Wall clock time and date at job start Tue Mar 31 2020 17:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32218 * 120.50986 * 2 1 4 4 C 1.31912 * 121.14405 * 180.26465 * 3 2 1 5 5 N 1.31752 * 122.19360 * 359.72121 * 4 3 2 6 6 C 1.32745 * 120.87179 * 0.02562 * 5 4 3 7 7 O 1.35284 * 120.61894 * 180.02562 * 6 5 4 8 8 C 1.39767 * 120.51241 * 179.73098 * 2 1 3 9 9 C 1.47536 * 120.97450 * 0.02928 * 8 2 1 10 10 O 1.21587 * 119.99864 * 269.71005 * 9 8 2 11 11 N 1.34773 * 120.00139 * 89.72201 * 9 8 2 12 12 C 1.47215 * 126.70378 * 359.96467 * 11 9 8 13 13 C 1.53773 * 106.38061 * 148.76066 * 12 11 9 14 14 H 1.09004 * 111.70799 * 256.37767 * 13 12 11 15 15 C 1.54318 * 109.06174 * 132.43044 * 13 12 11 16 16 C 1.55061 * 103.93850 * 222.03466 * 15 13 12 17 17 C 1.55049 * 102.10879 * 40.05325 * 16 15 13 18 18 H 1.09002 * 110.53554 * 78.70380 * 17 16 15 19 19 N 1.46499 * 110.53624 * 201.33419 * 17 16 15 20 20 C 1.36939 * 119.99547 * 273.54938 * 19 17 16 21 21 H 1.07993 * 120.00716 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99459 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99635 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99668 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99848 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99841 * 24 22 20 28 28 C 1.54325 * 103.93803 * 319.94817 * 17 16 15 29 29 H 1.09003 * 111.68602 * 262.78961 * 28 17 16 30 30 C 1.47216 * 126.70380 * 180.02562 * 11 9 8 31 31 H 1.08992 * 109.47319 * 270.26670 * 1 2 3 32 32 H 1.09006 * 109.47232 * 30.26763 * 1 2 3 33 33 H 1.09006 * 109.46851 * 150.26034 * 1 2 3 34 34 H 1.07996 * 118.90350 * 179.74970 * 4 3 2 35 35 H 0.96699 * 113.99911 * 269.98127 * 7 6 5 36 36 H 1.09003 * 110.06824 * 29.53247 * 12 11 9 37 37 H 1.08997 * 110.12215 * 268.02346 * 12 11 9 38 38 H 1.09001 * 110.53873 * 103.42076 * 15 13 12 39 39 H 1.09002 * 110.53672 * 340.64688 * 15 13 12 40 40 H 1.08999 * 110.89694 * 281.85578 * 16 15 13 41 41 H 1.08997 * 110.93342 * 158.27232 * 16 15 13 42 42 H 0.96998 * 120.00185 * 93.54321 * 19 17 16 43 43 H 0.96993 * 120.00007 * 0.02562 * 23 22 20 44 44 H 1.09005 * 110.07324 * 330.47088 * 30 11 9 45 45 H 1.09000 * 110.07179 * 92.00850 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1537 -0.0052 5 7 4.2115 0.0466 -0.0052 6 6 3.6234 -1.1434 -0.0004 7 8 4.3618 -2.2770 0.0001 8 6 2.2166 -1.2041 0.0057 9 6 1.5123 -2.5005 0.0111 10 8 1.2264 -3.0325 1.0663 11 7 1.1862 -3.0951 -1.1536 12 6 1.4583 -2.5861 -2.5078 13 6 1.6564 -3.8203 -3.4034 14 1 2.7093 -3.9906 -3.6282 15 6 0.8191 -3.6502 -4.6885 16 6 0.1973 -5.0521 -4.9175 17 6 -0.1730 -5.4832 -3.4749 18 1 -1.0958 -4.9985 -3.1560 19 7 -0.3041 -6.9399 -3.3915 20 6 -1.4985 -7.5382 -3.6927 21 1 -2.3439 -6.9363 -3.9913 22 6 -1.6225 -8.9186 -3.6143 23 7 -0.5920 -9.6524 -3.2508 24 14 -3.2519 -9.7347 -4.0244 25 1 -4.0767 -9.8396 -2.7939 26 1 -3.0018 -11.0931 -4.5699 27 1 -3.9728 -8.9204 -5.0355 28 6 1.0193 -4.9974 -2.6241 29 1 1.7368 -5.7975 -2.4421 30 6 0.4871 -4.3800 -1.3200 31 1 -0.3633 0.0048 1.0276 32 1 -0.3634 0.8876 -0.5180 33 1 -0.3633 -0.8924 -0.5098 34 1 4.0087 2.1049 -0.0091 35 1 4.5734 -2.6089 -0.8832 36 1 2.3626 -1.9776 -2.5040 37 1 0.6130 -1.9972 -2.8639 38 1 1.4579 -3.3736 -5.5273 39 1 0.0376 -2.9050 -4.5398 40 1 0.9273 -5.7349 -5.3521 41 1 -0.6921 -4.9860 -5.5441 42 1 0.4551 -7.4806 -3.1231 43 1 0.2540 -9.2285 -3.0375 44 1 0.7063 -5.0369 -0.4782 45 1 -0.5875 -4.2141 -1.3958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026338934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:28 Heat of formation + Delta-G solvation = -34.872959 kcal Electronic energy + Delta-G solvation = -29085.659045 eV Core-core repulsion = 25102.723246 eV Total energy + Delta-G solvation = -3982.935798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.67594 -41.40188 -39.74159 -38.96325 -36.96235 -35.48496 -35.22654 -33.24779 -32.69823 -30.96109 -29.89181 -29.67087 -26.86009 -26.24892 -24.90979 -24.47092 -23.99279 -21.82653 -20.90677 -20.53127 -20.12152 -19.42791 -19.30927 -18.60978 -17.63402 -17.36518 -17.06018 -16.34628 -16.32800 -15.95789 -15.58798 -15.43979 -15.32701 -15.08193 -14.62293 -14.49480 -13.98741 -13.95437 -13.91568 -13.72169 -13.46228 -13.18592 -13.16109 -12.73334 -12.65966 -12.46979 -12.32634 -12.01912 -11.87348 -11.67392 -11.63595 -11.56501 -11.54402 -11.28427 -11.14269 -10.85983 -10.73493 -10.57567 -9.97186 -9.06896 -8.36624 -5.30178 -0.61738 -0.33863 1.14487 1.58199 1.63751 1.68426 1.81998 2.08950 2.37265 2.71815 2.82869 3.03263 3.10325 3.31549 3.40555 3.58735 3.60357 3.71803 3.88108 3.99999 4.04477 4.14556 4.23004 4.32587 4.38065 4.45614 4.49096 4.53832 4.57223 4.61171 4.74074 4.80805 4.84700 4.94569 4.95507 5.03065 5.10866 5.18109 5.31247 5.38772 5.50688 5.59288 5.64519 6.23043 6.25655 6.51875 6.76829 6.78968 7.12214 8.02471 8.13714 9.15559 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.002787 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.069125 B =10042.785233 C =10148.607447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.231 3.769 3 N -0.528 5.528 4 C 0.341 3.659 5 N -0.553 5.553 6 C 0.398 3.602 7 O -0.481 6.481 8 C -0.260 4.260 9 C 0.597 3.403 10 O -0.571 6.571 11 N -0.601 5.601 12 C 0.107 3.893 13 C -0.087 4.087 14 H 0.108 0.892 15 C -0.101 4.101 16 C -0.138 4.138 17 C 0.180 3.820 18 H 0.050 0.950 19 N -0.747 5.747 20 C -0.323 4.323 21 H 0.067 0.933 22 C -0.107 4.107 23 N -0.979 5.979 24 Si 1.126 2.874 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.271 1.271 28 C -0.098 4.098 29 H 0.074 0.926 30 C 0.121 3.879 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.430 0.570 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.358 0.642 43 H 0.244 0.756 44 H 0.053 0.947 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 26.285 -0.618 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.085 3.915 3 N -0.245 5.245 4 C 0.056 3.944 5 N -0.278 5.278 6 C 0.210 3.790 7 O -0.292 6.292 8 C -0.269 4.269 9 C 0.384 3.616 10 O -0.450 6.450 11 N -0.332 5.332 12 C -0.014 4.014 13 C -0.107 4.107 14 H 0.127 0.873 15 C -0.139 4.139 16 C -0.178 4.178 17 C 0.071 3.929 18 H 0.068 0.932 19 N -0.388 5.388 20 C -0.454 4.454 21 H 0.085 0.915 22 C -0.298 4.298 23 N -0.628 5.628 24 Si 0.951 3.049 25 H -0.215 1.215 26 H -0.222 1.222 27 H -0.196 1.196 28 C -0.119 4.119 29 H 0.093 0.907 30 C -0.002 4.002 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.262 0.738 35 H 0.294 0.706 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.190 0.810 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.005 25.566 0.420 26.512 hybrid contribution 0.869 -0.461 0.119 0.990 sum 7.874 25.105 0.538 26.317 Atomic orbital electron populations 1.20996 0.85765 1.05398 1.04993 1.22086 0.98599 0.85589 0.85226 1.68440 1.10711 1.28537 1.16766 1.25859 0.86054 0.96981 0.85550 1.68195 1.42736 0.98681 1.18212 1.19474 0.85333 0.86464 0.87727 1.84661 1.72439 1.36022 1.36128 1.21510 0.95299 0.95779 1.14341 1.17435 0.78015 0.83772 0.82350 1.90832 1.56156 1.65972 1.32075 1.48576 1.56643 1.21883 1.06104 1.22530 1.02902 0.96500 0.79493 1.22564 1.01240 0.92038 0.94820 0.87350 1.22460 0.98966 0.95987 0.96533 1.23102 0.99745 0.96989 0.98005 1.21452 0.94892 0.82833 0.93709 0.93237 1.42668 1.11014 1.02641 1.82498 1.20360 0.91051 0.93014 1.40992 0.91538 1.27083 1.07365 0.94148 1.01223 1.70961 1.02560 1.37520 1.51726 0.82636 0.70947 0.74844 0.76429 1.21548 1.22212 1.19623 1.22696 0.97496 0.97856 0.93808 0.90720 1.22024 0.96427 0.84047 0.97706 0.88567 0.86645 0.90475 0.73764 0.70616 0.89271 0.88771 0.89318 0.89799 0.93260 0.92994 0.81000 0.94541 0.92856 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.85 71.23 0.70 -0.99 16 2 C 0.23 4.28 6.86 42.87 0.29 4.58 16 3 N -0.53 -8.67 10.36 -187.21 -1.94 -10.61 16 4 C 0.34 4.74 12.27 180.86 2.22 6.96 16 5 N -0.55 -10.27 10.45 -312.04 -3.26 -13.53 16 6 C 0.40 8.39 7.85 85.18 0.67 9.06 16 7 O -0.48 -9.81 13.10 -85.70 -1.12 -10.93 16 8 C -0.26 -5.75 4.53 -19.83 -0.09 -5.84 16 9 C 0.60 16.45 5.57 86.70 0.48 16.94 16 10 O -0.57 -21.47 17.34 -3.99 -0.07 -21.54 16 11 N -0.60 -14.18 3.32 -818.89 -2.72 -16.90 16 12 C 0.11 1.69 6.37 86.50 0.55 2.24 16 13 C -0.09 -1.61 3.91 -9.45 -0.04 -1.65 16 14 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 15 C -0.10 -1.87 6.35 31.75 0.20 -1.67 16 16 C -0.14 -4.13 6.60 32.00 0.21 -3.92 16 17 C 0.18 6.39 3.01 46.14 0.14 6.53 16 18 H 0.05 1.84 7.17 -2.39 -0.02 1.82 16 19 N -0.75 -35.93 5.23 -317.50 -1.66 -37.59 16 20 C -0.32 -17.62 9.97 84.03 0.84 -16.78 16 21 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 22 C -0.11 -6.16 5.50 84.86 0.47 -5.70 16 23 N -0.98 -61.20 13.70 21.65 0.30 -60.90 16 24 Si 1.13 51.85 29.92 68.60 2.05 53.90 16 25 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 C -0.10 -2.79 3.60 -9.44 -0.03 -2.82 16 29 H 0.07 2.37 7.78 -2.39 -0.02 2.35 16 30 C 0.12 3.54 6.54 86.51 0.57 4.11 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.08 1.23 7.18 -2.38 -0.02 1.21 16 34 H 0.25 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.43 4.33 9.06 -74.06 -0.67 3.66 16 36 H 0.09 1.02 7.51 -2.39 -0.02 1.00 16 37 H 0.09 1.22 7.13 -2.39 -0.02 1.20 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.32 7.19 -2.39 -0.02 1.30 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.36 18.29 6.40 -92.71 -0.59 17.69 16 43 H 0.24 15.17 6.77 -92.71 -0.63 14.54 16 44 H 0.05 1.87 7.92 -2.38 -0.02 1.85 16 45 H 0.07 2.17 7.13 -2.39 -0.02 2.15 16 Total: -1.00 -79.48 369.49 -1.32 -80.80 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.08 Total: 26.28 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 7.18 Total: 11.03 kcal Atomic # 7 Polarization: -130.25 SS G_CDS: -9.28 Total: -139.53 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -1.19 Total: -32.47 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.05 Total: 53.90 kcal Total: -79.48 -1.32 -80.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026338934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.927 kcal (2) G-P(sol) polarization free energy of solvation -79.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds