1.13 1.74 16 5 N -0.54 -5.73 10.45 -14.32 -0.15 -5.88 16 6 C 0.40 4.55 7.85 -16.19 -0.13 4.43 16 7 O -0.47 -5.03 13.10 -17.55 -0.23 -5.26 16 8 C -0.24 -2.86 4.53 -104.56 -0.47 -3.33 16 9 C 0.59 8.25 5.57 -12.47 -0.07 8.18 16 10 O -0.52 -9.40 17.34 5.29 0.09 -9.31 16 11 N -0.61 -7.49 3.32 -172.80 -0.57 -8.06 16 12 C 0.11 1.01 6.37 -3.25 -0.02 0.99 16 13 C -0.10 -1.06 3.91 -88.54 -0.35 -1.40 16 14 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.12 -1.29 6.35 -24.95 -0.16 -1.45 16 16 C -0.14 -2.21 6.60 -24.56 -0.16 -2.37 16 17 C 0.19 3.36 3.01 -66.15 -0.20 3.16 16 18 H 0.06 1.06 7.17 -51.93 -0.37 0.68 16 19 N -0.73 -17.06 5.23 -51.71 -0.27 -17.33 16 20 C -0.33 -8.92 9.97 -15.06 -0.15 -9.07 16 21 H 0.06 1.72 7.83 -52.49 -0.41 1.30 16 22 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 23 N -0.94 -28.50 13.70 55.49 0.76 -27.74 16 24 Si 1.08 25.44 29.92 -169.99 -5.09 20.35 16 25 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 28 C -0.11 -1.50 3.60 -88.53 -0.32 -1.82 16 29 H 0.09 1.38 7.78 -51.93 -0.40 0.97 16 30 C 0.12 1.67 6.54 -3.24 -0.02 1.65 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.73 7.18 -51.93 -0.37 0.36 16 34 H 0.21 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.41 2.44 9.06 45.56 0.41 2.85 16 36 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 37 H 0.08 0.66 7.13 -51.93 -0.37 0.29 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 7.19 -51.93 -0.37 0.30 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.37 8.92 6.40 -40.82 -0.26 8.66 16 43 H 0.26 7.57 6.77 -40.82 -0.28 7.29 16 44 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 45 H 0.08 1.13 7.13 -51.93 -0.37 0.76 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -35.02 369.49 -8.83 -43.85 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.35 Total: 8.44 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -3.48 Total: 0.57 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.34 Total: -64.21 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.14 Total: -14.57 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.09 Total: 20.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.02 -8.83 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026338934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.223 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds