Wall clock time and date at job start Tue Mar 31 2020 17:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32215 * 120.51152 * 2 1 4 4 C 1.31915 * 121.14159 * 180.02562 * 3 2 1 5 5 N 1.31743 * 122.19716 * 0.02562 * 4 3 2 6 6 C 1.32749 * 120.87286 * 359.68312 * 5 4 3 7 7 O 1.35279 * 120.61688 * 180.28698 * 6 5 4 8 8 C 1.39765 * 120.50978 * 180.02562 * 2 1 3 9 9 C 1.47542 * 120.97820 * 359.94619 * 8 2 1 10 10 O 1.21589 * 119.99256 * 90.00672 * 9 8 2 11 11 N 1.34771 * 120.00185 * 270.00496 * 9 8 2 12 12 C 1.49214 * 126.05832 * 0.02562 * 11 9 8 13 13 C 1.50352 * 104.85922 * 172.93323 * 12 11 9 14 14 H 1.09001 * 110.04671 * 278.95672 * 13 12 11 15 15 C 1.50991 * 125.57383 * 144.33414 * 13 12 11 16 16 C 1.56399 * 101.59815 * 203.97654 * 15 13 12 17 17 C 1.54944 * 105.61608 * 24.46582 * 16 15 13 18 18 H 1.08996 * 109.34039 * 126.79265 * 17 16 15 19 19 N 1.46500 * 111.17291 * 249.12391 * 17 16 15 20 20 C 1.36933 * 120.00304 * 270.74135 * 19 17 16 21 21 H 1.08006 * 119.99966 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00400 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00572 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99726 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47175 * 90.00266 * 24 22 20 26 26 H 1.48498 * 109.47231 * 210.00132 * 24 22 20 27 27 H 1.48499 * 109.47115 * 330.00032 * 24 22 20 28 28 C 1.50297 * 104.64655 * 8.41797 * 17 16 15 29 29 H 1.09002 * 109.99891 * 79.41323 * 28 17 16 30 30 C 1.49698 * 126.05662 * 180.02562 * 11 9 8 31 31 H 1.08999 * 109.46574 * 269.97766 * 1 2 3 32 32 H 1.08999 * 109.47005 * 29.97029 * 1 2 3 33 33 H 1.08997 * 109.47348 * 149.97351 * 1 2 3 34 34 H 1.08008 * 118.89631 * 180.02562 * 4 3 2 35 35 H 0.96696 * 113.99589 * 270.27879 * 7 6 5 36 36 H 1.08996 * 110.35983 * 291.77327 * 12 11 9 37 37 H 1.08991 * 110.36389 * 53.97724 * 12 11 9 38 38 H 1.08998 * 110.99959 * 322.05267 * 15 13 12 39 39 H 1.09001 * 111.00066 * 85.85657 * 15 13 12 40 40 H 1.08996 * 110.19173 * 144.09549 * 16 15 13 41 41 H 1.09004 * 110.18497 * 265.86335 * 16 15 13 42 42 H 0.97007 * 119.99963 * 90.73384 * 19 17 16 43 43 H 0.97000 * 120.00781 * 180.02562 * 23 22 20 44 44 H 1.08994 * 110.84799 * 36.67241 * 30 11 9 45 45 H 1.08999 * 111.01881 * 273.13216 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1536 -0.0005 5 7 4.2115 0.0465 -0.0015 6 6 3.6234 -1.1435 0.0042 7 8 4.3618 -2.2770 0.0089 8 6 2.2165 -1.2041 -0.0005 9 6 1.5123 -2.5006 0.0001 10 8 1.2214 -3.0348 -1.0528 11 7 1.1914 -3.0927 1.1675 12 6 1.4810 -2.5603 2.5310 13 6 0.7702 -3.4958 3.4692 14 1 -0.2864 -3.2347 3.5278 15 6 1.2666 -3.9191 4.8309 16 6 0.5229 -5.2808 5.0274 17 6 0.2093 -5.7946 3.5996 18 1 0.5887 -6.8106 3.4902 19 7 -1.2291 -5.7506 3.3255 20 6 -2.0181 -6.8268 3.6332 21 1 -1.5798 -7.7082 4.0776 22 6 -3.3811 -6.7849 3.3739 23 7 -4.1393 -7.8194 3.6691 24 14 -4.1393 -5.2601 2.6059 25 1 -4.1139 -5.3862 1.1264 26 1 -5.5440 -5.1201 3.0666 27 1 -3.3628 -4.0620 3.0140 28 6 0.9478 -4.8560 2.6872 29 1 2.0029 -5.1271 2.6483 30 6 0.4814 -4.4010 1.3260 31 1 -0.3632 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 4.0088 2.1049 -0.0001 35 1 4.5796 -2.6081 -0.8731 36 1 2.5538 -2.5732 2.7232 37 1 1.0901 -1.5481 2.6338 38 1 2.3473 -4.0614 4.8258 39 1 0.9731 -3.1991 5.5948 40 1 1.1622 -5.9854 5.5592 41 1 -0.4053 -5.1265 5.5777 42 1 -1.6228 -4.9591 2.9261 43 1 -5.0918 -7.7903 3.4876 44 1 0.7906 -5.1061 0.5545 45 1 -0.5997 -4.2633 1.3125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026338935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:30 Heat of formation + Delta-G solvation = -11.532964 kcal Electronic energy + Delta-G solvation = -29453.657898 eV Core-core repulsion = 25471.734197 eV Total energy + Delta-G solvation = -3981.923700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.65200 -41.68638 -39.87376 -38.89654 -36.86373 -35.40054 -35.10510 -33.23479 -33.01791 -30.95471 -30.29516 -29.64221 -27.27013 -26.30984 -24.87054 -24.28067 -23.95794 -21.26546 -21.01024 -20.57877 -20.06681 -19.79765 -19.26102 -18.44225 -17.76719 -17.28453 -16.70002 -16.66620 -16.09148 -16.04797 -15.61525 -15.45800 -15.31940 -14.96106 -14.61751 -14.48942 -14.18335 -14.01872 -13.89053 -13.74662 -13.54698 -13.35242 -13.20261 -13.01551 -12.76090 -12.59300 -12.33019 -12.22501 -11.96139 -11.89982 -11.65290 -11.53418 -11.47519 -11.24095 -10.99264 -10.92652 -10.70316 -10.57321 -9.93295 -9.29604 -8.01208 -5.33382 -0.60109 -0.32647 1.18549 1.33880 1.38455 1.44410 1.58438 2.08923 2.44327 2.47384 2.80451 2.84810 3.07327 3.20077 3.30717 3.56174 3.69942 3.74881 3.86670 4.01874 4.10230 4.14468 4.19329 4.33512 4.36531 4.45958 4.50964 4.54196 4.56489 4.64499 4.80155 4.83908 4.84442 4.92044 4.94479 5.07852 5.10662 5.17896 5.30697 5.40086 5.59082 5.60540 5.81932 6.21667 6.23657 6.25016 6.77185 6.80279 7.09477 7.86079 8.03590 9.20633 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.003575 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.858945 B = 7830.158016 C = 8506.380409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.229 3.771 3 N -0.531 5.531 4 C 0.341 3.659 5 N -0.552 5.552 6 C 0.402 3.598 7 O -0.478 6.478 8 C -0.259 4.259 9 C 0.597 3.403 10 O -0.570 6.570 11 N -0.607 5.607 12 C 0.128 3.872 13 C -0.116 4.116 14 H 0.069 0.931 15 C -0.082 4.082 16 C -0.140 4.140 17 C 0.190 3.810 18 H 0.050 0.950 19 N -0.744 5.744 20 C -0.221 4.221 21 H 0.061 0.939 22 C -0.062 4.062 23 N -0.985 5.985 24 Si 0.943 3.057 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.251 1.251 28 C -0.120 4.120 29 H 0.103 0.897 30 C 0.130 3.870 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.246 0.754 35 H 0.430 0.570 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.363 0.637 43 H 0.256 0.744 44 H 0.072 0.928 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.555 20.836 -4.452 28.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 N -0.247 5.247 4 C 0.055 3.945 5 N -0.277 5.277 6 C 0.213 3.787 7 O -0.289 6.289 8 C -0.268 4.268 9 C 0.384 3.616 10 O -0.450 6.450 11 N -0.339 5.339 12 C 0.007 3.993 13 C -0.136 4.136 14 H 0.088 0.912 15 C -0.120 4.120 16 C -0.180 4.180 17 C 0.081 3.919 18 H 0.069 0.931 19 N -0.387 5.387 20 C -0.352 4.352 21 H 0.079 0.921 22 C -0.253 4.253 23 N -0.636 5.636 24 Si 0.771 3.229 25 H -0.210 1.210 26 H -0.224 1.224 27 H -0.175 1.175 28 C -0.140 4.140 29 H 0.121 0.879 30 C 0.009 3.991 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.261 0.739 35 H 0.294 0.706 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.835 21.202 -4.431 28.704 hybrid contribution -1.413 -0.832 -0.973 1.907 sum 17.422 20.370 -5.404 27.343 Atomic orbital electron populations 1.20993 0.86190 1.04958 1.05265 1.22018 0.98392 0.85830 0.85501 1.68428 1.10812 1.28622 1.16816 1.25833 0.85981 0.97058 0.85665 1.68197 1.42701 0.98715 1.18126 1.19447 0.85219 0.86527 0.87462 1.84573 1.72251 1.35818 1.36255 1.21578 0.95383 0.95826 1.14049 1.17389 0.78046 0.83745 0.82430 1.90827 1.56449 1.65969 1.31736 1.49798 1.56395 1.21770 1.05949 1.21356 1.01005 0.97383 0.79576 1.22200 1.00770 0.94352 0.96235 0.91227 1.21675 1.00608 0.95884 0.93848 1.23479 0.99926 0.97064 0.97557 1.20135 0.82096 0.96835 0.92838 0.93144 1.42756 1.04432 1.16072 1.75466 1.19050 0.89815 0.94341 1.32033 0.92133 1.25391 0.96853 1.00139 1.02947 1.69862 1.05398 1.32213 1.56084 0.85591 0.77771 0.81132 0.78412 1.21015 1.22395 1.17528 1.22360 1.01562 0.96835 0.93221 0.87885 1.21335 0.96142 0.83918 0.97699 0.87507 0.87335 0.91237 0.73861 0.70561 0.89659 0.89816 0.89243 0.90213 0.90848 0.92937 0.80289 0.93498 0.90908 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.85 71.23 0.70 -1.28 16 2 C 0.23 4.48 6.86 42.87 0.29 4.77 16 3 N -0.53 -9.19 10.36 -187.21 -1.94 -11.13 16 4 C 0.34 4.85 12.27 180.86 2.22 7.07 16 5 N -0.55 -10.08 10.45 -312.03 -3.26 -13.34 16 6 C 0.40 8.16 7.85 85.18 0.67 8.83 16 7 O -0.48 -8.78 13.10 -85.65 -1.12 -9.90 16 8 C -0.26 -5.75 4.89 -19.82 -0.10 -5.84 16 9 C 0.60 16.28 5.57 86.70 0.48 16.76 16 10 O -0.57 -19.77 17.44 -4.00 -0.07 -19.84 16 11 N -0.61 -15.45 3.43 -818.84 -2.81 -18.25 16 12 C 0.13 2.55 6.39 85.00 0.54 3.09 16 13 C -0.12 -2.64 2.72 -10.56 -0.03 -2.67 16 14 H 0.07 1.85 7.60 -2.39 -0.02 1.84 16 15 C -0.08 -1.66 6.72 31.12 0.21 -1.46 16 16 C -0.14 -3.98 6.74 32.44 0.22 -3.76 16 17 C 0.19 6.43 3.34 44.78 0.15 6.58 16 18 H 0.05 1.83 8.09 -2.39 -0.02 1.81 16 19 N -0.74 -32.36 4.62 -323.93 -1.50 -33.85 16 20 C -0.22 -12.12 10.44 84.03 0.88 -11.25 16 21 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 22 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 23 N -0.98 -62.62 13.97 21.65 0.30 -62.32 16 24 Si 0.94 44.95 27.73 68.60 1.90 46.85 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 28 C -0.12 -3.24 2.65 -10.61 -0.03 -3.27 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 C 0.13 3.88 6.52 85.08 0.56 4.44 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.43 7.18 -2.39 -0.02 1.42 16 34 H 0.25 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.43 4.50 9.06 -74.06 -0.67 3.83 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.77 7.98 -2.39 -0.02 1.76 16 42 H 0.36 15.40 4.00 -92.70 -0.37 15.03 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 45 H 0.06 2.03 6.92 -2.39 -0.02 2.01 16 Total: -1.00 -75.30 368.63 -1.32 -76.62 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.06 Total: 26.28 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 7.23 Total: 18.89 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -9.20 Total: -138.90 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -1.19 Total: -29.74 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Total: -75.30 -1.32 -76.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026338935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.087 kcal (2) G-P(sol) polarization free energy of solvation -75.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds