Wall clock time and date at job start Tue Mar 31 2020 17:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32215 * 120.51152 * 2 1 4 4 C 1.31915 * 121.14159 * 180.02562 * 3 2 1 5 5 N 1.31743 * 122.19716 * 0.02562 * 4 3 2 6 6 C 1.32749 * 120.87286 * 359.68312 * 5 4 3 7 7 O 1.35279 * 120.61688 * 180.28698 * 6 5 4 8 8 C 1.39765 * 120.50978 * 180.02562 * 2 1 3 9 9 C 1.47542 * 120.97820 * 359.94619 * 8 2 1 10 10 O 1.21589 * 119.99256 * 90.00672 * 9 8 2 11 11 N 1.34771 * 120.00185 * 270.00496 * 9 8 2 12 12 C 1.49214 * 126.05832 * 0.02562 * 11 9 8 13 13 C 1.50352 * 104.85922 * 172.93323 * 12 11 9 14 14 H 1.09001 * 110.04671 * 278.95672 * 13 12 11 15 15 C 1.50991 * 125.57383 * 144.33414 * 13 12 11 16 16 C 1.56399 * 101.59815 * 203.97654 * 15 13 12 17 17 C 1.54944 * 105.61608 * 24.46582 * 16 15 13 18 18 H 1.08996 * 109.34039 * 126.79265 * 17 16 15 19 19 N 1.46500 * 111.17291 * 249.12391 * 17 16 15 20 20 C 1.36933 * 120.00304 * 270.74135 * 19 17 16 21 21 H 1.08006 * 119.99966 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00400 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00572 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99726 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47175 * 90.00266 * 24 22 20 26 26 H 1.48498 * 109.47231 * 210.00132 * 24 22 20 27 27 H 1.48499 * 109.47115 * 330.00032 * 24 22 20 28 28 C 1.50297 * 104.64655 * 8.41797 * 17 16 15 29 29 H 1.09002 * 109.99891 * 79.41323 * 28 17 16 30 30 C 1.49698 * 126.05662 * 180.02562 * 11 9 8 31 31 H 1.08999 * 109.46574 * 269.97766 * 1 2 3 32 32 H 1.08999 * 109.47005 * 29.97029 * 1 2 3 33 33 H 1.08997 * 109.47348 * 149.97351 * 1 2 3 34 34 H 1.08008 * 118.89631 * 180.02562 * 4 3 2 35 35 H 0.96696 * 113.99589 * 270.27879 * 7 6 5 36 36 H 1.08996 * 110.35983 * 291.77327 * 12 11 9 37 37 H 1.08991 * 110.36389 * 53.97724 * 12 11 9 38 38 H 1.08998 * 110.99959 * 322.05267 * 15 13 12 39 39 H 1.09001 * 111.00066 * 85.85657 * 15 13 12 40 40 H 1.08996 * 110.19173 * 144.09549 * 16 15 13 41 41 H 1.09004 * 110.18497 * 265.86335 * 16 15 13 42 42 H 0.97007 * 119.99963 * 90.73384 * 19 17 16 43 43 H 0.97000 * 120.00781 * 180.02562 * 23 22 20 44 44 H 1.08994 * 110.84799 * 36.67241 * 30 11 9 45 45 H 1.08999 * 111.01881 * 273.13216 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1536 -0.0005 5 7 4.2115 0.0465 -0.0015 6 6 3.6234 -1.1435 0.0042 7 8 4.3618 -2.2770 0.0089 8 6 2.2165 -1.2041 -0.0005 9 6 1.5123 -2.5006 0.0001 10 8 1.2214 -3.0348 -1.0528 11 7 1.1914 -3.0927 1.1675 12 6 1.4810 -2.5603 2.5310 13 6 0.7702 -3.4958 3.4692 14 1 -0.2864 -3.2347 3.5278 15 6 1.2666 -3.9191 4.8309 16 6 0.5229 -5.2808 5.0274 17 6 0.2093 -5.7946 3.5996 18 1 0.5887 -6.8106 3.4902 19 7 -1.2291 -5.7506 3.3255 20 6 -2.0181 -6.8268 3.6332 21 1 -1.5798 -7.7082 4.0776 22 6 -3.3811 -6.7849 3.3739 23 7 -4.1393 -7.8194 3.6691 24 14 -4.1393 -5.2601 2.6059 25 1 -4.1139 -5.3862 1.1264 26 1 -5.5440 -5.1201 3.0666 27 1 -3.3628 -4.0620 3.0140 28 6 0.9478 -4.8560 2.6872 29 1 2.0029 -5.1271 2.6483 30 6 0.4814 -4.4010 1.3260 31 1 -0.3632 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 4.0088 2.1049 -0.0001 35 1 4.5796 -2.6081 -0.8731 36 1 2.5538 -2.5732 2.7232 37 1 1.0901 -1.5481 2.6338 38 1 2.3473 -4.0614 4.8258 39 1 0.9731 -3.1991 5.5948 40 1 1.1622 -5.9854 5.5592 41 1 -0.4053 -5.1265 5.5777 42 1 -1.6228 -4.9591 2.9261 43 1 -5.0918 -7.7903 3.4876 44 1 0.7906 -5.1061 0.5545 45 1 -0.5997 -4.2633 1.3125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026338935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:31 Heat of formation + Delta-G solvation = 14.428167 kcal Electronic energy + Delta-G solvation = -29452.532139 eV Core-core repulsion = 25471.734197 eV Total energy + Delta-G solvation = -3980.797941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82001 -40.58745 -38.74316 -38.13701 -35.47585 -34.60160 -33.46024 -32.40008 -31.19401 -29.85048 -29.04466 -28.76156 -25.99629 -25.38950 -23.38388 -23.19838 -22.80644 -20.18846 -19.99842 -19.32754 -19.12225 -18.48299 -17.97502 -17.34776 -16.75461 -16.33789 -15.64742 -15.21483 -15.10128 -14.66584 -14.62240 -14.23560 -13.95917 -13.85698 -13.71578 -13.30231 -13.05818 -12.90480 -12.77239 -12.56878 -12.43768 -12.11056 -11.98885 -11.67794 -11.52094 -11.16823 -10.97704 -10.79000 -10.78240 -10.53496 -10.43247 -10.19379 -10.16596 -9.85283 -9.80415 -9.76201 -9.61331 -9.00105 -8.81200 -7.34497 -5.82153 -3.18498 0.16651 0.44893 2.23676 2.63409 2.80842 3.20010 3.30733 3.34481 3.41231 3.52230 3.79364 3.88943 4.18983 4.50015 4.53326 4.68061 4.74740 4.85796 4.98024 5.08560 5.13058 5.23144 5.25923 5.36633 5.38235 5.47011 5.48965 5.50637 5.60509 5.72855 5.79317 5.80036 5.92624 6.03966 6.04974 6.18336 6.24891 6.33164 6.36972 6.43551 6.65559 6.86546 6.88289 7.27840 7.53339 7.85106 7.93875 8.36837 9.14152 9.86587 10.05371 11.36135 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.003575 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.858945 B = 7830.158016 C = 8506.380409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.228 3.772 3 N -0.525 5.525 4 C 0.334 3.666 5 N -0.542 5.542 6 C 0.399 3.601 7 O -0.469 6.469 8 C -0.242 4.242 9 C 0.592 3.408 10 O -0.530 6.530 11 N -0.609 5.609 12 C 0.122 3.878 13 C -0.130 4.130 14 H 0.086 0.914 15 C -0.096 4.096 16 C -0.145 4.145 17 C 0.201 3.799 18 H 0.064 0.936 19 N -0.742 5.742 20 C -0.245 4.245 21 H 0.092 0.908 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.879 3.121 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.279 1.279 28 C -0.123 4.123 29 H 0.083 0.917 30 C 0.131 3.869 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.207 0.793 35 H 0.415 0.585 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.360 0.640 43 H 0.260 0.740 44 H 0.085 0.915 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.281 17.367 -4.733 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 N -0.241 5.241 4 C 0.046 3.954 5 N -0.267 5.267 6 C 0.211 3.789 7 O -0.277 6.277 8 C -0.251 4.251 9 C 0.377 3.623 10 O -0.407 6.407 11 N -0.343 5.343 12 C 0.000 4.000 13 C -0.149 4.149 14 H 0.105 0.895 15 C -0.135 4.135 16 C -0.185 4.185 17 C 0.090 3.910 18 H 0.082 0.918 19 N -0.385 5.385 20 C -0.374 4.374 21 H 0.110 0.890 22 C -0.189 4.189 23 N -0.579 5.579 24 Si 0.709 3.291 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.143 4.143 29 H 0.102 0.898 30 C 0.010 3.990 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.223 0.777 35 H 0.276 0.724 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.481 17.687 -4.728 24.633 hybrid contribution -0.834 0.305 -0.888 1.256 sum 15.647 17.992 -5.616 24.496 Atomic orbital electron populations 1.20965 0.86840 1.05133 1.04568 1.21823 0.97810 0.85927 0.86234 1.68320 1.10191 1.29303 1.16255 1.24989 0.86254 0.96132 0.87990 1.68067 1.42604 0.98644 1.17355 1.19366 0.85428 0.85992 0.88122 1.84628 1.72445 1.35912 1.34745 1.21772 0.95071 0.96813 1.11421 1.17111 0.78721 0.83339 0.83080 1.90854 1.54818 1.64712 1.30326 1.49803 1.56948 1.22499 1.05053 1.21282 1.00243 0.97083 0.81398 1.22250 1.01366 0.95418 0.95855 0.89537 1.21736 0.99630 0.97926 0.94160 1.23655 1.00299 0.94620 0.99942 1.19876 0.84471 0.96358 0.90311 0.91758 1.42784 1.02863 1.17408 1.75421 1.19079 0.89487 0.94209 1.34672 0.89028 1.24654 0.96120 0.96964 1.01112 1.69686 1.05321 1.29609 1.53332 0.86651 0.78967 0.83770 0.79707 1.20896 1.21665 1.20511 1.22535 1.01371 0.96538 0.93814 0.89831 1.21498 0.96995 0.82957 0.97503 0.88712 0.88779 0.89495 0.77689 0.72397 0.91126 0.91548 0.91752 0.91886 0.92144 0.90389 0.80636 0.92996 0.89691 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.85 36.00 0.35 -0.75 16 2 C 0.23 2.49 6.86 -81.86 -0.56 1.93 16 3 N -0.52 -5.34 10.36 -10.52 -0.11 -5.45 16 4 C 0.33 2.95 12.27 -92.09 -1.13 1.82 16 5 N -0.54 -5.74 10.45 -14.32 -0.15 -5.89 16 6 C 0.40 4.51 7.85 -16.18 -0.13 4.38 16 7 O -0.47 -4.78 13.10 -17.53 -0.23 -5.01 16 8 C -0.24 -2.91 4.89 -104.56 -0.51 -3.42 16 9 C 0.59 8.38 5.57 -12.47 -0.07 8.31 16 10 O -0.53 -9.17 17.44 5.29 0.09 -9.07 16 11 N -0.61 -8.26 3.43 -172.79 -0.59 -8.85 16 12 C 0.12 1.42 6.39 -3.86 -0.02 1.39 16 13 C -0.13 -1.66 2.72 -90.27 -0.25 -1.91 16 14 H 0.09 1.26 7.60 -51.93 -0.39 0.87 16 15 C -0.10 -1.16 6.72 -25.91 -0.17 -1.33 16 16 C -0.14 -2.18 6.74 -23.88 -0.16 -2.34 16 17 C 0.20 3.46 3.34 -68.25 -0.23 3.23 16 18 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 19 N -0.74 -16.10 4.62 -53.74 -0.25 -16.35 16 20 C -0.24 -6.53 10.44 -15.06 -0.16 -6.69 16 21 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 23 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 24 Si 0.88 21.43 27.73 -169.99 -4.71 16.71 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 28 C -0.12 -1.75 2.65 -90.33 -0.24 -1.99 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 C 0.13 1.99 6.52 -3.31 -0.02 1.97 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.93 7.18 -51.93 -0.37 0.56 16 34 H 0.21 0.99 8.06 -52.48 -0.42 0.56 16 35 H 0.41 2.48 9.06 45.56 0.41 2.89 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.36 7.98 -51.93 -0.41 0.94 16 42 H 0.36 7.75 4.00 -40.82 -0.16 7.59 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 44 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 45 H 0.08 1.33 6.92 -51.93 -0.36 0.97 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -33.67 368.63 -8.54 -42.21 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.53 Total: 9.22 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -3.39 Total: 4.72 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.32 Total: -64.33 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.14 Total: -14.08 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.67 -8.54 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026338935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.634 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds